| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is ybjZ [C]
Identifier: 213691121
GI number: 213691121
Start: 239972
End: 241195
Strand: Direct
Name: ybjZ [C]
Synonym: Blon_0200
Alternate gene names: 213691121
Gene position: 239972-241195 (Clockwise)
Preceding gene: 213691120
Following gene: 213691122
Centisome position: 8.47
GC content: 63.32
Gene sequence:
>1224_bases ATGACCAACACCGGTATGTTCTTCAGAATGCTGTTCAGCGCCGTGTTCCGCCGGCGTTCGCGCGCGGTGATGGCCGTGGT GGCGTCGCTGGTCGGCGCGGCCACACTGTTCTGCCTGGCGATGATCTGCCTCGCCGTGCCGCAGCAGATGAACGAGGAGA TGCGTGCGTACGGCGCGAACCTGATTGTCACACCCACCGAATCGACCAATGCCGACGGCAAGGCCGGCATCGACAAGGCG ATGGTGCAGCACACCACTGAAATGGTCAAGGCCAAGGGTTCCGCGAAATACGCCACTTACCGCTACGAGAACGTGCGCGT CAACGCCTCGCCGTACGTGATGGCCGGCGTGAATGCGGCGCAGGTCAAGAACCTCAACCATCACTGGGTGGTCGACGGCT CGTGGCCGACCGACGGCAAGGTGCTGGTCGGACGTGACATCGCCGACGCCATCGGTCTGAGAATCGGCTCCGCCATCACC ATCGGCTACCGTGCATCCGATAACGCCAGCACCAACGGCACTTCGTCGAACTCCTCGATCGACCAGCAAACCAAAGACGG CCGTGTCTCCAGTGACATCATGGACACCTCCGGCACCGAATTCCGCGTGGCCGGCATCGTGGACACCGGCGGCAGCGAAG ACTCGATCATCTACGCCACCAACGCCGACGTCAACAAGCTCACCGGCATCACGCGCGGCGTGGACGTCATCGAGTATTCG GCCGGCTCCAGCGACCTCGCAGGCCTGGTGTCCAGCATCAACGACATGACCTCCATGCACGTCAAGGCGCAGCAGGTCAC CAAGATCACCGCCTCCGACACCCGCATCATCACCATGCTGCAGACGCTGTTCTGGATCGTCTCGTTGGTGGTGCTGGTGC TGACGCTCGTCGGCGTCGGCACCACAATCAGCTCGATCGTCTCGCAGCGACGCAACGAGATCGGCCTGCGCAAGGCCCTC GGTGCCAGCTCGCGTGCCATCGGCACCGAGTTCTACATCGAATCATCGCTCTACGGCCTGATTGGCGGCCTCGTCGGCAC CGCAATCGGCTACGGACTTGCCAGTTGGCTGTGCGTGGCGGTGTTCGAACGCTCCATCGGATTCAACTGGTGGCTGGCGC TGATCTCCGTGCTGTTCAGCGCGCTGGTCGCCATCGTCGCCTCCATCCCGCCCGTCCACCGCGCCACCCGCATCGACCCC GCCGTCGTGCTTCGCGAAGAATAA
Upstream 100 bases:
>100_bases GGCGTCCGCCTCCTCGATTCGTTCGATTCTGAATCTCAAGCCCGCGGAGGTGCTCCATGGCCGCTGAGTTTATCTACGTA GGTGTGGAAGGAGGAAACCG
Downstream 100 bases:
>100_bases AGAAAGAGAAACGTCATGCTACTTGAACTCGACCACATCTCGAAGATCTACGGCGACCTGCATGCCGTGGACGACCTCAA TTTGACCGTGCCGGAAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MTNTGMFFRMLFSAVFRRRSRAVMAVVASLVGAATLFCLAMICLAVPQQMNEEMRAYGANLIVTPTESTNADGKAGIDKA MVQHTTEMVKAKGSAKYATYRYENVRVNASPYVMAGVNAAQVKNLNHHWVVDGSWPTDGKVLVGRDIADAIGLRIGSAIT IGYRASDNASTNGTSSNSSIDQQTKDGRVSSDIMDTSGTEFRVAGIVDTGGSEDSIIYATNADVNKLTGITRGVDVIEYS AGSSDLAGLVSSINDMTSMHVKAQQVTKITASDTRIITMLQTLFWIVSLVVLVLTLVGVGTTISSIVSQRRNEIGLRKAL GASSRAIGTEFYIESSLYGLIGGLVGTAIGYGLASWLCVAVFERSIGFNWWLALISVLFSALVAIVASIPPVHRATRIDP AVVLREE
Sequences:
>Translated_407_residues MTNTGMFFRMLFSAVFRRRSRAVMAVVASLVGAATLFCLAMICLAVPQQMNEEMRAYGANLIVTPTESTNADGKAGIDKA MVQHTTEMVKAKGSAKYATYRYENVRVNASPYVMAGVNAAQVKNLNHHWVVDGSWPTDGKVLVGRDIADAIGLRIGSAIT IGYRASDNASTNGTSSNSSIDQQTKDGRVSSDIMDTSGTEFRVAGIVDTGGSEDSIIYATNADVNKLTGITRGVDVIEYS AGSSDLAGLVSSINDMTSMHVKAQQVTKITASDTRIITMLQTLFWIVSLVVLVLTLVGVGTTISSIVSQRRNEIGLRKAL GASSRAIGTEFYIESSLYGLIGGLVGTAIGYGLASWLCVAVFERSIGFNWWLALISVLFSALVAIVASIPPVHRATRIDP AVVLREE >Mature_406_residues TNTGMFFRMLFSAVFRRRSRAVMAVVASLVGAATLFCLAMICLAVPQQMNEEMRAYGANLIVTPTESTNADGKAGIDKAM VQHTTEMVKAKGSAKYATYRYENVRVNASPYVMAGVNAAQVKNLNHHWVVDGSWPTDGKVLVGRDIADAIGLRIGSAITI GYRASDNASTNGTSSNSSIDQQTKDGRVSSDIMDTSGTEFRVAGIVDTGGSEDSIIYATNADVNKLTGITRGVDVIEYSA GSSDLAGLVSSINDMTSMHVKAQQVTKITASDTRIITMLQTLFWIVSLVVLVLTLVGVGTTISSIVSQRRNEIGLRKALG ASSRAIGTEFYIESSLYGLIGGLVGTAIGYGLASWLCVAVFERSIGFNWWLALISVLFSALVAIVASIPPVHRATRIDPA VVLREE
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 43441; Mature: 43310
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNTGMFFRMLFSAVFRRRSRAVMAVVASLVGAATLFCLAMICLAVPQQMNEEMRAYGAN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC LIVTPTESTNADGKAGIDKAMVQHTTEMVKAKGSAKYATYRYENVRVNASPYVMAGVNAA EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEECCCHH QVKNLNHHWVVDGSWPTDGKVLVGRDIADAIGLRIGSAITIGYRASDNASTNGTSSNSSI HHCCCCCEEEEECCCCCCCEEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC DQQTKDGRVSSDIMDTSGTEFRVAGIVDTGGSEDSIIYATNADVNKLTGITRGVDVIEYS CHHHCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCEEEEC AGSSDLAGLVSSINDMTSMHVKAQQVTKITASDTRIITMLQTLFWIVSLVVLVLTLVGVG CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC TTISSIVSQRRNEIGLRKALGASSRAIGTEFYIESSLYGLIGGLVGTAIGYGLASWLCVA HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH VFERSIGFNWWLALISVLFSALVAIVASIPPVHRATRIDPAVVLREE HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECC >Mature Secondary Structure TNTGMFFRMLFSAVFRRRSRAVMAVVASLVGAATLFCLAMICLAVPQQMNEEMRAYGAN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCC LIVTPTESTNADGKAGIDKAMVQHTTEMVKAKGSAKYATYRYENVRVNASPYVMAGVNAA EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEECCCHH QVKNLNHHWVVDGSWPTDGKVLVGRDIADAIGLRIGSAITIGYRASDNASTNGTSSNSSI HHCCCCCEEEEECCCCCCCEEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC DQQTKDGRVSSDIMDTSGTEFRVAGIVDTGGSEDSIIYATNADVNKLTGITRGVDVIEYS CHHHCCCCCCHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHHHHCCCCEEEEC AGSSDLAGLVSSINDMTSMHVKAQQVTKITASDTRIITMLQTLFWIVSLVVLVLTLVGVG CCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC TTISSIVSQRRNEIGLRKALGASSRAIGTEFYIESSLYGLIGGLVGTAIGYGLASWLCVA HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH VFERSIGFNWWLALISVLFSALVAIVASIPPVHRATRIDPAVVLREE HHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]