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The map label for this gene is yjgF [C]

Identifier: 213691234

GI number: 213691234

Start: 368104

End: 368493

Strand: Direct

Name: yjgF [C]

Synonym: Blon_0317

Alternate gene names: 213691234

Gene position: 368104-368493 (Clockwise)

Preceding gene: 213691232

Following gene: 213691235

Centisome position: 12.99

GC content: 63.08

Gene sequence:

>390_bases
ATGAGCGAAAAGATGGAAGCCGTAGCCACTTCCGAGGCGCCGGCCGCGCTGGGCGCATACAGCCAGGCGGTGAAGGCCAA
TGGCTTCGTGTTCGTATCCGGCCAGCTGGGCATCGATCCGGCCACCGGCGAACTGGCGGGCGAGACCGCTGGAGAGCAGG
CCGCGCAGGCGTTGAAGAACATCAAGCACATTCTCGACACTGCCGGCACCGGCATCGAGCATGTGTGCCGTGCCACCATC
TACCTGAAGAACGTCGAGGACTTCAAGGAAGTGGACGCACGTTACGCTGAGGCGTTCATCGGCTCCGTCAAGCCCGCCCG
CGTGGCCTTTGGCAACAACATGATTCCCAAGGGCGCGCTCGTGGAGATTGACGCCATCGCGGTGGAGTGA

Upstream 100 bases:

>100_bases
TGCCAATCGTTGCCGATCGTGCGATTGGTCGTAGCCGGTGGTGATGTGTACCGGCGCCGGCCGCAGCAGGTGGGCGCCCC
AAGATGAGAAGGAGCACAAT

Downstream 100 bases:

>100_bases
TTCGAACGTTTCCCCGGCGGCCCGTCTGCGCGCATGGTGTGTGCAGACGGGCCGCCGCGTATTGTGCGACGCATTCCCGG
GAATGTCGCGCTAGGCGGGG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPATGELAGETAGEQAAQALKNIKHILDTAGTGIEHVCRATI
YLKNVEDFKEVDARYAEAFIGSVKPARVAFGNNMIPKGALVEIDAIAVE

Sequences:

>Translated_129_residues
MSEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPATGELAGETAGEQAAQALKNIKHILDTAGTGIEHVCRATI
YLKNVEDFKEVDARYAEAFIGSVKPARVAFGNNMIPKGALVEIDAIAVE
>Mature_128_residues
SEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPATGELAGETAGEQAAQALKNIKHILDTAGTGIEHVCRATIY
LKNVEDFKEVDARYAEAFIGSVKPARVAFGNNMIPKGALVEIDAIAVE

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=39.344262295082, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=37.7952755905512, Blast_Score=86, Evalue=9e-19,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=32.258064516129, Blast_Score=72, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI25148896, Length=130, Percent_Identity=41.5384615384615, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71982075, Length=130, Percent_Identity=41.5384615384615, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71982068, Length=130, Percent_Identity=41.5384615384615, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322138, Length=125, Percent_Identity=35.2, Blast_Score=86, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6320899, Length=106, Percent_Identity=32.0754716981132, Blast_Score=67, Evalue=9e-13,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=38.0165289256198, Blast_Score=81, Evalue=2e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13438; Mature: 13307

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPATGELAGETAGEQAAQALKN
CCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
IKHILDTAGTGIEHVCRATIYLKNVEDFKEVDARYAEAFIGSVKPARVAFGNNMIPKGAL
HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCE
VEIDAIAVE
EEEEEEECC
>Mature Secondary Structure 
SEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPATGELAGETAGEQAAQALKN
CCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
IKHILDTAGTGIEHVCRATIYLKNVEDFKEVDARYAEAFIGSVKPARVAFGNNMIPKGAL
HHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCE
VEIDAIAVE
EEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]