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The map label for this gene is rbsR [H]

Identifier: 213691562

GI number: 213691562

Start: 766283

End: 767302

Strand: Direct

Name: rbsR [H]

Synonym: Blon_0664

Alternate gene names: 213691562

Gene position: 766283-767302 (Clockwise)

Preceding gene: 213691561

Following gene: 213691569

Centisome position: 27.05

GC content: 55.29

Gene sequence:

>1020_bases
ATGTCTAGGCGCAAAACATATCCCGGAATTGTCGATGTCGCACGTGAGGCGCAGGTGTCTCCTTCAACTGTTTCGCGGAC
TTTCTCCCGACCTGGTTACGTCAGCAAAGCCACTGCGAAACGAATTTTCGATGCCGCGAACCGTCTCGGATACCGGTCTA
AGGAGATCGCGCCCGTCACGACCCTCGAGGTCAAGCATCATCTTATTCTGCTCATTGTCTCCGATATCAGCAATCCCGCG
TTCGCGCAACTCATCCGCTGTATCCAGCATGAGTGCATGCGCGAGAACTACGGTCTGCTCATCGCCGACACGGAGGAGAC
CAAAATAAACGAGCGCGATAGTCTCCACGACTTCAACAATGTGGACGGCGTCGTGCTGGCGTCTTCCCGATTGAGTGACA
CCATGATTCGAAAATTCGCGCAACATCACAAAGTGGTCATGGTCAACCGCGAGGTGCGTGGCATACCATCCGTAATACCG
GATTACTCGTCCAGCTTCGAATCCATGGTCGACCGTCTCATCGCGCTCGGCCATACCAGCATCACTTATCTCACCGGGCC
GGAAGCCTCTTGGGCGGAAGGCATGCGCTGGCGCACGCTATTCGACGTGTGCAAAAGGAAGAACATGCCTTTGAAACGTC
TTCCGGGCAAGTACCCGACTCTCCAAGCCGGTCAGGAGGCGTTCCGGAAGTTCATGAAGCAGCCCAGTTCCACTGCGATA
ATTACCTACAATGATCTGCAGGCAATGGGGTTCATCACCTCGGCGAGGCAGCACCACGTGGAAATCCCTGGGCGTTTTTC
GGTGATCGGCATCGACGACACCCCGAATTGCACGCTTATTTCCCCCTCGCTCAGCAGCATACACATCGACCGTCGCGAGG
CGGGAAAAACCGCGACCGCCATCTTGTTCGGTATGGTGAACGGCCGGAATCAATCGAACGCGGGCAAACAGGGCCTTTGG
GAAATACCTACCAGCTTCATAGAACGGGATAGTATCGGCATTCCGCTTGCGGATTGTTAG

Upstream 100 bases:

>100_bases
AGGAAATAAAAGCCGATGCAAAATCGCCTACGTCATTTCATATTCAGCATTTCGAAAACTATACTGCAGGAGATGCGTTT
ACCTAACAGGGGAGGGCAGT

Downstream 100 bases:

>100_bases
CCCATAGCTTTCAATCTCGCCGGGGTCCGGTGCTGCCACGTGCGATGAAACGAGAGTCCAACATAATCGGTTTCAGCAAT
CGATGGAGGTTTCCTCCGCG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSRRKTYPGIVDVAREAQVSPSTVSRTFSRPGYVSKATAKRIFDAANRLGYRSKEIAPVTTLEVKHHLILLIVSDISNPA
FAQLIRCIQHECMRENYGLLIADTEETKINERDSLHDFNNVDGVVLASSRLSDTMIRKFAQHHKVVMVNREVRGIPSVIP
DYSSSFESMVDRLIALGHTSITYLTGPEASWAEGMRWRTLFDVCKRKNMPLKRLPGKYPTLQAGQEAFRKFMKQPSSTAI
ITYNDLQAMGFITSARQHHVEIPGRFSVIGIDDTPNCTLISPSLSSIHIDRREAGKTATAILFGMVNGRNQSNAGKQGLW
EIPTSFIERDSIGIPLADC

Sequences:

>Translated_339_residues
MSRRKTYPGIVDVAREAQVSPSTVSRTFSRPGYVSKATAKRIFDAANRLGYRSKEIAPVTTLEVKHHLILLIVSDISNPA
FAQLIRCIQHECMRENYGLLIADTEETKINERDSLHDFNNVDGVVLASSRLSDTMIRKFAQHHKVVMVNREVRGIPSVIP
DYSSSFESMVDRLIALGHTSITYLTGPEASWAEGMRWRTLFDVCKRKNMPLKRLPGKYPTLQAGQEAFRKFMKQPSSTAI
ITYNDLQAMGFITSARQHHVEIPGRFSVIGIDDTPNCTLISPSLSSIHIDRREAGKTATAILFGMVNGRNQSNAGKQGLW
EIPTSFIERDSIGIPLADC
>Mature_338_residues
SRRKTYPGIVDVAREAQVSPSTVSRTFSRPGYVSKATAKRIFDAANRLGYRSKEIAPVTTLEVKHHLILLIVSDISNPAF
AQLIRCIQHECMRENYGLLIADTEETKINERDSLHDFNNVDGVVLASSRLSDTMIRKFAQHHKVVMVNREVRGIPSVIPD
YSSSFESMVDRLIALGHTSITYLTGPEASWAEGMRWRTLFDVCKRKNMPLKRLPGKYPTLQAGQEAFRKFMKQPSSTAII
TYNDLQAMGFITSARQHHVEIPGRFSVIGIDDTPNCTLISPSLSSIHIDRREAGKTATAILFGMVNGRNQSNAGKQGLWE
IPTSFIERDSIGIPLADC

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=319, Percent_Identity=28.5266457680251, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790194, Length=304, Percent_Identity=27.3026315789474, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788474, Length=300, Percent_Identity=26, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1789068, Length=341, Percent_Identity=26.6862170087977, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787948, Length=340, Percent_Identity=25, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786540, Length=342, Percent_Identity=23.3918128654971, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790689, Length=307, Percent_Identity=22.8013029315961, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789202, Length=297, Percent_Identity=23.5690235690236, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787580, Length=323, Percent_Identity=21.3622291021672, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787906, Length=251, Percent_Identity=27.8884462151394, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790715, Length=311, Percent_Identity=22.8295819935691, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1789456, Length=311, Percent_Identity=22.8295819935691, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37879; Mature: 37748

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRKTYPGIVDVAREAQVSPSTVSRTFSRPGYVSKATAKRIFDAANRLGYRSKEIAPVT
CCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
TLEVKHHLILLIVSDISNPAFAQLIRCIQHECMRENYGLLIADTEETKINERDSLHDFNN
EEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
VDGVVLASSRLSDTMIRKFAQHHKVVMVNREVRGIPSVIPDYSSSFESMVDRLIALGHTS
CCCEEEECCHHHHHHHHHHHHCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCE
ITYLTGPEASWAEGMRWRTLFDVCKRKNMPLKRLPGKYPTLQAGQEAFRKFMKQPSSTAI
EEEEECCCCHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCEE
ITYNDLQAMGFITSARQHHVEIPGRFSVIGIDDTPNCTLISPSLSSIHIDRREAGKTATA
EEECCHHHHHHHHHHHHHEEECCCEEEEEECCCCCCEEEECCCCCCEEECHHHCCCHHHH
ILFGMVNGRNQSNAGKQGLWEIPTSFIERDSIGIPLADC
HEEECCCCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SRRKTYPGIVDVAREAQVSPSTVSRTFSRPGYVSKATAKRIFDAANRLGYRSKEIAPVT
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEE
TLEVKHHLILLIVSDISNPAFAQLIRCIQHECMRENYGLLIADTEETKINERDSLHDFNN
EEECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCC
VDGVVLASSRLSDTMIRKFAQHHKVVMVNREVRGIPSVIPDYSSSFESMVDRLIALGHTS
CCCEEEECCHHHHHHHHHHHHCCCEEEECCHHCCCCCCCCCHHHHHHHHHHHHHHHCCCE
ITYLTGPEASWAEGMRWRTLFDVCKRKNMPLKRLPGKYPTLQAGQEAFRKFMKQPSSTAI
EEEEECCCCHHHHCCHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCEE
ITYNDLQAMGFITSARQHHVEIPGRFSVIGIDDTPNCTLISPSLSSIHIDRREAGKTATA
EEECCHHHHHHHHHHHHHEEECCCEEEEEECCCCCCEEEECCCCCCEEECHHHCCCHHHH
ILFGMVNGRNQSNAGKQGLWEIPTSFIERDSIGIPLADC
HEEECCCCCCCCCCCCCCHHHCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]