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The map label for this gene is rbn [C]

Identifier: 213158790

GI number: 213158790

Start: 3598503

End: 3599750

Strand: Direct

Name: rbn [C]

Synonym: AB57_3485

Alternate gene names: 213158790

Gene position: 3598503-3599750 (Clockwise)

Preceding gene: 213158788

Following gene: 213158792

Centisome position: 88.84

GC content: 36.38

Gene sequence:

>1248_bases
ATGTTAGAACGTTTTTTGAAGAAGCTTCCTTTTTATAACAAGACCTGGTTTCAATTTATTTTATTCGTAATTAAGCGTTT
TGAAGCGGATCGTTGCCGTGAACAAGCCGGCTCCCTCACCTATACGACTCTTTTTGCCGTTGTACCTATGTTAACGGTAT
TTTTAGTTATTATTTCTTCAATTAAGGCATTGGAACCTGCCAGACAACAGTTACAGCACTTAATCTACAGTAATTTTTTG
CCTAAAAGTACGATTGCTTTTGATAAAGCTCTTAATGCTTTTACCGAAAAGTCCAGTAATTTAACTGTAATTGGTGTGCT
ATTCCTCTTTGTCACAACAGTTTTAATGCTTACTTCAATTGAAACCGTTTTTAACCGAATATGGCGAGTAAAAGAAACCC
GTAGCGGTATTGTAGGCTTTATGCGTTACTGGACCATTATTTCGCTTGGTCCAATTATTTTAGGCAGTGCATTTGTTATT
TCATCAACTGTTGCTTCCATGAATTTATTGAGCAATAACTTCACAGGTTATCAACTTGATGGCGCATTTTTACTCTGGCT
TATTTCTTTTGTTCTCACAATTTTAGGTTTTTTTATTTTATATTGGACTATTCCCAACCGCACAGTTCCCCTATATGCAG
CAGCAATTGCTGCATGCTTAAGTGCTGCATTATTTGAGACACTCAAAAATTTATTTAGCTTTGTTATGTCAAATTTCACC
AGTTATGAAATCATATATGGTGCGTTTGCAGCAGTACCTATTTTCCTATTATGGGTCTTCTTATCTTGGAATATTGTATT
GCTTGGTGTCGAGGTAAGTTTTGCTCTTACCGCTTTTCATTCAGGCAAAGAGCAAAAAAGACATCCGGTTTTAATGCTGC
TCGATATCTTGGAATTGTTCTATAAAAAGCAAAAACTTGGTGAAAGCGTAAGTGATAAAGAAGCATTAGAAATTTTAGGT
CGTGGTGAAGTTGGTCGCTGGCCTGCTTATGTTCTCTTACTAGAAGAGCAAAATCTGGTTAAACGTACCGATAAGGATGA
ATATGTTTTGGTCCGCAATTTATCTCAAGTCGACTTTTGGAGCTTCTTCACTGCACTGCCTTATCCATTACCTTTACGTC
AGGATGTATCAAATGTGCATGATGATGACGAATGGATGGAAAAAATTGGCCCAGCTTTAGTAGAGTCTAATGATTATTTA
GCTGCAAAGCTCTCTATTCCACTTTCAACAATTTTTGAAGAGAAATAA

Upstream 100 bases:

>100_bases
GTTAAAGTTTACCCACATCAACGATAGTGTTCTCAACCGAATACACTGGTGAATATCAATCACCCACATCATGATTAAAA
AAATACGGGATAGATGACGC

Downstream 100 bases:

>100_bases
TACTCAACTAAAGTCAGGGCTTAGCTGCTGTTAGCTTTGCCCTGCTTTAGACTCATAATGACAATTCCTGACAACACTAA
AATACTTCCAAAAATAAATT

Product: putative ribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MLERFLKKLPFYNKTWFQFILFVIKRFEADRCREQAGSLTYTTLFAVVPMLTVFLVIISSIKALEPARQQLQHLIYSNFL
PKSTIAFDKALNAFTEKSSNLTVIGVLFLFVTTVLMLTSIETVFNRIWRVKETRSGIVGFMRYWTIISLGPIILGSAFVI
SSTVASMNLLSNNFTGYQLDGAFLLWLISFVLTILGFFILYWTIPNRTVPLYAAAIAACLSAALFETLKNLFSFVMSNFT
SYEIIYGAFAAVPIFLLWVFLSWNIVLLGVEVSFALTAFHSGKEQKRHPVLMLLDILELFYKKQKLGESVSDKEALEILG
RGEVGRWPAYVLLLEEQNLVKRTDKDEYVLVRNLSQVDFWSFFTALPYPLPLRQDVSNVHDDDEWMEKIGPALVESNDYL
AAKLSIPLSTIFEEK

Sequences:

>Translated_415_residues
MLERFLKKLPFYNKTWFQFILFVIKRFEADRCREQAGSLTYTTLFAVVPMLTVFLVIISSIKALEPARQQLQHLIYSNFL
PKSTIAFDKALNAFTEKSSNLTVIGVLFLFVTTVLMLTSIETVFNRIWRVKETRSGIVGFMRYWTIISLGPIILGSAFVI
SSTVASMNLLSNNFTGYQLDGAFLLWLISFVLTILGFFILYWTIPNRTVPLYAAAIAACLSAALFETLKNLFSFVMSNFT
SYEIIYGAFAAVPIFLLWVFLSWNIVLLGVEVSFALTAFHSGKEQKRHPVLMLLDILELFYKKQKLGESVSDKEALEILG
RGEVGRWPAYVLLLEEQNLVKRTDKDEYVLVRNLSQVDFWSFFTALPYPLPLRQDVSNVHDDDEWMEKIGPALVESNDYL
AAKLSIPLSTIFEEK
>Mature_415_residues
MLERFLKKLPFYNKTWFQFILFVIKRFEADRCREQAGSLTYTTLFAVVPMLTVFLVIISSIKALEPARQQLQHLIYSNFL
PKSTIAFDKALNAFTEKSSNLTVIGVLFLFVTTVLMLTSIETVFNRIWRVKETRSGIVGFMRYWTIISLGPIILGSAFVI
SSTVASMNLLSNNFTGYQLDGAFLLWLISFVLTILGFFILYWTIPNRTVPLYAAAIAACLSAALFETLKNLFSFVMSNFT
SYEIIYGAFAAVPIFLLWVFLSWNIVLLGVEVSFALTAFHSGKEQKRHPVLMLLDILELFYKKQKLGESVSDKEALEILG
RGEVGRWPAYVLLLEEQNLVKRTDKDEYVLVRNLSQVDFWSFFTALPYPLPLRQDVSNVHDDDEWMEKIGPALVESNDYL
AAKLSIPLSTIFEEK

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=264, Percent_Identity=32.5757575757576, Blast_Score=159, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 47425; Mature: 47425

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCHHHHHCCCCCHHHHHHHCHHHCCCCCCEEEEECCCHHHHHCCC
>Mature Secondary Structure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HHHHHCCCCCCCHHHHHCCCCCHHHHHHHCHHHCCCCCCEEEEECCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA