Click here to switch to the map view.

The map label for this gene is ybgF [H]

Identifier: 213158960

GI number: 213158960

Start: 3773230

End: 3774642

Strand: Direct

Name: ybgF [H]

Synonym: AB57_3661

Alternate gene names: 213158960

Gene position: 3773230-3774642 (Clockwise)

Preceding gene: 213158959

Following gene: 213158961

Centisome position: 93.15

GC content: 41.76

Gene sequence:

>1413_bases
ATGCAGCCATCTGACAAACAACTAGATGCTCAGCATCAGAACAGTACTGCACCTTTAAAAAGAGCCATGAGTACCCGCCA
CCTTGTCATGTTATCGCTAGGTGGAGCAATCGGTACTGGTTTATTTTTGGGTTCAGGGGAAGTCATTTCACAAACTGGAC
CTATTGGCGCAATTATTGCCTATATTCTTGGGGGTGCAATTGCTTACATGGTCATGCTCTGTTTAGGCGAGCTGGCTGTA
CATATGCCCGTTTCGGGTTCTTTCGGTGCATACGCTCGAAAGTACATTAGTCCAAGTACAGGCTACATGATTTCATGGAT
GTACTGGCTAACATGGACAGCAACGCTAGGAACCGAGTTTACCGCCGCTGCTCTACTTATGCAGGAATGGTTTCCACAAA
TTTCAATGTGGATCTGGACACTTATTTTTGCAGTAACTATTTTCGGGTTAAATATCAGCTCAACCCGAGTATTTGCCGAG
TCAGAGTTCTGGCTAGCGCTGGTTAAGGTCATTACCGTCATTGCTTTTATTGTGCTTGGATTATTAGCAATTTTTGGTTT
AATTCCTTTCCACGGCGCTCAAACTGCTCCATTGTTTAGTAATTTAACTGCCCAAGGTTGGTTCCCACACGGTTTTCTTC
CTATTTTCACCACTATGCTCATTGTCAACTTTGCTTTCTCTGGAACAGAGTTAATTGGCGTAGCTGCTGGCGAAACTAAA
GATCCGGCTCAGAATGTCCCTAAAGCGATTAATGCTGCAATCTGGCGTCTTCTGATTTTCTTTGTAGGCACCATTATTGT
AATTAGTGCATTACTTCCTTTCCAACTTGCTGGTTTAGGTGGTGACAACGTAAGTAATAGTCCTTTCGTTACCGTATTTA
ATTACATCGGTATTCCATATGCAGATGACATCATCCGTTTTGTTATTATTACTGCACTACTCTCAGCCGCAAACTCGGGA
TTATATGCAGCTTCACGTATGATGTGGTCTTTATCGGAGCAAAAACTCCTTCCGGGTGTATTTGCAACACTTTCAAAAAG
CGGAACACCTATTGTTGCTTTAGTTGTAACGATGTTCGGCGCAATTCCAGGCTTATTATCAGAACAATTTGCTCCTGAAA
CCATCTTTAAAAACTTGCTAGGTGTTGCAGCTTTTACCATGGTTATTGTCTGGATGAGCATTTGTTTAAGCCAGTTCAAT
TTCCGTCGACAATGGTACCGTTCTGGACATACGGTTAGCGATTTAAAATATGCAGCACCGTTATTTCCTATCGTTCCAAT
TTTAGGTTTTCTTTTCTGCTTTATTACATGTTTAAGTATGGCGGCAGATCCTGAAATGCGTGCTGGCTTTATAGGTTGCT
TTAATTTTTACTGCCTTGTGCTATCTCAGCTACTTTATTTTCTATCGAAATAA

Upstream 100 bases:

>100_bases
CTATCGTCACCTTCCTGTCTATTCTTTGACTGCTTCTTGATTGCACATTTGTCTATTTTATCTAAAATAGCGTCTTTCTC
AAATTCTCTCAATGTGTAAT

Downstream 100 bases:

>100_bases
AGCTTAAGTGTTTGTAATTTAAAAAGTGTAGCAAAAAGCTACACTTTTTTTTGCTTAGAGACTGGCTTTATATAATCTAC
CGTTGTAGATTTAAATTTAT

Product: amino-acid permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MQPSDKQLDAQHQNSTAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVISQTGPIGAIIAYILGGAIAYMVMLCLGELAV
HMPVSGSFGAYARKYISPSTGYMISWMYWLTWTATLGTEFTAAALLMQEWFPQISMWIWTLIFAVTIFGLNISSTRVFAE
SEFWLALVKVITVIAFIVLGLLAIFGLIPFHGAQTAPLFSNLTAQGWFPHGFLPIFTTMLIVNFAFSGTELIGVAAGETK
DPAQNVPKAINAAIWRLLIFFVGTIIVISALLPFQLAGLGGDNVSNSPFVTVFNYIGIPYADDIIRFVIITALLSAANSG
LYAASRMMWSLSEQKLLPGVFATLSKSGTPIVALVVTMFGAIPGLLSEQFAPETIFKNLLGVAAFTMVIVWMSICLSQFN
FRRQWYRSGHTVSDLKYAAPLFPIVPILGFLFCFITCLSMAADPEMRAGFIGCFNFYCLVLSQLLYFLSK

Sequences:

>Translated_470_residues
MQPSDKQLDAQHQNSTAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVISQTGPIGAIIAYILGGAIAYMVMLCLGELAV
HMPVSGSFGAYARKYISPSTGYMISWMYWLTWTATLGTEFTAAALLMQEWFPQISMWIWTLIFAVTIFGLNISSTRVFAE
SEFWLALVKVITVIAFIVLGLLAIFGLIPFHGAQTAPLFSNLTAQGWFPHGFLPIFTTMLIVNFAFSGTELIGVAAGETK
DPAQNVPKAINAAIWRLLIFFVGTIIVISALLPFQLAGLGGDNVSNSPFVTVFNYIGIPYADDIIRFVIITALLSAANSG
LYAASRMMWSLSEQKLLPGVFATLSKSGTPIVALVVTMFGAIPGLLSEQFAPETIFKNLLGVAAFTMVIVWMSICLSQFN
FRRQWYRSGHTVSDLKYAAPLFPIVPILGFLFCFITCLSMAADPEMRAGFIGCFNFYCLVLSQLLYFLSK
>Mature_470_residues
MQPSDKQLDAQHQNSTAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVISQTGPIGAIIAYILGGAIAYMVMLCLGELAV
HMPVSGSFGAYARKYISPSTGYMISWMYWLTWTATLGTEFTAAALLMQEWFPQISMWIWTLIFAVTIFGLNISSTRVFAE
SEFWLALVKVITVIAFIVLGLLAIFGLIPFHGAQTAPLFSNLTAQGWFPHGFLPIFTTMLIVNFAFSGTELIGVAAGETK
DPAQNVPKAINAAIWRLLIFFVGTIIVISALLPFQLAGLGGDNVSNSPFVTVFNYIGIPYADDIIRFVIITALLSAANSG
LYAASRMMWSLSEQKLLPGVFATLSKSGTPIVALVVTMFGAIPGLLSEQFAPETIFKNLLGVAAFTMVIVWMSICLSQFN
FRRQWYRSGHTVSDLKYAAPLFPIVPILGFLFCFITCLSMAADPEMRAGFIGCFNFYCLVLSQLLYFLSK

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI4507047, Length=403, Percent_Identity=21.0918114143921, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI258614003, Length=387, Percent_Identity=21.1886304909561, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI258614005, Length=387, Percent_Identity=21.1886304909561, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI181337167, Length=359, Percent_Identity=23.3983286908078, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI258645169, Length=372, Percent_Identity=20.4301075268817, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87081708, Length=437, Percent_Identity=54.9199084668192, Blast_Score=509, Evalue=1e-145,
Organism=Escherichia coli, GI1788480, Length=442, Percent_Identity=40.9502262443439, Blast_Score=351, Evalue=6e-98,
Organism=Escherichia coli, GI1786789, Length=449, Percent_Identity=34.7438752783964, Blast_Score=275, Evalue=6e-75,
Organism=Escherichia coli, GI1786302, Length=437, Percent_Identity=36.1556064073227, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI48994972, Length=440, Percent_Identity=34.5454545454545, Blast_Score=258, Evalue=4e-70,
Organism=Escherichia coli, GI87081915, Length=434, Percent_Identity=35.2534562211982, Blast_Score=258, Evalue=8e-70,
Organism=Escherichia coli, GI1789017, Length=401, Percent_Identity=34.9127182044888, Blast_Score=254, Evalue=9e-69,
Organism=Escherichia coli, GI1786602, Length=434, Percent_Identity=36.405529953917, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1790653, Length=444, Percent_Identity=33.3333333333333, Blast_Score=238, Evalue=5e-64,
Organism=Escherichia coli, GI87081869, Length=413, Percent_Identity=23.0024213075061, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI2367353, Length=336, Percent_Identity=25, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17532491, Length=384, Percent_Identity=22.9166666666667, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17540018, Length=386, Percent_Identity=23.0569948186528, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324553, Length=420, Percent_Identity=32.8571428571429, Blast_Score=237, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6320772, Length=428, Percent_Identity=31.5420560747664, Blast_Score=232, Evalue=8e-62,
Organism=Saccharomyces cerevisiae, GI6324061, Length=433, Percent_Identity=30.0230946882217, Blast_Score=221, Evalue=2e-58,
Organism=Saccharomyces cerevisiae, GI6322892, Length=418, Percent_Identity=32.5358851674641, Blast_Score=207, Evalue=2e-54,
Organism=Saccharomyces cerevisiae, GI6319824, Length=432, Percent_Identity=28.4722222222222, Blast_Score=206, Evalue=8e-54,
Organism=Saccharomyces cerevisiae, GI6320717, Length=423, Percent_Identity=28.3687943262411, Blast_Score=204, Evalue=4e-53,
Organism=Saccharomyces cerevisiae, GI6319543, Length=425, Percent_Identity=29.1764705882353, Blast_Score=199, Evalue=9e-52,
Organism=Saccharomyces cerevisiae, GI6321053, Length=425, Percent_Identity=27.0588235294118, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6324059, Length=435, Percent_Identity=29.6551724137931, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6322967, Length=434, Percent_Identity=29.0322580645161, Blast_Score=192, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6324924, Length=425, Percent_Identity=28.2352941176471, Blast_Score=191, Evalue=2e-49,
Organism=Saccharomyces cerevisiae, GI6319542, Length=426, Percent_Identity=29.1079812206573, Blast_Score=189, Evalue=7e-49,
Organism=Saccharomyces cerevisiae, GI6321629, Length=422, Percent_Identity=27.9620853080569, Blast_Score=188, Evalue=2e-48,
Organism=Saccharomyces cerevisiae, GI6320251, Length=424, Percent_Identity=28.3018867924528, Blast_Score=186, Evalue=6e-48,
Organism=Saccharomyces cerevisiae, GI6324990, Length=448, Percent_Identity=27.6785714285714, Blast_Score=185, Evalue=1e-47,
Organism=Saccharomyces cerevisiae, GI6324981, Length=478, Percent_Identity=29.2887029288703, Blast_Score=179, Evalue=1e-45,
Organism=Saccharomyces cerevisiae, GI6319608, Length=429, Percent_Identity=24.009324009324, Blast_Score=148, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6320364, Length=489, Percent_Identity=24.3353783231084, Blast_Score=115, Evalue=1e-26,
Organism=Drosophila melanogaster, GI221331183, Length=366, Percent_Identity=22.1311475409836, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17647653, Length=366, Percent_Identity=22.1311475409836, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24664379, Length=366, Percent_Identity=22.1311475409836, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 51214; Mature: 51214

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPSDKQLDAQHQNSTAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVISQTGPIGAIIA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCEEECCCCHHHCCCCHHHHHH
YILGGAIAYMVMLCLGELAVHMPVSGSFGAYARKYISPSTGYMISWMYWLTWTATLGTEF
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHH
TAAALLMQEWFPQISMWIWTLIFAVTIFGLNISSTRVFAESEFWLALVKVITVIAFIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
LLAIFGLIPFHGAQTAPLFSNLTAQGWFPHGFLPIFTTMLIVNFAFSGTELIGVAAGETK
HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
DPAQNVPKAINAAIWRLLIFFVGTIIVISALLPFQLAGLGGDNVSNSPFVTVFNYIGIPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC
ADDIIRFVIITALLSAANSGLYAASRMMWSLSEQKLLPGVFATLSKSGTPIVALVVTMFG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AIPGLLSEQFAPETIFKNLLGVAAFTMVIVWMSICLSQFNFRRQWYRSGHTVSDLKYAAP
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LFPIVPILGFLFCFITCLSMAADPEMRAGFIGCFNFYCLVLSQLLYFLSK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQPSDKQLDAQHQNSTAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVISQTGPIGAIIA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCEEECCCCHHHCCCCHHHHHH
YILGGAIAYMVMLCLGELAVHMPVSGSFGAYARKYISPSTGYMISWMYWLTWTATLGTEF
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHH
TAAALLMQEWFPQISMWIWTLIFAVTIFGLNISSTRVFAESEFWLALVKVITVIAFIVLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
LLAIFGLIPFHGAQTAPLFSNLTAQGWFPHGFLPIFTTMLIVNFAFSGTELIGVAAGETK
HHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
DPAQNVPKAINAAIWRLLIFFVGTIIVISALLPFQLAGLGGDNVSNSPFVTVFNYIGIPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC
ADDIIRFVIITALLSAANSGLYAASRMMWSLSEQKLLPGVFATLSKSGTPIVALVVTMFG
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
AIPGLLSEQFAPETIFKNLLGVAAFTMVIVWMSICLSQFNFRRQWYRSGHTVSDLKYAAP
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LFPIVPILGFLFCFITCLSMAADPEMRAGFIGCFNFYCLVLSQLLYFLSK
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]