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The map label for this gene is yahB [H]

Identifier: 213158436

GI number: 213158436

Start: 2472731

End: 2473597

Strand: Direct

Name: yahB [H]

Synonym: AB57_2385

Alternate gene names: 213158436

Gene position: 2472731-2473597 (Clockwise)

Preceding gene: 213158434

Following gene: 213158437

Centisome position: 61.05

GC content: 41.06

Gene sequence:

>867_bases
ATGTTCCAAGCCGTTATGGAAACAGGTTCATTTTCAGCAGCAGCAAGGAAACTCGGTAAAGTCCCCTCTGCTGTGAGTAT
GTCGATTGCTAATTTAGAAATTGATCTGAACCTGACTTTATTTGAACGTAAAGGCCGCGAACCTACTCCTACAGCCGAAG
CACGAGTGCTATATGAAAAAACGGCGCAACTATTGATTGAAATGAATCAATGGAAACAGCACGCGCATGCATTAAGTACT
GGGCTGGAACCTAATCTTACTATTGTTGTGGTGTCTGAGCTGCTACATACCAATTGGACCGACTATGTTTGCCTGCTAGA
AAGTCGCTTTCCCGATCTACAAATTAATATTGTGTCTGCCCCTCAAGAAGATGCGCTTCAAATGTTATTAGATGGATCTG
CCCAACTGGCCCTTATGTTTGAACGTGAGCATTTAGACAATAGAGAACAGTTTGTTGAACTCAAACGTGAAGCCTTAATT
CCGGTTATTTCAAAAACCCATCCGCTTGCAAGCCAAGAGCATGTTTCATATGAGCAGATTTTAGGTACTAGACAAATTGT
GGTGGCAAGTCGAGATGAAACATTAAAACCCGAATTATTATTTTCAAAACATTACTGGCGTACAGATAACCACCACTCTG
CTTGCTTAATGATTTTACGTAATTTAGGTTGGGGCGTACTTCCACAAGAGATGTTTAAAGAAAATCCTGAGTTAAACAAC
AAGCTTAAAGCATTAGATGTATTTGATTTTACGCCTCGATTTGAATATTACGTTGATTTGGTCTGGAGCCGCGAAAGTGA
ACTCGGTGCTGCTGCACGGTTTTTGATTGACTATATTCGTAATAAGCGAATGCAACCGGCTCCGTAA

Upstream 100 bases:

>100_bases
TAACTTGGATAATGTGCATTTTATTTTTATAATTTTGATTAATCCAATCAGGTTCTTTCAATTTTTTTGACAGATGAATA
TTAATCAAGAACAACTACTC

Downstream 100 bases:

>100_bases
AATCATTTCAATTTAGATGCAGAACCTAAACGTTTTTCTTTGAAACATAACAATTGATATATCGACAGTATGGATAGAGT
TTGTGCTATAAAGAAAACAT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MFQAVMETGSFSAAARKLGKVPSAVSMSIANLEIDLNLTLFERKGREPTPTAEARVLYEKTAQLLIEMNQWKQHAHALST
GLEPNLTIVVVSELLHTNWTDYVCLLESRFPDLQINIVSAPQEDALQMLLDGSAQLALMFEREHLDNREQFVELKREALI
PVISKTHPLASQEHVSYEQILGTRQIVVASRDETLKPELLFSKHYWRTDNHHSACLMILRNLGWGVLPQEMFKENPELNN
KLKALDVFDFTPRFEYYVDLVWSRESELGAAARFLIDYIRNKRMQPAP

Sequences:

>Translated_288_residues
MFQAVMETGSFSAAARKLGKVPSAVSMSIANLEIDLNLTLFERKGREPTPTAEARVLYEKTAQLLIEMNQWKQHAHALST
GLEPNLTIVVVSELLHTNWTDYVCLLESRFPDLQINIVSAPQEDALQMLLDGSAQLALMFEREHLDNREQFVELKREALI
PVISKTHPLASQEHVSYEQILGTRQIVVASRDETLKPELLFSKHYWRTDNHHSACLMILRNLGWGVLPQEMFKENPELNN
KLKALDVFDFTPRFEYYVDLVWSRESELGAAARFLIDYIRNKRMQPAP
>Mature_288_residues
MFQAVMETGSFSAAARKLGKVPSAVSMSIANLEIDLNLTLFERKGREPTPTAEARVLYEKTAQLLIEMNQWKQHAHALST
GLEPNLTIVVVSELLHTNWTDYVCLLESRFPDLQINIVSAPQEDALQMLLDGSAQLALMFEREHLDNREQFVELKREALI
PVISKTHPLASQEHVSYEQILGTRQIVVASRDETLKPELLFSKHYWRTDNHHSACLMILRNLGWGVLPQEMFKENPELNN
KLKALDVFDFTPRFEYYVDLVWSRESELGAAARFLIDYIRNKRMQPAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=240, Percent_Identity=25.4166666666667, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787949, Length=292, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789492, Length=89, Percent_Identity=40.4494382022472, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33046; Mature: 33046

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQAVMETGSFSAAARKLGKVPSAVSMSIANLEIDLNLTLFERKGREPTPTAEARVLYEK
CCHHHHHCCCHHHHHHHHCCCCCHHEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHH
TAQLLIEMNQWKQHAHALSTGLEPNLTIVVVSELLHTNWTDYVCLLESRFPDLQINIVSA
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHEEEEECCCCCEEEEEECC
PQEDALQMLLDGSAQLALMFEREHLDNREQFVELKREALIPVISKTHPLASQEHVSYEQI
CHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
LGTRQIVVASRDETLKPELLFSKHYWRTDNHHSACLMILRNLGWGVLPQEMFKENPELNN
HCCEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
KLKALDVFDFTPRFEYYVDLVWSRESELGAAARFLIDYIRNKRMQPAP
CEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFQAVMETGSFSAAARKLGKVPSAVSMSIANLEIDLNLTLFERKGREPTPTAEARVLYEK
CCHHHHHCCCHHHHHHHHCCCCCHHEEEEEEEEEEEEEEEEECCCCCCCCCHHHHHHHHH
TAQLLIEMNQWKQHAHALSTGLEPNLTIVVVSELLHTNWTDYVCLLESRFPDLQINIVSA
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHCCCCHHEEEEECCCCCEEEEEECC
PQEDALQMLLDGSAQLALMFEREHLDNREQFVELKREALIPVISKTHPLASQEHVSYEQI
CHHHHHHHHHCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
LGTRQIVVASRDETLKPELLFSKHYWRTDNHHSACLMILRNLGWGVLPQEMFKENPELNN
HCCEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
KLKALDVFDFTPRFEYYVDLVWSRESELGAAARFLIDYIRNKRMQPAP
CEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]