| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is femB [H]
Identifier: 213691327
GI number: 213691327
Start: 475618
End: 476928
Strand: Direct
Name: femB [H]
Synonym: Blon_0414
Alternate gene names: 213691327
Gene position: 475618-476928 (Clockwise)
Preceding gene: 213691326
Following gene: 213691328
Centisome position: 16.79
GC content: 59.8
Gene sequence:
>1311_bases ATGACGCAATCCGATGCAGGCGTCGCCTCGCTCACCCCTACCAAGATCACTCCTGCCGAGCTGGATGCGTTCTCCGCAGC TCAAGTGCAAGGTAGTTTCCAGCAGACCTCGCAGATGGCCGCCATGGGTGCGTTCAACGGTCCGGTGGACTATGTGGGTG TCAAGCGCGGTGACAAGCTGATTGCCGCCTGCTACGTGGTGTACACGCGGTCCCGTTTCGGTTTGGAAGGCTCGGTCTGG TGCGGACCGCTGTGCGATTATGACAATCCACAGGTGGTTGAGGCGATGACCGAAGCCCTGCGTCGTTCGGCCAAGGCCCA TCACGCCATCAGCGTATCCTGCTGGCCGGCCGCAGTCTACCGTCTGCATGATCTGGACGGCAAGCCGACCAGCGACCCGG ACACCACGATGATGGACAACATGGCCCGCTTCGGTTGGAAACATGGCGGCTTCACCGTGGGCTACGAATCCGTGGTGAAC CGCTGGAACTTCGTCAAGGGGCTTGACGGCATTCATAACGAGAAGGAACTGCTGGCCTCGTTCTCCAAGTACCGCCGTAA GAACATCCGCATCGCCCAGGATTCCGGTCTGCGCGTGCGCCGACTGGAACGCGGCGAACTGAGCATTTTCGTCAAGCTGT GCGATATGAGCGCCGCACGTCAAGGCTTCAAGAGCCGCGATCTGGCCTACTATGAGCGTCTGTTCGATACCTTCGGCGAC CTGATCGAGTTCAAGGTGGTCGAAACCCATTTCGACGAATATCTGGACACCCTGCAATCCAAGCTGAATGCGGCCTCCAA AGACAAGCGCAACCTCGAACGCCTGCTCCAGCGCGCGCAACAGCAGCCGGAAGGCACGGCCAAGAAGGGTGCCTCCGACC CGGCAACGCTGGAAAAGCGCATCGCCACCGCAGACAAGAAGATTGCGGCGCTGGAAAAGACCATCGGCGAAGTCAATGGC ATCATCGCCTCGGACGGCCCGGTCATTCCGGTGGAAGCCGGTGTCTACTTCTGGCATCCGAACGAGGTCGTCTGCCTGTC CAGCGGCGAGGACGATCGTTTCATGGATTACTACCCGTCTTCCCTAATCCACTTCGAGGCGATGCTTGACTGCATCGCCC GTGGCGTGGAGCGCTTCAACTTCTATGGCATTTCCGGCATTTTCGACGCCAACGATCCTTCCTACGGCGTCTGGCAGTTC AAGACTCGCTTCGGCGGATTCGTGGAAGAGCTTCCGGGCAAGTTCACGCTGCCGGTGGACGGACTGCGCTTCGGTGTATC CGAAGCCGCACACAAGCTGCTGCATCGCTGA
Upstream 100 bases:
>100_bases TTTGCGCACAAGCTGCTGTCGCGGTAAACGGACGCAGCACACAGGCCATTCCAGAGCCCAGAGTAACGATCAGAGTAACG ACAAGTAAGAAGGTTCGATT
Downstream 100 bases:
>100_bases CAAACAGTGGCGAGCACGGACACAGAAATAAGGCACAGGTGACGACGAGATGAGCGCGACTGTGAATCGAACAGATACGA CGTATACGTTTGGCGTGATT
Product: Methicillin resistance protein
Products: NA
Alternate protein names: Factor essential for expression of methicillin resistance B [H]
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTQSDAGVASLTPTKITPAELDAFSAAQVQGSFQQTSQMAAMGAFNGPVDYVGVKRGDKLIAACYVVYTRSRFGLEGSVW CGPLCDYDNPQVVEAMTEALRRSAKAHHAISVSCWPAAVYRLHDLDGKPTSDPDTTMMDNMARFGWKHGGFTVGYESVVN RWNFVKGLDGIHNEKELLASFSKYRRKNIRIAQDSGLRVRRLERGELSIFVKLCDMSAARQGFKSRDLAYYERLFDTFGD LIEFKVVETHFDEYLDTLQSKLNAASKDKRNLERLLQRAQQQPEGTAKKGASDPATLEKRIATADKKIAALEKTIGEVNG IIASDGPVIPVEAGVYFWHPNEVVCLSSGEDDRFMDYYPSSLIHFEAMLDCIARGVERFNFYGISGIFDANDPSYGVWQF KTRFGGFVEELPGKFTLPVDGLRFGVSEAAHKLLHR
Sequences:
>Translated_436_residues MTQSDAGVASLTPTKITPAELDAFSAAQVQGSFQQTSQMAAMGAFNGPVDYVGVKRGDKLIAACYVVYTRSRFGLEGSVW CGPLCDYDNPQVVEAMTEALRRSAKAHHAISVSCWPAAVYRLHDLDGKPTSDPDTTMMDNMARFGWKHGGFTVGYESVVN RWNFVKGLDGIHNEKELLASFSKYRRKNIRIAQDSGLRVRRLERGELSIFVKLCDMSAARQGFKSRDLAYYERLFDTFGD LIEFKVVETHFDEYLDTLQSKLNAASKDKRNLERLLQRAQQQPEGTAKKGASDPATLEKRIATADKKIAALEKTIGEVNG IIASDGPVIPVEAGVYFWHPNEVVCLSSGEDDRFMDYYPSSLIHFEAMLDCIARGVERFNFYGISGIFDANDPSYGVWQF KTRFGGFVEELPGKFTLPVDGLRFGVSEAAHKLLHR >Mature_435_residues TQSDAGVASLTPTKITPAELDAFSAAQVQGSFQQTSQMAAMGAFNGPVDYVGVKRGDKLIAACYVVYTRSRFGLEGSVWC GPLCDYDNPQVVEAMTEALRRSAKAHHAISVSCWPAAVYRLHDLDGKPTSDPDTTMMDNMARFGWKHGGFTVGYESVVNR WNFVKGLDGIHNEKELLASFSKYRRKNIRIAQDSGLRVRRLERGELSIFVKLCDMSAARQGFKSRDLAYYERLFDTFGDL IEFKVVETHFDEYLDTLQSKLNAASKDKRNLERLLQRAQQQPEGTAKKGASDPATLEKRIATADKKIAALEKTIGEVNGI IASDGPVIPVEAGVYFWHPNEVVCLSSGEDDRFMDYYPSSLIHFEAMLDCIARGVERFNFYGISGIFDANDPSYGVWQFK TRFGGFVEELPGKFTLPVDGLRFGVSEAAHKLLHR
Specific function: Catalyzes the formation of the pentaglycine interpeptide bridge, which is characteristic of the S.aureus peptidoglycan. Adds glycines 4 and 5 of the pentaglycine bridge, using glycyl- tRNA(Gly) as donor. Involved in resistance to methicillin [H]
COG id: COG2348
COG function: function code V; Uncharacterized protein involved in methicillin resistance
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the femABX family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016181 - InterPro: IPR003447 [H]
Pfam domain/function: PF02388 FemAB [H]
EC number: NA
Molecular weight: Translated: 48585; Mature: 48453
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSDAGVASLTPTKITPAELDAFSAAQVQGSFQQTSQMAAMGAFNGPVDYVGVKRGDKL CCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHH IAACYVVYTRSRFGLEGSVWCGPLCDYDNPQVVEAMTEALRRSAKAHHAISVSCWPAAVY HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHH RLHDLDGKPTSDPDTTMMDNMARFGWKHGGFTVGYESVVNRWNFVKGLDGIHNEKELLAS HHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHH FSKYRRKNIRIAQDSGLRVRRLERGELSIFVKLCDMSAARQGFKSRDLAYYERLFDTFGD HHHHHHCCCEEECCCCCEEEEECCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHH LIEFKVVETHFDEYLDTLQSKLNAASKDKRNLERLLQRAQQQPEGTAKKGASDPATLEKR HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHH IATADKKIAALEKTIGEVNGIIASDGPVIPVEAGVYFWHPNEVVCLSSGEDDRFMDYYPS HHHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCEEEECCCEEEEEECCCCCCHHHHCCH SLIHFEAMLDCIARGVERFNFYGISGIFDANDPSYGVWQFKTRFGGFVEELPGKFTLPVD HHHHHHHHHHHHHHHHHHHEEECCCEEECCCCCCCCEEEEHHHHCHHHHHCCCCEECCCC GLRFGVSEAAHKLLHR HHHHHHHHHHHHHHCC >Mature Secondary Structure TQSDAGVASLTPTKITPAELDAFSAAQVQGSFQQTSQMAAMGAFNGPVDYVGVKRGDKL CCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHH IAACYVVYTRSRFGLEGSVWCGPLCDYDNPQVVEAMTEALRRSAKAHHAISVSCWPAAVY HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHH RLHDLDGKPTSDPDTTMMDNMARFGWKHGGFTVGYESVVNRWNFVKGLDGIHNEKELLAS HHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHH FSKYRRKNIRIAQDSGLRVRRLERGELSIFVKLCDMSAARQGFKSRDLAYYERLFDTFGD HHHHHHCCCEEECCCCCEEEEECCCCEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHH LIEFKVVETHFDEYLDTLQSKLNAASKDKRNLERLLQRAQQQPEGTAKKGASDPATLEKR HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHH IATADKKIAALEKTIGEVNGIIASDGPVIPVEAGVYFWHPNEVVCLSSGEDDRFMDYYPS HHHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCEEEECCCEEEEEECCCCCCHHHHCCH SLIHFEAMLDCIARGVERFNFYGISGIFDANDPSYGVWQFKTRFGGFVEELPGKFTLPVD HHHHHHHHHHHHHHHHHHHEEECCCEEECCCCCCCCEEEEHHHHCHHHHHCCCCEECCCC GLRFGVSEAAHKLLHR HHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA