Click here to switch to the map view.

The map label for this gene is xerC [H]

Identifier: 213158313

GI number: 213158313

Start: 3135298

End: 3136212

Strand: Reverse

Name: xerC [H]

Synonym: AB57_3040

Alternate gene names: 213158313

Gene position: 3136212-3135298 (Counterclockwise)

Preceding gene: 213158315

Following gene: 213158312

Centisome position: 77.43

GC content: 38.03

Gene sequence:

>915_bases
TTGGATTTTGCATTACAACTGCTCTCAATGTGGTTAAAAGAAAGAAAAATTCAAAACCAGTCTGAGCATACAATTACCGC
TTATGAGCGAGATGTTAGAAGCTTCCTTGAGTTTTGTGAGCTTAAAAAAGTTGATTTAAGAAATGTTGAAGCTTCAGATT
TACGTGAATATTTGGCTCAACGTGTTGAGCAAGATCAGTTAAGCTCAAGTAGCATGCAACGTCATCTTACTTCTATTCGT
CAGTTTATGAAGTGGGCTGAACAGGGCAAATACCTAGAAATTAATCCTACTGACGATTTTAAATTGAAACGTCAGCCTAG
ACCTTTACCGGGCATGATTGACATAGAAACGGTTAATCAAATTTTAGATCAACCCATGCCTGAAAAACCAATTGATCAGC
AGCTTTGGTTAAGAGATAAAGCCATGTTAGAACTACTGTACTCAAGTGGTTTACGGCTCGCTGAACTGCAAGGCTTAACG
ATTAAAGATATTGATTTTAATCGTCAACTCGTTCGCATTACAGGTAAAGGTAATAAAACCCGTATTGTACCGTTTGGGAA
AAAGGCAAAAGAAAGCTTATTGAATTGGCTAAAAATTTATAATATCTGGAAAGGCCATTTTGACCAAAATGCTTCCGTTT
TCATTTCACAGCGAGGCGGTGCATTAACTCCTAGGCAAATTGAAAAGCGTGTAAAACTTCAGGCACAAAGAGCGGGTGTA
AATGTCGACTTACACCCACATTTACTTCGACATTGTTTTGCTAGCCATATGTTATCAAGTAGTGGAGATTTACGTTCAGT
TCAAGAAATGTTAGGGCATAGCAATTTATCGACTACCCAAATTTATACACATATTGATTTTGATCATTTGGCCCAAGTGT
ACGATCAGGCCCATCCACGAGCCACCAAGCATTAA

Upstream 100 bases:

>100_bases
AATATATAAGTTGGATTCATTATGCTGTGCGATATCAAATTTTCCTGATTAAATAGTTTTTGGTACACTCAAAAAAGTGG
GCAAATAAATGGAGAGCAAT

Downstream 100 bases:

>100_bases
GCCGCTTTAGCTGGGTTAAAAAAGCAGAATGTAGAGATCATTTGTATTTTTTTACAAATTTGTTTAAAAGAAATCGATGA
AATTACCCAATTGACCATTT

Product: tyrosine recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDFALQLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSSSMQRHLTSIR
QFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLT
IKDIDFNRQLVRITGKGNKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGV
NVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATKH

Sequences:

>Translated_304_residues
MDFALQLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSSSMQRHLTSIR
QFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLT
IKDIDFNRQLVRITGKGNKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGV
NVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATKH
>Mature_304_residues
MDFALQLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSSSMQRHLTSIR
QFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLT
IKDIDFNRQLVRITGKGNKTRIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGV
NVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATKH

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=281, Percent_Identity=39.5017793594306, Blast_Score=209, Evalue=1e-55,
Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=39.1156462585034, Blast_Score=199, Evalue=1e-52,
Organism=Escherichia coli, GI1790768, Length=174, Percent_Identity=28.735632183908, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790767, Length=165, Percent_Identity=29.0909090909091, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35427; Mature: 35427

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFALQLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQ
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
RVEQDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCEEEHHHHHH
ILDQPMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKT
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHCCCEEEECCCCCEEEEEECCCCCE
RIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGV
EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
NVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPR
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCC
ATKH
CCCC
>Mature Secondary Structure
MDFALQLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQ
CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHH
RVEQDQLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCEECCCCCCCCCEEEHHHHHH
ILDQPMPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKT
HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHCCCEEEECCCCCEEEEEECCCCCE
RIVPFGKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGV
EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCC
NVDLHPHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPR
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCC
ATKH
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA