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The map label for this gene is yggB [C]

Identifier: 213159051

GI number: 213159051

Start: 3875725

End: 3876705

Strand: Direct

Name: yggB [C]

Synonym: AB57_3760

Alternate gene names: 213159051

Gene position: 3875725-3876705 (Clockwise)

Preceding gene: 213159049

Following gene: 213159056

Centisome position: 95.68

GC content: 38.12

Gene sequence:

>981_bases
GTGGCTGATGAACAAAAATCCTTAACGGATGTTGCAAAAAATACAGGCGAACTTTTGCAAGAAGCAGGTACTAAAACCAC
TCAAACAGTTTTAGCGCATACCGAGAAATACCATGATGCCTATACCACTATCGACAAAATTGTAGATAGTTTTTGGGAAC
GTGTACCTTATATCTGCATTGCAATTGTTGTTTTTCTTATTTTTTGGCTACTGACCAAATTATTTAAGTTCTTTGTTCGT
AAGACTTTAGAAAATCGCTCTTATACTCGTCAAAATCTTGTTTTAGTTTTAAACCGTGTCGGTAGTACAGCGATTTTATT
CTTTGGTTTCTTAATAGCTCTCGTCATTATGATTCCGGGGTTCACACCAGGCCAGCTTATGAGTGCGCTAGGTATTGGTT
CGGTCGCCATTGGTTTTGCATTTAAAGATATTTTCCAAAACCTACTTTCAGGTATTTTGATTTTATTGAGCGAGCCATTC
CGTATTGGCGATTCAATTGTGGTGAATTCACTTGAAGGAACTGTAGAAGACATCCAGATCCGTGCAACCTTCCTACGCTC
ACCGGATGGTCGCCGTATTGTTATTCCAAATGCAACGGTTTATACAAGTGCCTTAACTGTTAATACTGCTTATCAACAAC
GACGCTGCGAGTTTGTAGTCGGAATTGGCTATGACGATGATGAGCAAAAAGCAAAACAGATTATTTTAGATATTCTCAAC
AATGACCGAAATGTACTGAGTCAGCCTGCGTTTTCGGTTAATGTCACAGCTTTAGCAGATTTCTCGGTTAACTTGACTGT
ACGCTGGTGGGTTGATACCACTGAAACTGATATCTCTTCATCTATTAGTAATATTCAAGCTCAAGTAAAACAAGCTTTCA
ATGAAAATGATATTGATATTCCTTACCCAATTCAGGAATTAAAAATGGTATCTAATCCACCAGCTTTAAACCCTGAAACA
TCAGCTAAACAAACGACCTAA

Upstream 100 bases:

>100_bases
TTATTATTTAGATGAACTCATTATAGTAGGCGCACATTTTATCTCCTACTATGATGGAAGCTGAAAAGGCTTTCTGAATT
TATTCAATTAGAGACTTGTC

Downstream 100 bases:

>100_bases
AATATAAGAAATAGACGTTTCGGTTCTTAAAATACGGTTGCCTAAGCTCATAGCTTGGCAGCCGTTTTTTATGAGCAAAT
CTACTTCGTAAGGAATAAAT

Product: MscS Mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MADEQKSLTDVAKNTGELLQEAGTKTTQTVLAHTEKYHDAYTTIDKIVDSFWERVPYICIAIVVFLIFWLLTKLFKFFVR
KTLENRSYTRQNLVLVLNRVGSTAILFFGFLIALVIMIPGFTPGQLMSALGIGSVAIGFAFKDIFQNLLSGILILLSEPF
RIGDSIVVNSLEGTVEDIQIRATFLRSPDGRRIVIPNATVYTSALTVNTAYQQRRCEFVVGIGYDDDEQKAKQIILDILN
NDRNVLSQPAFSVNVTALADFSVNLTVRWWVDTTETDISSSISNIQAQVKQAFNENDIDIPYPIQELKMVSNPPALNPET
SAKQTT

Sequences:

>Translated_326_residues
MADEQKSLTDVAKNTGELLQEAGTKTTQTVLAHTEKYHDAYTTIDKIVDSFWERVPYICIAIVVFLIFWLLTKLFKFFVR
KTLENRSYTRQNLVLVLNRVGSTAILFFGFLIALVIMIPGFTPGQLMSALGIGSVAIGFAFKDIFQNLLSGILILLSEPF
RIGDSIVVNSLEGTVEDIQIRATFLRSPDGRRIVIPNATVYTSALTVNTAYQQRRCEFVVGIGYDDDEQKAKQIILDILN
NDRNVLSQPAFSVNVTALADFSVNLTVRWWVDTTETDISSSISNIQAQVKQAFNENDIDIPYPIQELKMVSNPPALNPET
SAKQTT
>Mature_325_residues
ADEQKSLTDVAKNTGELLQEAGTKTTQTVLAHTEKYHDAYTTIDKIVDSFWERVPYICIAIVVFLIFWLLTKLFKFFVRK
TLENRSYTRQNLVLVLNRVGSTAILFFGFLIALVIMIPGFTPGQLMSALGIGSVAIGFAFKDIFQNLLSGILILLSEPFR
IGDSIVVNSLEGTVEDIQIRATFLRSPDGRRIVIPNATVYTSALTVNTAYQQRRCEFVVGIGYDDDEQKAKQIILDILNN
DRNVLSQPAFSVNVTALADFSVNLTVRWWVDTTETDISSSISNIQAQVKQAFNENDIDIPYPIQELKMVSNPPALNPETS
AKQTT

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=184, Percent_Identity=29.8913043478261, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786670, Length=253, Percent_Identity=27.2727272727273, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787591, Length=214, Percent_Identity=26.6355140186916, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367355, Length=189, Percent_Identity=26.984126984127, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 36427; Mature: 36296

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEQKSLTDVAKNTGELLQEAGTKTTQTVLAHTEKYHDAYTTIDKIVDSFWERVPYICI
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIVVFLIFWLLTKLFKFFVRKTLENRSYTRQNLVLVLNRVGSTAILFFGFLIALVIMIPG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
FTPGQLMSALGIGSVAIGFAFKDIFQNLLSGILILLSEPFRIGDSIVVNSLEGTVEDIQI
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCHHHHHE
RATFLRSPDGRRIVIPNATVYTSALTVNTAYQQRRCEFVVGIGYDDDEQKAKQIILDILN
EEEEECCCCCCEEEECCCEEEEHEEEEHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
NDRNVLSQPAFSVNVTALADFSVNLTVRWWVDTTETDISSSISNIQAQVKQAFNENDIDI
CCHHHHHCCCCEEEEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PYPIQELKMVSNPPALNPETSAKQTT
CCCHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADEQKSLTDVAKNTGELLQEAGTKTTQTVLAHTEKYHDAYTTIDKIVDSFWERVPYICI
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIVVFLIFWLLTKLFKFFVRKTLENRSYTRQNLVLVLNRVGSTAILFFGFLIALVIMIPG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
FTPGQLMSALGIGSVAIGFAFKDIFQNLLSGILILLSEPFRIGDSIVVNSLEGTVEDIQI
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCHHHHHE
RATFLRSPDGRRIVIPNATVYTSALTVNTAYQQRRCEFVVGIGYDDDEQKAKQIILDILN
EEEEECCCCCCEEEECCCEEEEHEEEEHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC
NDRNVLSQPAFSVNVTALADFSVNLTVRWWVDTTETDISSSISNIQAQVKQAFNENDIDI
CCHHHHHCCCCEEEEEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PYPIQELKMVSNPPALNPETSAKQTT
CCCHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]