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The map label for this gene is yfdC [H]

Identifier: 213158746

GI number: 213158746

Start: 4005118

End: 4005957

Strand: Direct

Name: yfdC [H]

Synonym: AB57_3880

Alternate gene names: 213158746

Gene position: 4005118-4005957 (Clockwise)

Preceding gene: 213158745

Following gene: 213158750

Centisome position: 98.88

GC content: 42.98

Gene sequence:

>840_bases
ATGGACCATGAATTAGAAGAAGAGAAAGTCGATCAAACCCTAAGCTGGCGTGAAAAAATGGCAGTTGAAGAACACGAGAA
ACTGTCGCCCCGTTTAGTGTATGAAATTATCCGCCGTGATGGTGCCGAAGAGTTAGATCGCCCAACAGCCGCGCTCATCT
TTTCAGGCATTGCAGCAGGTCTAGTCATCAGTTTTTCATTTGTATTTAAAGCGATTATTGCTTCTTATATCCCAACTGAT
GCCATCTGGACCGATTTAATTACCAATTTCGGTTATACCATTGGATTCCTGATCGCTATTTTAGGACACATGCAGCTCTT
TACCGAAAATACCATTACTACAGTTGTGCCCCTATTTAAGCCCTTTACCTTAGACAAATTACGAGCTGTAGGCCGTCTAT
GGGGAATCGTGATTCTATGCAATATCATTGGAACAGGTTTGGCGAGTTTATTCTTCCTGACCACCGACCTGTTTACTCCA
AACATTGACAAAGCCCTAGATGAGCTCGCACATCATGTTGCGTCTTTTTCCGCCACCCAAAATCTGCTTAAAGGGGTTAT
GTCTGGACTTTTAATTGCTGCATTGGTCTGGATGCTACCTTCCGTCAGCAATAAATTCCTAGTCATCTTTTTCATGACTT
ATCTGATAGGACTAGGCGACTTTACCCATGTGGTCGTTGGCTCTACGGAAATGTCCTATCTGGTCTGGCAAGGAGAAGCT
TCTCTTGGTGAATATATGTTTAATTTCCTGATCCCAACCACCATTGGTAATATTATTGGTGGTACAGGCGTGTTTACCCT
GCTGATTTATGGTCAGGTGACTGAAGAATTGGAACAATAG

Upstream 100 bases:

>100_bases
TAAAGCTGGTAGGAATCTTCTAGATTTATCCTGAGCACTGCCTTAACAATAAATAAAAAACGATAAATATAAATTATTTA
TTCAGTGAGGAGTAAACCTG

Downstream 100 bases:

>100_bases
CAGGAAACAATAAAACTATTGTTCCTGCTGCCATCTGCGTTGTTGTAGGCGTTCACCTTCAACTTCACGCTTGTTTCTTG
CCGACTCATAGAGTTTGGTT

Product: formate/nitrite transporter family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MDHELEEEKVDQTLSWREKMAVEEHEKLSPRLVYEIIRRDGAEELDRPTAALIFSGIAAGLVISFSFVFKAIIASYIPTD
AIWTDLITNFGYTIGFLIAILGHMQLFTENTITTVVPLFKPFTLDKLRAVGRLWGIVILCNIIGTGLASLFFLTTDLFTP
NIDKALDELAHHVASFSATQNLLKGVMSGLLIAALVWMLPSVSNKFLVIFFMTYLIGLGDFTHVVVGSTEMSYLVWQGEA
SLGEYMFNFLIPTTIGNIIGGTGVFTLLIYGQVTEELEQ

Sequences:

>Translated_279_residues
MDHELEEEKVDQTLSWREKMAVEEHEKLSPRLVYEIIRRDGAEELDRPTAALIFSGIAAGLVISFSFVFKAIIASYIPTD
AIWTDLITNFGYTIGFLIAILGHMQLFTENTITTVVPLFKPFTLDKLRAVGRLWGIVILCNIIGTGLASLFFLTTDLFTP
NIDKALDELAHHVASFSATQNLLKGVMSGLLIAALVWMLPSVSNKFLVIFFMTYLIGLGDFTHVVVGSTEMSYLVWQGEA
SLGEYMFNFLIPTTIGNIIGGTGVFTLLIYGQVTEELEQ
>Mature_279_residues
MDHELEEEKVDQTLSWREKMAVEEHEKLSPRLVYEIIRRDGAEELDRPTAALIFSGIAAGLVISFSFVFKAIIASYIPTD
AIWTDLITNFGYTIGFLIAILGHMQLFTENTITTVVPLFKPFTLDKLRAVGRLWGIVILCNIIGTGLASLFFLTTDLFTP
NIDKALDELAHHVASFSATQNLLKGVMSGLLIAALVWMLPSVSNKFLVIFFMTYLIGLGDFTHVVVGSTEMSYLVWQGEA
SLGEYMFNFLIPTTIGNIIGGTGVFTLLIYGQVTEELEQ

Specific function: Unknown

COG id: COG2116

COG function: function code P; Formate/nitrite family of transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788689, Length=268, Percent_Identity=38.0597014925373, Blast_Score=181, Evalue=4e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000292 [H]

Pfam domain/function: PF01226 Form_Nir_trans [H]

EC number: NA

Molecular weight: Translated: 30999; Mature: 30999

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHELEEEKVDQTLSWREKMAVEEHEKLSPRLVYEIIRRDGAEELDRPTAALIFSGIAAG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHH
LVISFSFVFKAIIASYIPTDAIWTDLITNFGYTIGFLIAILGHMQLFTENTITTVVPLFK
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
PFTLDKLRAVGRLWGIVILCNIIGTGLASLFFLTTDLFTPNIDKALDELAHHVASFSATQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NLLKGVMSGLLIAALVWMLPSVSNKFLVIFFMTYLIGLGDFTHVVVGSTEMSYLVWQGEA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEECCCCCEEEEEECCH
SLGEYMFNFLIPTTIGNIIGGTGVFTLLIYGQVTEELEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDHELEEEKVDQTLSWREKMAVEEHEKLSPRLVYEIIRRDGAEELDRPTAALIFSGIAAG
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHH
LVISFSFVFKAIIASYIPTDAIWTDLITNFGYTIGFLIAILGHMQLFTENTITTVVPLFK
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
PFTLDKLRAVGRLWGIVILCNIIGTGLASLFFLTTDLFTPNIDKALDELAHHVASFSATQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
NLLKGVMSGLLIAALVWMLPSVSNKFLVIFFMTYLIGLGDFTHVVVGSTEMSYLVWQGEA
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHEECCCCCEEEEEECCH
SLGEYMFNFLIPTTIGNIIGGTGVFTLLIYGQVTEELEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]