| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is gltX [H]
Identifier: 213691112
GI number: 213691112
Start: 226745
End: 228265
Strand: Direct
Name: gltX [H]
Synonym: Blon_0191
Alternate gene names: 213691112
Gene position: 226745-228265 (Clockwise)
Preceding gene: 213691109
Following gene: 213691115
Centisome position: 8.0
GC content: 63.77
Gene sequence:
>1521_bases ATGACTGATGCTGAAAACACCAAACCCGAACTGCCCAAGAACGTTCGTGTTCGCTTCTGCCCGTCGCCGACCGGTACCCC GCACGTCGGCATGATTCGCACCGCCCTGTTCAACTGGGCGGAGGCCCGCGCCACCGGCGGCAAGCTGGTCTTCCGCATCG AAGACACCGACGCCGTGCGCGACAGCGAGGAAAGCTATAACCAGATTCTCGAATCCCTGCGTTGGCTGGGTATCGACTGG GACGAGGGCATCGATGTGGGTGGCCCTCACGGCCCGTACCGCCAGTCCGAGCGTACCGCCATCTACAAGGATGTTGCCGC CAAGCTGCTCGAAGCCGGCTACGCCTACGAGTCCTTCTCCACCCCCGAGGAGATCAAGGAACGCAATCTCGCCGCGGGTC GTCCGGCTGAGTTTGGCTACGACGGTTACGATCGCAACCTGACCGATGAGCAGAAGGAGGTTTTCCGTGCCGAAGGCCGC AAGCCGGCGCTGCGTTTGCGCATGCCCGATGAGGATATCGCCTTCGACGATCTGATTCGTGGCACCATCGAGTTCAAGGC CGGCTCCGTGCCGGACTATGTGATCGTGCGTCCGAACGGCGACCCGCTGTACACGCTGACCAATCCGGTCGATGACGCGA TGATGGAAATCAACGTCGTGCTGCGTGGCGAGGACCTCCTGAGCTCCACCCCGCGCCAGATCGTGCTTTACCGTTACCTT ATGGAACTTGGCATCGCCAAGGAGATGCCGCTGTTCGGCCACATGCCGTACGTGATGGGCCAGGGCAACAAGAAGCTCTC CAAGCGCGACCCGGAGTCCAACCTGTTCAACCACCGCGACAACGGCTTCATCCGCGAGGGCCTGCTCAACTACCTGGCCC TGCTCGGCTGGTCTATCGCCCCGGACCGCGACGTGTTCTCCATGGACGAGATGATCGAGAAGTTCGACGTGCGCGACGTC AAGGCCAACCCGGCCCGCTTCGACATCGACAAGGCCATCTCCATCAACGCCGAGCACATCCGTATGCTCGAGCCCGAGGA CTTCCTGCGCCGCTCGGTGCCGTACCTGCATCGTGACGGCGTGGTCGGTGCCGACGACTGGGATGCCCTGACCGACCGTG AGCGTGAGGTGCTGACCGCCGCCGCTCCGCTGGTTCAGCCGCGTGTGCGTCTGCTGGGTGAGGTCGCCGGCATGGTCGGC TCCCTGCTGTCCACCGAGGAATATCTGGAGCCTGCGGATGACGCCAAGAAGCAGCTCAAGGATTCCGCCGGCGAAGTGCT GGACGCCGCCATCGCCGCCCTCGAGGGTGTGGATGAGGCCGATTGGAAGACCGACAACCTGCATGAGACCCTGAACAAGG CTCTGGTTGAGGAGGGCGGCTACAAGCCGCGCCTCGCCTTCGGCCCGGTCCGTGTGGCCATGTCCGGCCGCCGCGTCTCC CCGCCGCTGTTCGAGTCCATGGAGATCGTTGGCAAGCCGATCACCGTCGCCCGTCTCAAGGGCCTGCGGGCGCATCTGTG A
Upstream 100 bases:
>100_bases GAGGCATCACGCGGCGGGCTCATCGAATGACATGAATAACAAGGAATGCCTCCGCCGTCGCGGGCCGTCGCGTCCGGCGC GCGCGGCACAATAGGGGACT
Downstream 100 bases:
>100_bases TGCGTCGTCCACCGCACGCCGGCGGATGATGGGAGCGTGACGCATGGCGGGCATCCGTACATACGGATGCCCGCTTTCGC GTTGCATGGGGTGTTCCCGC
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MTDAENTKPELPKNVRVRFCPSPTGTPHVGMIRTALFNWAEARATGGKLVFRIEDTDAVRDSEESYNQILESLRWLGIDW DEGIDVGGPHGPYRQSERTAIYKDVAAKLLEAGYAYESFSTPEEIKERNLAAGRPAEFGYDGYDRNLTDEQKEVFRAEGR KPALRLRMPDEDIAFDDLIRGTIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMEINVVLRGEDLLSSTPRQIVLYRYL MELGIAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFNHRDNGFIREGLLNYLALLGWSIAPDRDVFSMDEMIEKFDVRDV KANPARFDIDKAISINAEHIRMLEPEDFLRRSVPYLHRDGVVGADDWDALTDREREVLTAAAPLVQPRVRLLGEVAGMVG SLLSTEEYLEPADDAKKQLKDSAGEVLDAAIAALEGVDEADWKTDNLHETLNKALVEEGGYKPRLAFGPVRVAMSGRRVS PPLFESMEIVGKPITVARLKGLRAHL
Sequences:
>Translated_506_residues MTDAENTKPELPKNVRVRFCPSPTGTPHVGMIRTALFNWAEARATGGKLVFRIEDTDAVRDSEESYNQILESLRWLGIDW DEGIDVGGPHGPYRQSERTAIYKDVAAKLLEAGYAYESFSTPEEIKERNLAAGRPAEFGYDGYDRNLTDEQKEVFRAEGR KPALRLRMPDEDIAFDDLIRGTIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMEINVVLRGEDLLSSTPRQIVLYRYL MELGIAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFNHRDNGFIREGLLNYLALLGWSIAPDRDVFSMDEMIEKFDVRDV KANPARFDIDKAISINAEHIRMLEPEDFLRRSVPYLHRDGVVGADDWDALTDREREVLTAAAPLVQPRVRLLGEVAGMVG SLLSTEEYLEPADDAKKQLKDSAGEVLDAAIAALEGVDEADWKTDNLHETLNKALVEEGGYKPRLAFGPVRVAMSGRRVS PPLFESMEIVGKPITVARLKGLRAHL >Mature_505_residues TDAENTKPELPKNVRVRFCPSPTGTPHVGMIRTALFNWAEARATGGKLVFRIEDTDAVRDSEESYNQILESLRWLGIDWD EGIDVGGPHGPYRQSERTAIYKDVAAKLLEAGYAYESFSTPEEIKERNLAAGRPAEFGYDGYDRNLTDEQKEVFRAEGRK PALRLRMPDEDIAFDDLIRGTIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMEINVVLRGEDLLSSTPRQIVLYRYLM ELGIAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFNHRDNGFIREGLLNYLALLGWSIAPDRDVFSMDEMIEKFDVRDVK ANPARFDIDKAISINAEHIRMLEPEDFLRRSVPYLHRDGVVGADDWDALTDREREVLTAAAPLVQPRVRLLGEVAGMVGS LLSTEEYLEPADDAKKQLKDSAGEVLDAAIAALEGVDEADWKTDNLHETLNKALVEEGGYKPRLAFGPVRVAMSGRRVSP PLFESMEIVGKPITVARLKGLRAHL
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=487, Percent_Identity=31.6221765913758, Blast_Score=201, Evalue=1e-51, Organism=Escherichia coli, GI1788743, Length=497, Percent_Identity=32.7967806841046, Blast_Score=246, Evalue=3e-66, Organism=Escherichia coli, GI226510925, Length=298, Percent_Identity=28.5234899328859, Blast_Score=100, Evalue=3e-22, Organism=Caenorhabditis elegans, GI71993394, Length=312, Percent_Identity=35.8974358974359, Blast_Score=184, Evalue=7e-47, Organism=Saccharomyces cerevisiae, GI6324540, Length=360, Percent_Identity=35, Blast_Score=191, Evalue=3e-49, Organism=Drosophila melanogaster, GI24665321, Length=497, Percent_Identity=31.3883299798793, Blast_Score=217, Evalue=2e-56,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 56763; Mature: 56632
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS01094 UPF0076
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDAENTKPELPKNVRVRFCPSPTGTPHVGMIRTALFNWAEARATGGKLVFRIEDTDAVR CCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHC DSEESYNQILESLRWLGIDWDEGIDVGGPHGPYRQSERTAIYKDVAAKLLEAGYAYESFS CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC TPEEIKERNLAAGRPAEFGYDGYDRNLTDEQKEVFRAEGRKPALRLRMPDEDIAFDDLIR CHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH GTIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMEINVVLRGEDLLSSTPRQIVLYRYL HHEEEECCCCCCEEEECCCCCEEEEECCCHHHHHEEEEEEEECCHHHHCCHHHHHHHHHH MELGIAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFNHRDNGFIREGLLNYLALLGWSIA HHHCCHHCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCC PDRDVFSMDEMIEKFDVRDVKANPARFDIDKAISINAEHIRMLEPEDFLRRSVPYLHRDG CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHEEECCHHHHHHHCCCCCCCCC VVGADDWDALTDREREVLTAAAPLVQPRVRLLGEVAGMVGSLLSTEEYLEPADDAKKQLK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH DSAGEVLDAAIAALEGVDEADWKTDNLHETLNKALVEEGGYKPRLAFGPVRVAMSGRRVS HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCC PPLFESMEIVGKPITVARLKGLRAHL CHHHHHHHHHCCCHHHHHHHHHHHCC >Mature Secondary Structure TDAENTKPELPKNVRVRFCPSPTGTPHVGMIRTALFNWAEARATGGKLVFRIEDTDAVR CCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHC DSEESYNQILESLRWLGIDWDEGIDVGGPHGPYRQSERTAIYKDVAAKLLEAGYAYESFS CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC TPEEIKERNLAAGRPAEFGYDGYDRNLTDEQKEVFRAEGRKPALRLRMPDEDIAFDDLIR CHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH GTIEFKAGSVPDYVIVRPNGDPLYTLTNPVDDAMMEINVVLRGEDLLSSTPRQIVLYRYL HHEEEECCCCCCEEEECCCCCEEEEECCCHHHHHEEEEEEEECCHHHHCCHHHHHHHHHH MELGIAKEMPLFGHMPYVMGQGNKKLSKRDPESNLFNHRDNGFIREGLLNYLALLGWSIA HHHCCHHCCCCCCCCCCEECCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCC PDRDVFSMDEMIEKFDVRDVKANPARFDIDKAISINAEHIRMLEPEDFLRRSVPYLHRDG CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCHHHEEECCHHHHHHHCCCCCCCCC VVGADDWDALTDREREVLTAAAPLVQPRVRLLGEVAGMVGSLLSTEEYLEPADDAKKQLK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH DSAGEVLDAAIAALEGVDEADWKTDNLHETLNKALVEEGGYKPRLAFGPVRVAMSGRRVS HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCEEEEECCCCCC PPLFESMEIVGKPITVARLKGLRAHL CHHHHHHHHHCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA