| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213690964
Identifier: 213690964
GI number: 213690964
Start: 42898
End: 44142
Strand: Direct
Name: 213690964
Synonym: Blon_0040
Alternate gene names: NA
Gene position: 42898-44142 (Clockwise)
Preceding gene: 213690963
Following gene: 213690965
Centisome position: 1.51
GC content: 65.14
Gene sequence:
>1245_bases GTGTACGATTTTCATTCGCCAAAACAAAAAACCGCGATTGGAAGCCAGGAGACGGAACCAAGACCCTCGAACATCATACA GATCGACCAGAACCTGCTCGAGACCAGGCTCGACCGCCTGGTCGCCGAAAAGGTCGCCGAGCTATTGAACGCGATGCTCG ACGCCGAGGCCGACGAGATCGCCAAAGCCGCCAAGTACGAGCGCACCGGGGAGCGGAAGGCGTACAGGGCCGGCCACTAC GACCGGAGCCTGACCGCCAAGGCCGGCAGGCTCGCGTTGAAGGTGCCCAAACTCAAGGGCGCGGTCTTCGAGTCCGCGGT CATCGAACGATACCGGAGACGCGAGGAGAGTGTCGAGGAGGCCCTCATCGACATGTACCTGGCCGGCGTGAGCACCCGGC AGGTGGACGACATCAGCCAATTGCTGTGGGGCGACAGGATGCCGTCCCAGACCCTGAGCGACAAGCTCAAGAAGGTGTAC GGGGAGATCGAGGCGTGGCGCACGAGGCCGTTGGAGGACGAGTACCCGTACGTGTTCATGGACGGCGTGTGGCACAAGCG TTCATGGGGCGGGCACGTGGAGAACGTCAGCGTCCCGGTCGCCATCGGAGTCAACGCGGAGGGGCACCGCGAGGTGATCG GCGTGGCCGAGGGCATGAAGGAGGACAGGGACAGCTGGGAGCAGTTCGTCCGCTCCATGATCGAACGCGGCCTGAAGGGC GTGCGCCTGGTGGTCGGCGACCGGTGCGCCGGACTCGTCGCCACGGTCGGCTCGATGCTGCCCAAGGCGAGATACCAGCG GTGCATGGTGCATTTCATGCGCAACGTGCTCTCGAAGACGCCGCCGACACACCGCGAATGGGCGTCCGCCGCCCTCAAGG CCATATTCGCCATGGAATCCCGGGAATCCGCCCTGGCCAAGGCCGAACAGGTCGCCACGGAGATGGAATCCAGGAGGCTC AAGGCCGCCGCGAGCTGCCTGCGCGAGGGCGTCGGCGAGACGACGACCTACCTGCTGGACGAGTTCCCGGACGGGCACCG CAGGAGGATCCGCACGAACAACATGATCGAGCGGCCGGACAGGGAGATCCGCCGGCGCACGCGCGTGGTGGGCGGCTTCC CCGACGGGAACAGCGCGTTGATGCTCATATGCGCCCGCATCCGTCACGTCACCGCGAACGAATGGTCGACCCGCCGCTAT CTCGACATGTCCCGGCTCGGTGACAACCTCGTGGAAGCGAACTGA
Upstream 100 bases:
>100_bases CCGCCTGACCGTCCAAAAAAACATCCGCACCCCCTAACGCCCGATTTTTTGCGCACTTTCGGATTCCGGGTCTGACGTAA GAGGGCATGGCCCGCGTCCT
Downstream 100 bases:
>100_bases CTATCGCGCCATGGACGGCCACGATCCAAAGTGCGCAACTTTTCGGGCACTACCCAGGCCGATACTTGGCTGATCGAAGA TCATACCGACGATTTCTTCT
Product: transposase, mutator type
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MYDFHSPKQKTAIGSQETEPRPSNIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIAKAAKYERTGERKAYRAGHY DRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVY GEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVPVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKG VRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRL KAAASCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERPDREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRY LDMSRLGDNLVEAN
Sequences:
>Translated_414_residues MYDFHSPKQKTAIGSQETEPRPSNIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIAKAAKYERTGERKAYRAGHY DRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVY GEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVPVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKG VRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRL KAAASCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERPDREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRY LDMSRLGDNLVEAN >Mature_414_residues MYDFHSPKQKTAIGSQETEPRPSNIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEIAKAAKYERTGERKAYRAGHY DRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEEALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVY GEIEAWRTRPLEDEYPYVFMDGVWHKRSWGGHVENVSVPVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKG VRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMESRESALAKAEQVATEMESRRL KAAASCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERPDREIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRY LDMSRLGDNLVEAN
Specific function: Required for the transposition of the insertion element [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase mutator family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001207 [H]
Pfam domain/function: PF00872 Transposase_mut [H]
EC number: NA
Molecular weight: Translated: 47048; Mature: 47048
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYDFHSPKQKTAIGSQETEPRPSNIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEI CCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AKAAKYERTGERKAYRAGHYDRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEE HHHHHHHHCCCHHHHHCCCCCCHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH ALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVYGEIEAWRTRPLEDEYPYVFM HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE DGVWHKRSWGGHVENVSVPVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKG CCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMES EEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RESALAKAEQVATEMESRRLKAAASCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCH REIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRYLDMSRLGDNLVEAN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHCCC >Mature Secondary Structure MYDFHSPKQKTAIGSQETEPRPSNIIQIDQNLLETRLDRLVAEKVAELLNAMLDAEADEI CCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AKAAKYERTGERKAYRAGHYDRSLTAKAGRLALKVPKLKGAVFESAVIERYRRREESVEE HHHHHHHHCCCHHHHHCCCCCCHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHH ALIDMYLAGVSTRQVDDISQLLWGDRMPSQTLSDKLKKVYGEIEAWRTRPLEDEYPYVFM HHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEE DGVWHKRSWGGHVENVSVPVAIGVNAEGHREVIGVAEGMKEDRDSWEQFVRSMIERGLKG CCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VRLVVGDRCAGLVATVGSMLPKARYQRCMVHFMRNVLSKTPPTHREWASAALKAIFAMES EEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH RESALAKAEQVATEMESRRLKAAASCLREGVGETTTYLLDEFPDGHRRRIRTNNMIERPD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCH REIRRRTRVVGGFPDGNSALMLICARIRHVTANEWSTRRYLDMSRLGDNLVEAN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7768811; 11481430 [H]