| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is insI1 [H]
Identifier: 213691358
GI number: 213691358
Start: 519112
End: 520188
Strand: Direct
Name: insI1 [H]
Synonym: Blon_0449
Alternate gene names: 213691358
Gene position: 519112-520188 (Clockwise)
Preceding gene: 213691356
Following gene: 213691359
Centisome position: 18.33
GC content: 69.17
Gene sequence:
>1077_bases ATGGGAGAAGTATATTCGCACCTGTCGGAAGAGGAACGCCAGGTCATCCAGATCGAGGCAGGCAACGGCGCCAGCATACG CGGGATCGGCGCGATGCCGGGCCGCAGCCCGTCCGGCACCAGCCGGGAGATCAAGCGCAACACATGGTTCCCGTCCAACG AGAACGAGTCGTACCGCCCGTACCGGCCGAAAAGACTGAAGACGGGGCCATGGACCGGCCGCTACCACATCGCCGGGCCC GCGCAGCGCAAGGCCGACCGCAGGAGATCCAAGCCACGAAAGCCCTACCGGCTGTCGCACGACCGCCTGTGGGCGCGGGT GGCCGAATGGCTGGGCCGCGGCTGGTCGCCGCCGCCCGTCAGCGGCAGGCTGCGCGTCCTGTGGCCGGACGATGCGCTCA TGCGCGTGTGCCCGGAGACCATCTACCGATGGGTCTACTCCAGCAGGCCGCTTCGGGAACGCTGGGCGCGGTGCCTGCCG CGAGGGCACAGGCGGCGCCGCAGGCACGGCGGCAGGAGGACGTCGCGCTTCCCGATCCCCGGCCGAGCGCCCATCTCCGA ACGCCCGCCGGAGGCCGACGGCAGGAGCGCGTTCGGCCATTGGGAGGCCGACAGCGTCATCGGAGTGGGATGCAACCCGC ACACCGAGGTGGAGAGGAGGACCAGGTTCCTCATGGCCCGCGTCGTTCCGGACAAGACCGCCGGCGAGAGCGTCGGGGCG CAGCCGGACATGTTCTCGCCGCTGCCGGCCGGCGCGCGCGCCGGCGTCACGCACGACAACGGCACCGAGTTCGCCCACCA CGAAAGGCTGCGCGACGGGCTGGGCATGGCCACGTACTTCGCCGACCCGTACTCCAGCCGGCGGCGGGGAAGCAACGAGA ACGGGAACGGCATGATCCGCCGGTATCTGCCCGAACGCTGCGAGATACGGATGGACATGGCAAAGGAGGTCAGGGAGATC GTCGACGAGGCCGACAACCGCCCCATGCGCGTGCTCGGCTACCGCACGCCCGCCGAGGCGTTCGCCGACGAACTGCTGGA ATTACAGGACCAACAAGGGTGTTGCACTTCTAAATAG
Upstream 100 bases:
>100_bases AGGAAACATATAAAAGTCAATACCCGTTGTCTAAATGAAAGTGCAACACCCGTTAGATTGGAAATTGCCTAGAAAACCAG TCCGAAGGGATGTCGCACCT
Downstream 100 bases:
>100_bases ACATCGGGCAATCTAAAAGGTTCTAAAAGGCTTCGGGGCAAACCTCGCATTTCCGAAGCGCCCATGCATGTCGTCGATTA TGGATTCAGTAAGAGCATCA
Product: Integrase, catalytic region
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 358; Mature: 357
Protein sequence:
>358_residues MGEVYSHLSEEERQVIQIEAGNGASIRGIGAMPGRSPSGTSREIKRNTWFPSNENESYRPYRPKRLKTGPWTGRYHIAGP AQRKADRRRSKPRKPYRLSHDRLWARVAEWLGRGWSPPPVSGRLRVLWPDDALMRVCPETIYRWVYSSRPLRERWARCLP RGHRRRRRHGGRRTSRFPIPGRAPISERPPEADGRSAFGHWEADSVIGVGCNPHTEVERRTRFLMARVVPDKTAGESVGA QPDMFSPLPAGARAGVTHDNGTEFAHHERLRDGLGMATYFADPYSSRRRGSNENGNGMIRRYLPERCEIRMDMAKEVREI VDEADNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK
Sequences:
>Translated_358_residues MGEVYSHLSEEERQVIQIEAGNGASIRGIGAMPGRSPSGTSREIKRNTWFPSNENESYRPYRPKRLKTGPWTGRYHIAGP AQRKADRRRSKPRKPYRLSHDRLWARVAEWLGRGWSPPPVSGRLRVLWPDDALMRVCPETIYRWVYSSRPLRERWARCLP RGHRRRRRHGGRRTSRFPIPGRAPISERPPEADGRSAFGHWEADSVIGVGCNPHTEVERRTRFLMARVVPDKTAGESVGA QPDMFSPLPAGARAGVTHDNGTEFAHHERLRDGLGMATYFADPYSSRRRGSNENGNGMIRRYLPERCEIRMDMAKEVREI VDEADNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK >Mature_357_residues GEVYSHLSEEERQVIQIEAGNGASIRGIGAMPGRSPSGTSREIKRNTWFPSNENESYRPYRPKRLKTGPWTGRYHIAGPA QRKADRRRSKPRKPYRLSHDRLWARVAEWLGRGWSPPPVSGRLRVLWPDDALMRVCPETIYRWVYSSRPLRERWARCLPR GHRRRRRHGGRRTSRFPIPGRAPISERPPEADGRSAFGHWEADSVIGVGCNPHTEVERRTRFLMARVVPDKTAGESVGAQ PDMFSPLPAGARAGVTHDNGTEFAHHERLRDGLGMATYFADPYSSRRRGSNENGNGMIRRYLPERCEIRMDMAKEVREIV DEADNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG2826
COG function: function code L; Transposase and inactivated derivatives, IS30 family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 integrase catalytic domain [H]
Homologues:
Organism=Escherichia coli, GI1790736, Length=346, Percent_Identity=33.2369942196532, Blast_Score=154, Evalue=8e-39, Organism=Escherichia coli, GI1787671, Length=346, Percent_Identity=33.2369942196532, Blast_Score=154, Evalue=8e-39, Organism=Escherichia coli, GI1786450, Length=346, Percent_Identity=33.2369942196532, Blast_Score=154, Evalue=9e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001584 - InterPro: IPR012337 - InterPro: IPR001598 [H]
Pfam domain/function: PF00665 rve [H]
EC number: NA
Molecular weight: Translated: 40962; Mature: 40831
Theoretical pI: Translated: 10.74; Mature: 10.74
Prosite motif: PS50994 INTEGRASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGEVYSHLSEEERQVIQIEAGNGASIRGIGAMPGRSPSGTSREIKRNTWFPSNENESYRP CCHHHHHHHHHCCEEEEEECCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC YRPKRLKTGPWTGRYHIAGPAQRKADRRRSKPRKPYRLSHDRLWARVAEWLGRGWSPPPV CCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC SGRLRVLWPDDALMRVCPETIYRWVYSSRPLRERWARCLPRGHRRRRRHGGRRTSRFPIP CCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC GRAPISERPPEADGRSAFGHWEADSVIGVGCNPHTEVERRTRFLMARVVPDKTAGESVGA CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC QPDMFSPLPAGARAGVTHDNGTEFAHHERLRDGLGMATYFADPYSSRRRGSNENGNGMIR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHCCCCCCCCCHHH RYLPERCEIRMDMAKEVREIVDEADNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK HHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure GEVYSHLSEEERQVIQIEAGNGASIRGIGAMPGRSPSGTSREIKRNTWFPSNENESYRP CHHHHHHHHHCCEEEEEECCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC YRPKRLKTGPWTGRYHIAGPAQRKADRRRSKPRKPYRLSHDRLWARVAEWLGRGWSPPPV CCCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC SGRLRVLWPDDALMRVCPETIYRWVYSSRPLRERWARCLPRGHRRRRRHGGRRTSRFPIP CCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCC GRAPISERPPEADGRSAFGHWEADSVIGVGCNPHTEVERRTRFLMARVVPDKTAGESVGA CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC QPDMFSPLPAGARAGVTHDNGTEFAHHERLRDGLGMATYFADPYSSRRRGSNENGNGMIR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCHHHHHCCCCCCCCCHHH RYLPERCEIRMDMAKEVREIVDEADNRPMRVLGYRTPAEAFADELLELQDQQGCCTSK HHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]