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The map label for this gene is xylR [H]

Identifier: 213691476

GI number: 213691476

Start: 647960

End: 649348

Strand: Direct

Name: xylR [H]

Synonym: Blon_0573

Alternate gene names: 213691476

Gene position: 647960-649348 (Clockwise)

Preceding gene: 213691472

Following gene: 213691477

Centisome position: 22.87

GC content: 61.48

Gene sequence:

>1389_bases
ATGGCAAGTCTACGCAGGATCAATCAGGAGGATCTGCGCAACCATAATTTGTCGGTGGTTCTCGACACTTTGTTGCGCGC
GGAGAAACCCATAAGCAGGGCCGACCTGGCCAAGGAAACGGGCCTGACCAAGGCCACGCTTTCGCTGTTGGCCTCGATGC
TTATCGATAGTGGCGTGGTGCAGGAAGGCGAGTCGGTCGTCTCCACCACATATGGGCGGCCCAGCACGCCGCTGGAGATT
CATGGCGGGTCCATCGCCGGCATCGGCCTGCAGATCAACACCGATGGCTACGGTTGCCTGGCACTCGATCTGAACGGCGA
CACTCTCGGTCAGGAGTGGGTGAGTGAGGATATGACCGGCACTGACCCGTACGAGATCTTCGCCAAGCTCGATGCGATGA
CCTTCCCGTTGGAAAGCCGACTCAAACGACGTGGCTGCAAAGTGGTGGGAGCCGGGCTTGCGCTGCCGGGCATCGTCACC
GACGACATGTGGCTGTTGGTGGCCCGCAATCTGGGTTGGGAAAACGTCAACCTCACCCGGTTCAACGTGGTACGCCGGCT
GGATGTGGTGGCCGGTAACGAAGCGAAGATGGCCGCCATCGCTCAGATTCCGGGGTATGCCACCGAACGTGCGTCCTTCC
TGAATGTGGTGGATCGCACGGATTCCTTTATTTACCTGTCTACCGATATCGGCGTCGGCGGCGCGGTGGTGCGTGACGGC
GAAGTGGTGATGGGCTCGCACGGATTCGCCGGCGAGATCGGCCATCTGTCCGTGGCGATGGATGGGCCGTTGTGCAGCTG
CGGGCGCCACGGGTGCCTTGAGGCGTTTGCGGGCCGTCGCGCCTTGGTCGAGGCTGCCGGCATTGCCGAAGATGGGGATG
CCACCAGCAGCGAGGCCATCGATACATTCCTCCAGCGTTGGCGTGCGGGGGATCCAGACGTGGCCAAAGTGGTCGATCAG
GCCGCTGATGCGCTGGTTTCCGCCATCGCTTCCACCGTGAATCTGGTGGATGTCGATACGGTGCTGTTGGGCGGACTGTG
GACGCACTTCGGCGACGAGCTGGCCACCGTGCTTGAAGGCCGGCTGCGTTCGGAAATTCTGGGATACCCGAATGTGAAGA
TCCGCGTGTTCGTGCCGCCGGTGGCGCTGCATCCCTCGCTATATGGCGCGGCCGAAATGGGCTTGCGACGGTTCATCGAG
AACCCGTTGGGGTACACATGGGGGAGAAGTAGCGCCGGGAGATGCTGCTTGTTGTGCTGGCGGGTGCATGGCATGGGTGC
ATGGCGCGTGTGCCGGCGTTGGTGGGTTCATGCTACACTTTGCAAGTTGGCTGTTTTACGCAGCGAACGTGGGGCCGTAG
CTCAGTCGGTTAGAGCATGCGACTCATAA

Upstream 100 bases:

>100_bases
GTCCGATTCAATCGTTTGACGCACAATATCAATGGTGTGATCTATGGATGAGAGCGTCCACAAGACGCTCAAAGCTTAGG
GTGCAAGGAGGTAGGAGCCA

Downstream 100 bases:

>100_bases
TCGCCCGGTCCAGGGTTCAAGCCCCTGCGGCCCCACTCTTTTGCGTCGCCTCCTGCGGCGGCACAGCGCGTCTTCACGTC
CAGACAGGCGCGTACAATCC

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MASLRRINQEDLRNHNLSVVLDTLLRAEKPISRADLAKETGLTKATLSLLASMLIDSGVVQEGESVVSTTYGRPSTPLEI
HGGSIAGIGLQINTDGYGCLALDLNGDTLGQEWVSEDMTGTDPYEIFAKLDAMTFPLESRLKRRGCKVVGAGLALPGIVT
DDMWLLVARNLGWENVNLTRFNVVRRLDVVAGNEAKMAAIAQIPGYATERASFLNVVDRTDSFIYLSTDIGVGGAVVRDG
EVVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAEDGDATSSEAIDTFLQRWRAGDPDVAKVVDQ
AADALVSAIASTVNLVDVDTVLLGGLWTHFGDELATVLEGRLRSEILGYPNVKIRVFVPPVALHPSLYGAAEMGLRRFIE
NPLGYTWGRSSAGRCCLLCWRVHGMGAWRVCRRWWVHATLCKLAVLRSERGAVAQSVRACDS

Sequences:

>Translated_462_residues
MASLRRINQEDLRNHNLSVVLDTLLRAEKPISRADLAKETGLTKATLSLLASMLIDSGVVQEGESVVSTTYGRPSTPLEI
HGGSIAGIGLQINTDGYGCLALDLNGDTLGQEWVSEDMTGTDPYEIFAKLDAMTFPLESRLKRRGCKVVGAGLALPGIVT
DDMWLLVARNLGWENVNLTRFNVVRRLDVVAGNEAKMAAIAQIPGYATERASFLNVVDRTDSFIYLSTDIGVGGAVVRDG
EVVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAEDGDATSSEAIDTFLQRWRAGDPDVAKVVDQ
AADALVSAIASTVNLVDVDTVLLGGLWTHFGDELATVLEGRLRSEILGYPNVKIRVFVPPVALHPSLYGAAEMGLRRFIE
NPLGYTWGRSSAGRCCLLCWRVHGMGAWRVCRRWWVHATLCKLAVLRSERGAVAQSVRACDS
>Mature_461_residues
ASLRRINQEDLRNHNLSVVLDTLLRAEKPISRADLAKETGLTKATLSLLASMLIDSGVVQEGESVVSTTYGRPSTPLEIH
GGSIAGIGLQINTDGYGCLALDLNGDTLGQEWVSEDMTGTDPYEIFAKLDAMTFPLESRLKRRGCKVVGAGLALPGIVTD
DMWLLVARNLGWENVNLTRFNVVRRLDVVAGNEAKMAAIAQIPGYATERASFLNVVDRTDSFIYLSTDIGVGGAVVRDGE
VVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAEDGDATSSEAIDTFLQRWRAGDPDVAKVVDQA
ADALVSAIASTVNLVDVDTVLLGGLWTHFGDELATVLEGRLRSEILGYPNVKIRVFVPPVALHPSLYGAAEMGLRRFIEN
PLGYTWGRSSAGRCCLLCWRVHGMGAWRVCRRWWVHATLCKLAVLRSERGAVAQSVRACDS

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=349, Percent_Identity=22.6361031518625, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082127, Length=375, Percent_Identity=24.8, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787363, Length=268, Percent_Identity=26.1194029850746, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI87082230, Length=264, Percent_Identity=28.030303030303, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 49678; Mature: 49547

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLRRINQEDLRNHNLSVVLDTLLRAEKPISRADLAKETGLTKATLSLLASMLIDSGVV
CCCHHHCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHH
QEGESVVSTTYGRPSTPLEIHGGSIAGIGLQINTDGYGCLALDLNGDTLGQEWVSEDMTG
HCCCHHHHCCCCCCCCCEEECCCEEEEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCC
TDPYEIFAKLDAMTFPLESRLKRRGCKVVGAGLALPGIVTDDMWLLVARNLGWENVNLTR
CCHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCHH
FNVVRRLDVVAGNEAKMAAIAQIPGYATERASFLNVVDRTDSFIYLSTDIGVGGAVVRDG
HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECC
EVVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAEDGDATSSEAI
CEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHH
DTFLQRWRAGDPDVAKVVDQAADALVSAIASTVNLVDVDTVLLGGLWTHFGDELATVLEG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLRSEILGYPNVKIRVFVPPVALHPSLYGAAEMGLRRFIENPLGYTWGRSSAGRCCLLCW
HHHHHHCCCCCCEEEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
RVHGMGAWRVCRRWWVHATLCKLAVLRSERGAVAQSVRACDS
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
>Mature Secondary Structure 
ASLRRINQEDLRNHNLSVVLDTLLRAEKPISRADLAKETGLTKATLSLLASMLIDSGVV
CCHHHCCHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHH
QEGESVVSTTYGRPSTPLEIHGGSIAGIGLQINTDGYGCLALDLNGDTLGQEWVSEDMTG
HCCCHHHHCCCCCCCCCEEECCCEEEEEEEEEECCCCEEEEEECCCCHHHHHHHHCCCCC
TDPYEIFAKLDAMTFPLESRLKRRGCKVVGAGLALPGIVTDDMWLLVARNLGWENVNLTR
CCHHHHHHHHHHHCCCHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCHH
FNVVRRLDVVAGNEAKMAAIAQIPGYATERASFLNVVDRTDSFIYLSTDIGVGGAVVRDG
HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECC
EVVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAEDGDATSSEAI
CEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHH
DTFLQRWRAGDPDVAKVVDQAADALVSAIASTVNLVDVDTVLLGGLWTHFGDELATVLEG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLRSEILGYPNVKIRVFVPPVALHPSLYGAAEMGLRRFIENPLGYTWGRSSAGRCCLLCW
HHHHHHCCCCCCEEEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
RVHGMGAWRVCRRWWVHATLCKLAVLRSERGAVAQSVRACDS
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]