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The map label for this gene is yeaM [H]

Identifier: 213158792

GI number: 213158792

Start: 3600791

End: 3601585

Strand: Direct

Name: yeaM [H]

Synonym: AB57_3487

Alternate gene names: 213158792

Gene position: 3600791-3601585 (Clockwise)

Preceding gene: 213158790

Following gene: 213158795

Centisome position: 88.9

GC content: 39.87

Gene sequence:

>795_bases
ATGAAAAAATCAGCTCAACGTGTGCAGGATTTTCAGGAAATTCCGGCTCATAACGCAATTCCTGATTTGCTTTGGTTCCG
TGTTCGTAATGCACCCGCAGAAACGGTTTATCCTCAACATGCGCATGCATGGGGTGAGTTTATTTATGCGTTTAGTGGTG
TACTCGAAGTTAATATTGATCAAATTAATTATTTAACCCCGCCACCTTATGGTATTTGGCTTCCTCCTTATACCAAACAC
AGTGGTATTAACCGCAACGAAGTGACTCATGCAACTTTATATGTTCATGAAAGTCTGTGCCAAAAGTTACCGCAGAAAGC
CGGTATCCTATTAACGTCCCCACTTGTACCTGCTTTACTCGATCACTTGAGGCAAAACCCACAAGATGAAACCCAAGTCG
AATATATACGCCTACTCCAAGTTTTATTAGATCAACTCATACAGGCTGAATTAGTGGGTAGTTATTTACCTACAACAGAT
CATCCAGCTTTAGCAAAAATTCTAAATGATTTACATCAATGCCCTGCCGATAACAGCACCTTGCAAGAATTAGCTGAACG
AATAAATATGACTGAAAGAACATTGGCACGTTACAGTCAAAAAGAGCTGGGAATGTCTTTACATGAATGGAGGCAACGAT
TAAAAGTAATGAAAGCAATGACCATGCTTAATCAAGGAAAAACCATAGAAAGTATCGCTTTTGATTTGGGCTATGCCAGC
GCATCGGCATTTATTTATATGTTTAAACGTTGGATGGGTTTTACCCCAGACCAGTTCCGAAAGCTCTATCAATAA

Upstream 100 bases:

>100_bases
ACCTTTATTTATAGCGAAAAATCTGACTATAGAACTGTCTTATTTAGATGATATAGTGAAAAACAGACAATACATAAGCA
ATTTCAGGCAATTTTCAAAG

Downstream 100 bases:

>100_bases
ATTAATTTTGAGTATAATAAAAAAACCCTATTATCCGTTTAATAATAGGGTTTAAAGTTTAATAACTTAAATAAAATTAT
GCTTTAACAAAAGTTTCCCA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKKSAQRVQDFQEIPAHNAIPDLLWFRVRNAPAETVYPQHAHAWGEFIYAFSGVLEVNIDQINYLTPPPYGIWLPPYTKH
SGINRNEVTHATLYVHESLCQKLPQKAGILLTSPLVPALLDHLRQNPQDETQVEYIRLLQVLLDQLIQAELVGSYLPTTD
HPALAKILNDLHQCPADNSTLQELAERINMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYAS
ASAFIYMFKRWMGFTPDQFRKLYQ

Sequences:

>Translated_264_residues
MKKSAQRVQDFQEIPAHNAIPDLLWFRVRNAPAETVYPQHAHAWGEFIYAFSGVLEVNIDQINYLTPPPYGIWLPPYTKH
SGINRNEVTHATLYVHESLCQKLPQKAGILLTSPLVPALLDHLRQNPQDETQVEYIRLLQVLLDQLIQAELVGSYLPTTD
HPALAKILNDLHQCPADNSTLQELAERINMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYAS
ASAFIYMFKRWMGFTPDQFRKLYQ
>Mature_264_residues
MKKSAQRVQDFQEIPAHNAIPDLLWFRVRNAPAETVYPQHAHAWGEFIYAFSGVLEVNIDQINYLTPPPYGIWLPPYTKH
SGINRNEVTHATLYVHESLCQKLPQKAGILLTSPLVPALLDHLRQNPQDETQVEYIRLLQVLLDQLIQAELVGSYLPTTD
HPALAKILNDLHQCPADNSTLQELAERINMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYAS
ASAFIYMFKRWMGFTPDQFRKLYQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=236, Percent_Identity=31.3559322033898, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30416; Mature: 30416

Theoretical pI: Translated: 7.36; Mature: 7.36

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSAQRVQDFQEIPAHNAIPDLLWFRVRNAPAETVYPQHAHAWGEFIYAFSGVLEVNID
CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHEEEHH
QINYLTPPPYGIWLPPYTKHSGINRNEVTHATLYVHESLCQKLPQKAGILLTSPLVPALL
HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHH
DHLRQNPQDETQVEYIRLLQVLLDQLIQAELVGSYLPTTDHPALAKILNDLHQCPADNST
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHH
LQELAERINMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYAS
HHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ASAFIYMFKRWMGFTPDQFRKLYQ
HHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MKKSAQRVQDFQEIPAHNAIPDLLWFRVRNAPAETVYPQHAHAWGEFIYAFSGVLEVNID
CCCHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHEEEHH
QINYLTPPPYGIWLPPYTKHSGINRNEVTHATLYVHESLCQKLPQKAGILLTSPLVPALL
HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHH
DHLRQNPQDETQVEYIRLLQVLLDQLIQAELVGSYLPTTDHPALAKILNDLHQCPADNST
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHH
LQELAERINMTERTLARYSQKELGMSLHEWRQRLKVMKAMTMLNQGKTIESIAFDLGYAS
HHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ASAFIYMFKRWMGFTPDQFRKLYQ
HHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]