| Definition | Acinetobacter baumannii AB0057, complete genome. |
|---|---|
| Accession | NC_011586 |
| Length | 4,050,513 |
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The map label for this gene is caf1A [H]
Identifier: 213158612
GI number: 213158612
Start: 2658840
End: 2661338
Strand: Reverse
Name: caf1A [H]
Synonym: AB57_2566
Alternate gene names: 213158612
Gene position: 2661338-2658840 (Counterclockwise)
Preceding gene: 213158613
Following gene: 213158611
Centisome position: 65.7
GC content: 39.58
Gene sequence:
>2499_bases ATGATCCTTCGGCATAATAATTTATGCAAAAGTATTTTGCTGATTTTATTGTCGGGTGGATGTTTAAATATTCCAAATAC TGTGTTCGCAGGCGATTTGCCTCCACCACCAAGAGACATTAATGAAATTAATCAACTTTTTAAACTGTACCTCGATTTAA TTGTGAACCAGTATTCGGTCCAGCAAGTTGTGCCTGTTATTGTGAAAAATGATGAGTACTTCATACAAAAAGAGAAGCTG ATTGATGAATTAGAAATTAAGATCCCTCAAGATTTATTAACAAACACTGACACATCTTTATCTAATCAAGATGTTTTGAC ATTGGGGTTTAGTGGTGACGCGAGTGATTGGATATCTTTAGATAAATTAAAAGATGTAAGTTATGAATATCAATCTTCGA ATCAATACTTTAAGCTCAATTTTCCGCCAGCTTGGATGCCCACTCAAGTTTTGGGTAAAGACTCATGGTATAAGCCGGAA GTCGCTCAGTCTGGTATAGGGCTGCTCAATAACTATGATTTTTATACATATAGACCCTATCAAGGCGGTTCAACCAGTAG TTTATTTACTGAGCAGCGTTTTTTCTCTCCGTTAGGGGTCATTAAAAACTCTGGTGTCTATGTCAAAAACCAATACAAAA ATGAAGGTAACGCCGAGTCTGTAGATAATGACGGCTATCGTCGTTATGACACATCTTGGCAGTTTGATAACCAAAAGAAT GCTACATCTTTTTTACTGGGTGACATTATTACCGGTAGTAAAACGACGTGGGGAAGTTCTGTTCGACTAGGCGGTTTTCA GGTACAGAGAAACTATTCAACCCGACCAGATTTAATTACCTATCCATTGCCACAATTTATTGGGCAAGCTGCGTTGCCAA GTACAGTCGACTTAATTATTAATGGGCAAAAGACCAGCTCAACAGAAGTACAGTCTGGACCGTTTATTTTAAATAATGTT CCTTTTATTAACGGTAAAGGGGAAGCCGTTGTGGTTACGACTGATGCAGTCGGGCGTCAAGTCACAACATCGGTCCCATT TTATATTTCTAATACTTTGCTCAAGCCCGGCTTATTTGATTACTCATTGTCTTTAGGAAAAATTCGAGAAGACTACGGAC TTAAGAATTTTTCTTATGGAAAATTTGCAAGTACAGCCGATGCCCGTTATGGGGTAAATGACTGGCTGACTGTAGAAGGA CGCACCGAACTTTCTTCAGATTTACAGTTATTGGGTGCTGGGTCTGTACTCAAGCTTGCAAATTTAGGTGTGCTGAGTGC CTCTTTTACCCAAAGTAAAGCCGACAAATCTATGTCTGAAGATCGAACGAAAGACTTGGAAGGTAATCAATATACAGTTG GATACAGCTATAACCGTAATCGGTTTGGTTTTAGCATTAACCATAACCAACGTGATGATGAATATACCGACCTTTCACGG CTGCAATATAGCAATTTAATTTCAGTTAATAGCAATAAAAGCCTAACGGCCAATACTTATTTTGCCACTAAAAACTCAGG AACTTTTGGCATTGGTTATATCAATACCAAGGCGAATGACTTTAAAAATCGCTTCTTAAATTTGTCTTGGGCGCCTGTTT TACCGACTTATATGAATGGCGTGACTGTTTCATTAAGTGCCAACCGTGATTTCATCGAAAAAGAATGGAGTGCTGCATTT CAGCTTTCGATACCGTTGTTTCAGCGAAACGCGACTGTTAACTCAGGTTATGCGTTTAATAAGCAGGGCGATACTGGCTA CCTTAACTTCAACCGCTCTGTTCCGTCTGAAGGTGGTTTTGGTGTCGATTTAACCCGACGCTTTAATGAAAATAGTGAAG ATTTAAATCAGGCACGTGTCAATTACCGCAACAGTTATATTAATACTGACTTTGGACTGTCTGGAAACCATGACTATAAC TACTGGTTTGGCCTATCCGGTTCCCTGATTTATATGGCAGGAGATTTATTTGCCTCAAACCGATTAGGTGAGTCTTTTGC ATTGATCGATACAAACCAAGTGCCTGATGTTTTGGTCAGATACGAAAACAGTTTAATTGGCCGCAGTAATAAAAAAGGCC ATATTTTTGTGCCATCGGTCACGCCTTACTATTCGGGTAAATACAGCGTCGACCCAATCGACTTACCTTCAAACTTTACA ATCACACAAGTTGAACAACGGATAGCGGCTAAACGCGGTTCGGGCGTTGTGATTAAGTTCCCTGTTCATCAGTCTATTTC TGCCAATGTCTATTTGACTCAAGCAGATGGCAAACCTATGCCGGTAGGGTCTGTAGTACATAGAGCTGATCAAGAGTCTT CTTATGTGGGAATGGATGGCATTGTCTATTTAGAAAATTTAAAACCGAATAACACCGTAACGGTTCAGCGTTCGGATCAA AGTATTTGTAAAGCAGATTTTTCTGTAGATGTAGAACAAGCCAAGCAGCAGATTGTGGTGGTTAAACCTGTTACTTGTCA CGAGGTATCTTTGCCATGA
Upstream 100 bases:
>100_bases CAACGGCACATGAGTTGTCAAAAACATCTAAAATTTATGGTGTAGACAGTTCTGGTATTAAACAAGAATTGATCGAAATC ACCAAAATGGAGGATCCATC
Downstream 100 bases:
>100_bases ATATAAAAACAAAAAAATTACTCAGACATTTATGTATATTCTCTGGACTGATGTTGACAGGAAATATGGCTCATGCTGCA TGTAGCGTGAGCGCTTCAGG
Product: CsuD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 832; Mature: 832
Protein sequence:
>832_residues MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSVQQVVPVIVKNDEYFIQKEKL IDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISLDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPE VAQSGIGLLNNYDFYTYRPYQGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLIINGQKTSSTEVQSGPFILNNV PFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEG RTELSSDLQLLGAGSVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNGVTVSLSANRDFIEKEWSAAF QLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGFGVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYN YWFGLSGSLIYMAGDLFASNRLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDGIVYLENLKPNNTVTVQRSDQ SICKADFSVDVEQAKQQIVVVKPVTCHEVSLP
Sequences:
>Translated_832_residues MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSVQQVVPVIVKNDEYFIQKEKL IDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISLDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPE VAQSGIGLLNNYDFYTYRPYQGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLIINGQKTSSTEVQSGPFILNNV PFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEG RTELSSDLQLLGAGSVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNGVTVSLSANRDFIEKEWSAAF QLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGFGVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYN YWFGLSGSLIYMAGDLFASNRLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDGIVYLENLKPNNTVTVQRSDQ SICKADFSVDVEQAKQQIVVVKPVTCHEVSLP >Mature_832_residues MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSVQQVVPVIVKNDEYFIQKEKL IDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISLDKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPE VAQSGIGLLNNYDFYTYRPYQGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLIINGQKTSSTEVQSGPFILNNV PFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFDYSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEG RTELSSDLQLLGAGSVLKLANLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNGVTVSLSANRDFIEKEWSAAF QLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGFGVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYN YWFGLSGSLIYMAGDLFASNRLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDGIVYLENLKPNNTVTVQRSDQ SICKADFSVDVEQAKQQIVVVKPVTCHEVSLP
Specific function: A probable role in capsular biogenesis. It is likely that the caf1A molecule binds F1 antigen subunits during the extracellular secretion process [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789533, Length=676, Percent_Identity=23.3727810650888, Blast_Score=95, Evalue=1e-20, Organism=Escherichia coli, GI1790772, Length=767, Percent_Identity=22.2946544980443, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1787172, Length=642, Percent_Identity=21.8068535825545, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1789610, Length=534, Percent_Identity=22.8464419475655, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1786332, Length=653, Percent_Identity=21.4395099540582, Blast_Score=67, Evalue=6e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 92792; Mature: 92792
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01151 FIMBRIAL_USHER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSV CEEECCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCHHHH QQVVPVIVKNDEYFIQKEKLIDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISL HHEEEEEECCCCCEEEHHHHHHHHHEECCHHHHCCCCCCCCCCCEEEEEECCCCCCCEEH DKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGIGLLNNYDFYTYRPY HHHHCCCEEECCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHCCCCHHCCCCCEEECCC QGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN CCCCCHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLII CHHEEEEHEECCCCCCCCCEEEECCEEEECCCCCCCCEEEECCHHHHCCCCCCCEEEEEE NGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFD ECCCCCCCCCCCCCEEECCCCEECCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCCCE YSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEGRTELSSDLQLLGAGSVLKLA EECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEHH NLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR CCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHH LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNG HHHCCEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHEECCEECCCCHHHHCC VTVSLSANRDFIEKEWSAAFQLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGF EEEEEECCCCHHHHHCCCEEEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCC GVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYNYWFGLSGSLIYMAGDLFASN CEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCEEEEECCHHHCC RLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT CCCCEEEEEECCCCCHHHHEECCHHCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCC ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDG HHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEECCCC IVYLENLKPNNTVTVQRSDQSICKADFSVDVEQAKQQIVVVKPVTCHEVSLP EEEEECCCCCCEEEEEECCCCHHHHCCCCCHHHCCCEEEEECCCEEECCCCC >Mature Secondary Structure MILRHNNLCKSILLILLSGGCLNIPNTVFAGDLPPPPRDINEINQLFKLYLDLIVNQYSV CEEECCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCHHHH QQVVPVIVKNDEYFIQKEKLIDELEIKIPQDLLTNTDTSLSNQDVLTLGFSGDASDWISL HHEEEEEECCCCCEEEHHHHHHHHHEECCHHHHCCCCCCCCCCCEEEEEECCCCCCCEEH DKLKDVSYEYQSSNQYFKLNFPPAWMPTQVLGKDSWYKPEVAQSGIGLLNNYDFYTYRPY HHHHCCCEEECCCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHCCCCHHCCCCCEEECCC QGGSTSSLFTEQRFFSPLGVIKNSGVYVKNQYKNEGNAESVDNDGYRRYDTSWQFDNQKN CCCCCHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCC ATSFLLGDIITGSKTTWGSSVRLGGFQVQRNYSTRPDLITYPLPQFIGQAALPSTVDLII CHHEEEEHEECCCCCCCCCEEEECCEEEECCCCCCCCEEEECCHHHHCCCCCCCEEEEEE NGQKTSSTEVQSGPFILNNVPFINGKGEAVVVTTDAVGRQVTTSVPFYISNTLLKPGLFD ECCCCCCCCCCCCCEEECCCCEECCCCCEEEEEECCCCCEEEECCCCEEECCCCCCCCCE YSLSLGKIREDYGLKNFSYGKFASTADARYGVNDWLTVEGRTELSSDLQLLGAGSVLKLA EECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCEEEHH NLGVLSASFTQSKADKSMSEDRTKDLEGNQYTVGYSYNRNRFGFSINHNQRDDEYTDLSR CCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHH LQYSNLISVNSNKSLTANTYFATKNSGTFGIGYINTKANDFKNRFLNLSWAPVLPTYMNG HHHCCEEEECCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHEECCEECCCCHHHHCC VTVSLSANRDFIEKEWSAAFQLSIPLFQRNATVNSGYAFNKQGDTGYLNFNRSVPSEGGF EEEEEECCCCHHHHHCCCEEEEEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCCCCCC GVDLTRRFNENSEDLNQARVNYRNSYINTDFGLSGNHDYNYWFGLSGSLIYMAGDLFASN CEEEEECCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCEEEEECCCCEEEEECCHHHCC RLGESFALIDTNQVPDVLVRYENSLIGRSNKKGHIFVPSVTPYYSGKYSVDPIDLPSNFT CCCCEEEEEECCCCCHHHHEECCHHCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCCC ITQVEQRIAAKRGSGVVIKFPVHQSISANVYLTQADGKPMPVGSVVHRADQESSYVGMDG HHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCEECCCC IVYLENLKPNNTVTVQRSDQSICKADFSVDVEQAKQQIVVVKPVTCHEVSLP EEEEECCCCCCEEEEEECCCCHHHHCCCCCHHHCCCEEEEECCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1551441; 9826348; 9748454; 11586360 [H]