| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691545
Identifier: 213691545
GI number: 213691545
Start: 742898
End: 745180
Strand: Reverse
Name: 213691545
Synonym: Blon_0646
Alternate gene names: NA
Gene position: 745180-742898 (Counterclockwise)
Preceding gene: 213691551
Following gene: 213691523
Centisome position: 26.31
GC content: 65.18
Gene sequence:
>2283_bases ATGGCAGCATCCAACCCGATCAGCTGGTCACAGCGAACATTCCCCTCACCCGAAGGCACGATCGCGTGCAGATTCCGCGC ACACGCGGACGGCCGCATCTTCGATGCCGTCAATGGATCGGCGAATGACGCGCCGCTCCTCATATGCGCCATCGAACATG ACGCTCTGCGCGTGCGCGCGACGACGCCACGACAGCACGTCGATTTCGACATCGAGGACACGACGGGGATAGCCGACGGC GCCATGCACACGTTCGCGCTCACATTCGGCGAGTTCGGCACGCGCGTCTACCTCGACGGCTCCCAGTGCTTCAGCGGCAC GGCGAACCTGTGCCCCACGACGCTCACCGGAACCGAGGGGTCAGGCCAAGGCGCGATTCGCCTCGCGGGCCCGTCCATCG ACGTGACCGACATGCGTCTGCATGCAATCCCCCTCACCTCCGAAAGCATCGCCGCCTTGACGCCGAGACCCGCACCGGAC ATCGACTTCGCCGCGGCCCAGCTCGCCCCGCGAGATGTGCGCCGCGTGCGCACGCTACGTTCCGGCACGATCTTCATGCA TTTTCGTGTGCGCGGACCCCGCCAGTACGGCACGCTTCTCGCCGCCGGCGAGCGCGGCGAGGAACGCCTCGCCGTCTCGA TCGACGACAACGGCATCACGATGACGGCCGCGGATGGCCTGTATGAGCCATCCACCTACCATGCGCGCGGCGCATGGGAT GACGGCCGATGGCATGATCTGTCGATTCGTTCCGCGCGTGGCGCCATCGACATGTACGTCGACGGCTGGCACGAACTGCA TCAAGCGGGACAGGTGTTCTTCGGCGACTGGCCGCAACTGGATGAGGTGGCCATCGGGCAGAACACGGAAGGCGTCAGGC TCATGGGCGAGGTGCGCAACGGCGGCGTCTTCACGACCCCGCTCACCGACGGCGCGATCCGCAGGCTTTCGGACGCACCG GCGCTAACGACGACCGCACTGTTCGACAAGGGTTACCACGGATCCGTGAGTTATCGCATCCCCTCGATCATCCGCACCCC TCATGGCGTGGTCGTCGCCGGCGCCGACCAGCGCACCGCGATTGCGAATGACGCGCCGAACCACATCAACTTCGTCATGC GCAGGTCGCTTGACGGTGGCCGCACCTGGCTCGACATGCAGACCGTGATCGCCAATCCGGGCGAAGGCGTCGACGGCGCG TGCACAATCGACTCATGTCTTGTATGCGACGAACGCAATGGCCGTCTCACCGTCCTCATCGACCGCTTCGCCGGCGGCGT CGGGTTGCCGAACAACACGCCCGGCACCGGGGTCGACCGGCACGGGCGACCGTGCCTGTACGATCGCGCAGGCACACGCT ATGTACTCGCCGATGACGGCACGGTGCTTGACGGCGGCGGCGAGCGCACCGGATACCGGGTCGACGCGCACGGCAACGTG ACGCACGAGGGACGGGCCTCGGGCAACATCTACCTCAAGGAGGGCGCTGACCCCGACGAATCACTGCTCATCGAACGCAC GAGCTTCATCATCGAACTGCATTCCGACGATGACGGCGAGACGTGGAGCACACCACGCAACATCAACCACATGATCAAGG AGGATTGGATGCACTTCCTGGGCGTCTCGCCCGGCAACGGCATCCAGCTCCAGGCCTCCGAACATCGCGGGCGTCTGCTC GTCCCGTTCTACTGCACCGGCGCCTCACTCAAGCATTACTCGGGCGGAGCGCTCATCAGCGACGATGGCGGCGACACATG GCGACGTGGTTCGATGATCAACGACGGCCGCATCGTCAACGGCACCGCCGTCGACCCGAAGAACATCCGGGACGATGACG CGACCACGCACGAATCCGTGTTCGTCGAGCGCGCGGATGGCACCGTCGTGTGCTTCTTCCGCAACCAGAACCATGCCGGG CGCATCGGCGTCGCGCTCAGCCACGACGGCGGCGAGACATGGGATGACCTGTACTTCGACAAAGACGTCCCCGACATCTT CTGCCAACCGAACGCCGTGGCCTGCGCGCCGCGATCGGACACGATGGTGTTCGCGAACGCAAGCCAGATGCTGCCGTATC GCGGCAACGGGGTGCTGCGGCTGAGTCTGGACGGCGCACGCACATGGGCGGCGCATCGCTGCATCAACCCCTATCATTAC GGCTATCAGTGCATGACGATGCTGCCGGACGGCGAACTCGGATTACTCTGGGAGCGCGAGACCGCGGGATTGTACTTCAC CACGCTGCCGTTGAGCGTATTCGGCGCGGCCGAAACGCACTGA
Upstream 100 bases:
>100_bases CAGACGTCTGATGTTTCCCGTTGGTTGGATACCATGACTTCAGATGTCCCATTCATGGCACGGCATATATACGGGCCCGC TCAAAGGAGAGTCATTGACC
Downstream 100 bases:
>100_bases GGGCGTGTTCGGGAACACGTGTGCGACGCATGTTCCCGAACATGCCCCCACCGGCCGTTAATGGTCGAGCCGGGCGGCGA ACCAGCGCGTGATCGACGTC
Product: glycosyl hydrolase, BNR repeat-containing protein
Products: NA
Alternate protein names: Neuraminidase [H]
Number of amino acids: Translated: 760; Mature: 759
Protein sequence:
>760_residues MAASNPISWSQRTFPSPEGTIACRFRAHADGRIFDAVNGSANDAPLLICAIEHDALRVRATTPRQHVDFDIEDTTGIADG AMHTFALTFGEFGTRVYLDGSQCFSGTANLCPTTLTGTEGSGQGAIRLAGPSIDVTDMRLHAIPLTSESIAALTPRPAPD IDFAAAQLAPRDVRRVRTLRSGTIFMHFRVRGPRQYGTLLAAGERGEERLAVSIDDNGITMTAADGLYEPSTYHARGAWD DGRWHDLSIRSARGAIDMYVDGWHELHQAGQVFFGDWPQLDEVAIGQNTEGVRLMGEVRNGGVFTTPLTDGAIRRLSDAP ALTTTALFDKGYHGSVSYRIPSIIRTPHGVVVAGADQRTAIANDAPNHINFVMRRSLDGGRTWLDMQTVIANPGEGVDGA CTIDSCLVCDERNGRLTVLIDRFAGGVGLPNNTPGTGVDRHGRPCLYDRAGTRYVLADDGTVLDGGGERTGYRVDAHGNV THEGRASGNIYLKEGADPDESLLIERTSFIIELHSDDDGETWSTPRNINHMIKEDWMHFLGVSPGNGIQLQASEHRGRLL VPFYCTGASLKHYSGGALISDDGGDTWRRGSMINDGRIVNGTAVDPKNIRDDDATTHESVFVERADGTVVCFFRNQNHAG RIGVALSHDGGETWDDLYFDKDVPDIFCQPNAVACAPRSDTMVFANASQMLPYRGNGVLRLSLDGARTWAAHRCINPYHY GYQCMTMLPDGELGLLWERETAGLYFTTLPLSVFGAAETH
Sequences:
>Translated_760_residues MAASNPISWSQRTFPSPEGTIACRFRAHADGRIFDAVNGSANDAPLLICAIEHDALRVRATTPRQHVDFDIEDTTGIADG AMHTFALTFGEFGTRVYLDGSQCFSGTANLCPTTLTGTEGSGQGAIRLAGPSIDVTDMRLHAIPLTSESIAALTPRPAPD IDFAAAQLAPRDVRRVRTLRSGTIFMHFRVRGPRQYGTLLAAGERGEERLAVSIDDNGITMTAADGLYEPSTYHARGAWD DGRWHDLSIRSARGAIDMYVDGWHELHQAGQVFFGDWPQLDEVAIGQNTEGVRLMGEVRNGGVFTTPLTDGAIRRLSDAP ALTTTALFDKGYHGSVSYRIPSIIRTPHGVVVAGADQRTAIANDAPNHINFVMRRSLDGGRTWLDMQTVIANPGEGVDGA CTIDSCLVCDERNGRLTVLIDRFAGGVGLPNNTPGTGVDRHGRPCLYDRAGTRYVLADDGTVLDGGGERTGYRVDAHGNV THEGRASGNIYLKEGADPDESLLIERTSFIIELHSDDDGETWSTPRNINHMIKEDWMHFLGVSPGNGIQLQASEHRGRLL VPFYCTGASLKHYSGGALISDDGGDTWRRGSMINDGRIVNGTAVDPKNIRDDDATTHESVFVERADGTVVCFFRNQNHAG RIGVALSHDGGETWDDLYFDKDVPDIFCQPNAVACAPRSDTMVFANASQMLPYRGNGVLRLSLDGARTWAAHRCINPYHY GYQCMTMLPDGELGLLWERETAGLYFTTLPLSVFGAAETH >Mature_759_residues AASNPISWSQRTFPSPEGTIACRFRAHADGRIFDAVNGSANDAPLLICAIEHDALRVRATTPRQHVDFDIEDTTGIADGA MHTFALTFGEFGTRVYLDGSQCFSGTANLCPTTLTGTEGSGQGAIRLAGPSIDVTDMRLHAIPLTSESIAALTPRPAPDI DFAAAQLAPRDVRRVRTLRSGTIFMHFRVRGPRQYGTLLAAGERGEERLAVSIDDNGITMTAADGLYEPSTYHARGAWDD GRWHDLSIRSARGAIDMYVDGWHELHQAGQVFFGDWPQLDEVAIGQNTEGVRLMGEVRNGGVFTTPLTDGAIRRLSDAPA LTTTALFDKGYHGSVSYRIPSIIRTPHGVVVAGADQRTAIANDAPNHINFVMRRSLDGGRTWLDMQTVIANPGEGVDGAC TIDSCLVCDERNGRLTVLIDRFAGGVGLPNNTPGTGVDRHGRPCLYDRAGTRYVLADDGTVLDGGGERTGYRVDAHGNVT HEGRASGNIYLKEGADPDESLLIERTSFIIELHSDDDGETWSTPRNINHMIKEDWMHFLGVSPGNGIQLQASEHRGRLLV PFYCTGASLKHYSGGALISDDGGDTWRRGSMINDGRIVNGTAVDPKNIRDDDATTHESVFVERADGTVVCFFRNQNHAGR IGVALSHDGGETWDDLYFDKDVPDIFCQPNAVACAPRSDTMVFANASQMLPYRGNGVLRLSLDGARTWAAHRCINPYHYG YQCMTMLPDGELGLLWERETAGLYFTTLPLSVFGAAETH
Specific function: Sialidases have been suggested to be pathogenic factors in microbial infections [H]
COG id: COG4409
COG function: function code G; Neuraminidase (sialidase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 F5/8 type C domain [H]
Homologues:
Organism=Homo sapiens, GI4557791, Length=240, Percent_Identity=32.0833333333333, Blast_Score=73, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002860 - InterPro: IPR000421 - InterPro: IPR008985 - InterPro: IPR013320 - InterPro: IPR008979 - InterPro: IPR004124 - InterPro: IPR011040 [H]
Pfam domain/function: PF02012 BNR; PF00754 F5_F8_type_C; PF02973 Sialidase [H]
EC number: =3.2.1.18 [H]
Molecular weight: Translated: 82563; Mature: 82432
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASNPISWSQRTFPSPEGTIACRFRAHADGRIFDAVNGSANDAPLLICAIEHDALRVRA CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCEEEEEE TTPRQHVDFDIEDTTGIADGAMHTFALTFGEFGTRVYLDGSQCFSGTANLCPTTLTGTEG CCCHHHEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEECHHHCCCCCCCCCCEEECCCC SGQGAIRLAGPSIDVTDMRLHAIPLTSESIAALTPRPAPDIDFAAAQLAPRDVRRVRTLR CCCEEEEEECCCCCEECEEEEEEECCCCCCEEECCCCCCCCCHHHHHCCHHHHHHHHHHC SGTIFMHFRVRGPRQYGTLLAAGERGEERLAVSIDDNGITMTAADGLYEPSTYHARGAWD CCEEEEEEEECCCHHHCEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCEECCCCCC DGRWHDLSIRSARGAIDMYVDGWHELHQAGQVFFGDWPQLDEVAIGQNTEGVRLMGEVRN CCCEEEEEEECCCCEEEEEECCHHHHHHCCCEEECCCCCCCCEEECCCCCCEEEEEEECC GGVFTTPLTDGAIRRLSDAPALTTTALFDKGYHGSVSYRIPSIIRTPHGVVVAGADQRTA CCEEEECCCCHHHHHHCCCCCEEEEEHHCCCCCCEEEEECCHHHCCCCCEEEECCCCCEE IANDAPNHINFVMRRSLDGGRTWLDMQTVIANPGEGVDGACTIDSCLVCDERNGRLTVLI ECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEECEEEEEECCCCEEEEEE DRFAGGVGLPNNTPGTGVDRHGRPCLYDRAGTRYVLADDGTVLDGGGERTGYRVDAHGNV EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCEEECCCCCCCCEEEECCCCC THEGRASGNIYLKEGADPDESLLIERTSFIIELHSDDDGETWSTPRNINHMIKEDWMHFL CCCCCCCCCEEEECCCCCCHHEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH GVSPGNGIQLQASEHRGRLLVPFYCTGASLKHYSGGALISDDGGDTWRRGSMINDGRIVN CCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCEEEECCCCCCCCCCCCCCCCEEEE GTAVDPKNIRDDDATTHESVFVERADGTVVCFFRNQNHAGRIGVALSHDGGETWDDLYFD CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCHHHCEEC KDVPDIFCQPNAVACAPRSDTMVFANASQMLPYRGNGVLRLSLDGARTWAAHRCINPYHY CCCCCEEECCCEEEECCCCCEEEEECCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCC GYQCMTMLPDGELGLLWERETAGLYFTTLPLSVFGAAETH CEEEEEECCCCCEEEEEEECCCCEEEEEECEEEECCCCCC >Mature Secondary Structure AASNPISWSQRTFPSPEGTIACRFRAHADGRIFDAVNGSANDAPLLICAIEHDALRVRA CCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEEEECCCEEEEEE TTPRQHVDFDIEDTTGIADGAMHTFALTFGEFGTRVYLDGSQCFSGTANLCPTTLTGTEG CCCHHHEEEEECCCCCCCCCCEEEEEEEECCCCCEEEEECHHHCCCCCCCCCCEEECCCC SGQGAIRLAGPSIDVTDMRLHAIPLTSESIAALTPRPAPDIDFAAAQLAPRDVRRVRTLR CCCEEEEEECCCCCEECEEEEEEECCCCCCEEECCCCCCCCCHHHHHCCHHHHHHHHHHC SGTIFMHFRVRGPRQYGTLLAAGERGEERLAVSIDDNGITMTAADGLYEPSTYHARGAWD CCEEEEEEEECCCHHHCEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCEECCCCCC DGRWHDLSIRSARGAIDMYVDGWHELHQAGQVFFGDWPQLDEVAIGQNTEGVRLMGEVRN CCCEEEEEEECCCCEEEEEECCHHHHHHCCCEEECCCCCCCCEEECCCCCCEEEEEEECC GGVFTTPLTDGAIRRLSDAPALTTTALFDKGYHGSVSYRIPSIIRTPHGVVVAGADQRTA CCEEEECCCCHHHHHHCCCCCEEEEEHHCCCCCCEEEEECCHHHCCCCCEEEECCCCCEE IANDAPNHINFVMRRSLDGGRTWLDMQTVIANPGEGVDGACTIDSCLVCDERNGRLTVLI ECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEECEEEEEECCCCEEEEEE DRFAGGVGLPNNTPGTGVDRHGRPCLYDRAGTRYVLADDGTVLDGGGERTGYRVDAHGNV EECCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCEEECCCCCCCCEEEECCCCC THEGRASGNIYLKEGADPDESLLIERTSFIIELHSDDDGETWSTPRNINHMIKEDWMHFL CCCCCCCCCEEEECCCCCCHHEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH GVSPGNGIQLQASEHRGRLLVPFYCTGASLKHYSGGALISDDGGDTWRRGSMINDGRIVN CCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCEEEECCCCCCCCCCCCCCCCEEEE GTAVDPKNIRDDDATTHESVFVERADGTVVCFFRNQNHAGRIGVALSHDGGETWDDLYFD CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCCCHHHCEEC KDVPDIFCQPNAVACAPRSDTMVFANASQMLPYRGNGVLRLSLDGARTWAAHRCINPYHY CCCCCEEECCCEEEECCCCCEEEEECCCCCCEECCCCEEEEEECCCCHHHHHHCCCCCCC GYQCMTMLPDGELGLLWERETAGLYFTTLPLSVFGAAETH CEEEEEECCCCCEEEEEEECCCCEEEEEECEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2034213 [H]