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The map label for this gene is ydcR [H]

Identifier: 213158695

GI number: 213158695

Start: 2740601

End: 2742061

Strand: Direct

Name: ydcR [H]

Synonym: AB57_2651

Alternate gene names: 213158695

Gene position: 2740601-2742061 (Clockwise)

Preceding gene: 213158693

Following gene: 213158696

Centisome position: 67.66

GC content: 40.66

Gene sequence:

>1461_bases
ATGTACAAATATAAAAAAGTGAGTGATGACCTTACTCTTCAAATTCAGAATGGCAGGCAACCTGTGGGTTCTCGGTTGCC
ATCAATTCGAGACTGTGCCCAACATTATCAAGTTAGTATTAACACCGTAAAAGAAGCTTATCGGAAGCTTGAAGACCAAG
GTTTAATTTCTGTTCGTCCACAGTCTGGCTACTATGTTTGTCATGCACCTTCAAACTTGCCAGATCTTGAGGAGCGTTAT
ATCAGTGAAGAAAAAGTGCCCCTTTCAGGAATTAGCTGTTTTCTCGCGCAAATTGTTAAAAAGCAGATGGACCCCGACTA
TGTCAATTTGGCCCTAGCTTGCCCATCTGGTGAAAACTTCTACCCGATTGAACGCTTAAAACGTTTAACTGCTCAGGTTT
TACGAACACAGCCGGATATTTTTAAAAGCTATACTTTACCGCCCGGCTCTATACGTTTACGTACTCAAATTGCGAGGCGA
AGTTTACAGCTTGGTATGTTTCTATCCGCAGATAACATTGTGCTGACTCATGGCACTATGGAGGCTTTAAATCTTGCAAT
TATGGCAACCACCCAAGCAGGTGACAGCATAGCGCTTGAGATTCCTACTTTTCATAACTTATATCCACTTCTTCAGAATT
TAGGACGAAAAATTGTAGAAGTGCCGACTTCGCCGCATACAGGGATGTGTCTAGACGCACTTGAAGAACTCTTAAAATCT
CAAAGCGTACAAGCCATATTAACTATTCCAACAGGACATAATCCTCTTGGTTTTAGCATGCTTGAAAACAACCGACGTCG
TTTAGCCGAACTCGCTAATCAATTCCAAATTCCTGTTATTGAAGATGCGATGTATGCCGAATTACAACTCACCGAACCTC
TACTACCCAACATTAAGGCATTTGACCAAAATGGATGGGTTTTGGTTTGTGGCAGCTACACAAAAACTGTGGCACCCGAC
TATCGAATTGGTTGGCTAGAAGCTGGACGCTTCCGTAATATTGCCCAGCAGCTTAAATTTACAACCACTGTTGCCGAGCC
AGCTTTACTCACAGAAACGTTAGGACTTTTTTTAGAAAATGGTGGATATGATCTACATTTACGTCAGCTCAAAAAACGCT
ATCAACAACAAATTGACACCATCAAATCTTATATTTGCCGTTATTTTCCAGTCGGTACTCGAGTCAGTCGTCCACAAGCG
GGATTTATTTTATGGTTAGAGCTACCCGAATCAATTGATACCCTAGAACTGTTTCATCAGGCCATGGATGAAAAAATCTT
ATGTATGCCGGGAATTTTGTGCTCGGCTGATAAACGTTTTAGTCATTGTTTACGTATTGCAGCTTGTTTTGAGTTAAATC
CTAAAATGTTAAATGCTTTGATGCGTTTAGGAGAGTTAGCAAAAAATATGCTACCTGTACAAAAAGATATAGATCAAATC
CCTACTAATTCAGTAGGTTGA

Upstream 100 bases:

>100_bases
CCTCCATTAAAAGCATTAATCTAAATTAATCACAATGTTTGAGATAAATATGAGATCACTATAAAGTGTATCCATTGCTT
TTGCTTTTTAATAAATTGAT

Downstream 100 bases:

>100_bases
ATCGAAAATATAGAGTTAATAAAATAAAACCATATATTTTTTATGCCTTTTATTTTATGAAAACCGAACTTCTCTCTCCC
GCAGGTTCACTTAAAAACAT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MYKYKKVSDDLTLQIQNGRQPVGSRLPSIRDCAQHYQVSINTVKEAYRKLEDQGLISVRPQSGYYVCHAPSNLPDLEERY
ISEEKVPLSGISCFLAQIVKKQMDPDYVNLALACPSGENFYPIERLKRLTAQVLRTQPDIFKSYTLPPGSIRLRTQIARR
SLQLGMFLSADNIVLTHGTMEALNLAIMATTQAGDSIALEIPTFHNLYPLLQNLGRKIVEVPTSPHTGMCLDALEELLKS
QSVQAILTIPTGHNPLGFSMLENNRRRLAELANQFQIPVIEDAMYAELQLTEPLLPNIKAFDQNGWVLVCGSYTKTVAPD
YRIGWLEAGRFRNIAQQLKFTTTVAEPALLTETLGLFLENGGYDLHLRQLKKRYQQQIDTIKSYICRYFPVGTRVSRPQA
GFILWLELPESIDTLELFHQAMDEKILCMPGILCSADKRFSHCLRIAACFELNPKMLNALMRLGELAKNMLPVQKDIDQI
PTNSVG

Sequences:

>Translated_486_residues
MYKYKKVSDDLTLQIQNGRQPVGSRLPSIRDCAQHYQVSINTVKEAYRKLEDQGLISVRPQSGYYVCHAPSNLPDLEERY
ISEEKVPLSGISCFLAQIVKKQMDPDYVNLALACPSGENFYPIERLKRLTAQVLRTQPDIFKSYTLPPGSIRLRTQIARR
SLQLGMFLSADNIVLTHGTMEALNLAIMATTQAGDSIALEIPTFHNLYPLLQNLGRKIVEVPTSPHTGMCLDALEELLKS
QSVQAILTIPTGHNPLGFSMLENNRRRLAELANQFQIPVIEDAMYAELQLTEPLLPNIKAFDQNGWVLVCGSYTKTVAPD
YRIGWLEAGRFRNIAQQLKFTTTVAEPALLTETLGLFLENGGYDLHLRQLKKRYQQQIDTIKSYICRYFPVGTRVSRPQA
GFILWLELPESIDTLELFHQAMDEKILCMPGILCSADKRFSHCLRIAACFELNPKMLNALMRLGELAKNMLPVQKDIDQI
PTNSVG
>Mature_486_residues
MYKYKKVSDDLTLQIQNGRQPVGSRLPSIRDCAQHYQVSINTVKEAYRKLEDQGLISVRPQSGYYVCHAPSNLPDLEERY
ISEEKVPLSGISCFLAQIVKKQMDPDYVNLALACPSGENFYPIERLKRLTAQVLRTQPDIFKSYTLPPGSIRLRTQIARR
SLQLGMFLSADNIVLTHGTMEALNLAIMATTQAGDSIALEIPTFHNLYPLLQNLGRKIVEVPTSPHTGMCLDALEELLKS
QSVQAILTIPTGHNPLGFSMLENNRRRLAELANQFQIPVIEDAMYAELQLTEPLLPNIKAFDQNGWVLVCGSYTKTVAPD
YRIGWLEAGRFRNIAQQLKFTTTVAEPALLTETLGLFLENGGYDLHLRQLKKRYQQQIDTIKSYICRYFPVGTRVSRPQA
GFILWLELPESIDTLELFHQAMDEKILCMPGILCSADKRFSHCLRIAACFELNPKMLNALMRLGELAKNMLPVQKDIDQI
PTNSVG

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=317, Percent_Identity=23.3438485804416, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI33469970, Length=317, Percent_Identity=23.3438485804416, Blast_Score=86, Evalue=9e-17,
Organism=Escherichia coli, GI1787710, Length=472, Percent_Identity=33.6864406779661, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1790797, Length=468, Percent_Identity=32.0512820512821, Blast_Score=263, Evalue=2e-71,
Organism=Saccharomyces cerevisiae, GI6321000, Length=217, Percent_Identity=24.4239631336406, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21356535, Length=377, Percent_Identity=22.0159151193634, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54858; Mature: 54858

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKYKKVSDDLTLQIQNGRQPVGSRLPSIRDCAQHYQVSINTVKEAYRKLEDQGLISVRP
CCCCCCCCCCEEEEECCCCCCHHHCCCCHHHHHHHHEEHHHHHHHHHHHHCCCCCEEECC
QSGYYVCHAPSNLPDLEERYISEEKVPLSGISCFLAQIVKKQMDPDYVNLALACPSGENF
CCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
YPIERLKRLTAQVLRTQPDIFKSYTLPPGSIRLRTQIARRSLQLGMFLSADNIVLTHGTM
CHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEHHHHHHHHHHHHCEEEECCCEEEECCCH
EALNLAIMATTQAGDSIALEIPTFHNLYPLLQNLGRKIVEVPTSPHTGMCLDALEELLKS
HHHEEEEEEEECCCCEEEEECCCHHHHHHHHHHHCHHEEECCCCCCCCHHHHHHHHHHHC
QSVQAILTIPTGHNPLGFSMLENNRRRLAELANQFQIPVIEDAMYAELQLTEPLLPNIKA
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHEEECCCCCCCCEE
FDQNGWVLVCGSYTKTVAPDYRIGWLEAGRFRNIAQQLKFTTTVAEPALLTETLGLFLEN
ECCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GGYDLHLRQLKKRYQQQIDTIKSYICRYFPVGTRVSRPQAGFILWLELPESIDTLELFHQ
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
AMDEKILCMPGILCSADKRFSHCLRIAACFELNPKMLNALMRLGELAKNMLPVQKDIDQI
HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHC
PTNSVG
CCCCCC
>Mature Secondary Structure
MYKYKKVSDDLTLQIQNGRQPVGSRLPSIRDCAQHYQVSINTVKEAYRKLEDQGLISVRP
CCCCCCCCCCEEEEECCCCCCHHHCCCCHHHHHHHHEEHHHHHHHHHHHHCCCCCEEECC
QSGYYVCHAPSNLPDLEERYISEEKVPLSGISCFLAQIVKKQMDPDYVNLALACPSGENF
CCCEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
YPIERLKRLTAQVLRTQPDIFKSYTLPPGSIRLRTQIARRSLQLGMFLSADNIVLTHGTM
CHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEHHHHHHHHHHHHCEEEECCCEEEECCCH
EALNLAIMATTQAGDSIALEIPTFHNLYPLLQNLGRKIVEVPTSPHTGMCLDALEELLKS
HHHEEEEEEEECCCCEEEEECCCHHHHHHHHHHHCHHEEECCCCCCCCHHHHHHHHHHHC
QSVQAILTIPTGHNPLGFSMLENNRRRLAELANQFQIPVIEDAMYAELQLTEPLLPNIKA
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCHHHHHEEECCCCCCCCEE
FDQNGWVLVCGSYTKTVAPDYRIGWLEAGRFRNIAQQLKFTTTVAEPALLTETLGLFLEN
ECCCCCEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GGYDLHLRQLKKRYQQQIDTIKSYICRYFPVGTRVSRPQAGFILWLELPESIDTLELFHQ
CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH
AMDEKILCMPGILCSADKRFSHCLRIAACFELNPKMLNALMRLGELAKNMLPVQKDIDQI
HHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHC
PTNSVG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]