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The map label for this gene is ygeR [C]

Identifier: 213158145

GI number: 213158145

Start: 2948072

End: 2948902

Strand: Reverse

Name: ygeR [C]

Synonym: AB57_2859

Alternate gene names: 213158145

Gene position: 2948902-2948072 (Counterclockwise)

Preceding gene: 213158146

Following gene: 213158144

Centisome position: 72.8

GC content: 42.12

Gene sequence:

>831_bases
ATGCATTTAACTGGGCAACAAAGCAGATTGCATATTCAAAGAGACAAAATAATGAAAATTATGATGTTGTCTGTAGCTGT
AGGTTTTACTGTTGCAATGGCAGGATGTGCTTCTAAACCACAAATTAATAATAGTTCTCGCTATGCAATGGCTCCTAACT
ATTACACAGTCCGTTCAGGTGATACTTTAAGTGGTATTGCAATGCGTTATGGTCTGGACTATCTCAGTATTGCAGAGATG
AATGGTATTGCACCGCCATATCGTATTTATGTTAATCAATCATTACGATTGAAGAAATCTTCTTCACCAAGAACTGTGTC
GACACAAGTCATGGCGCAACCGGAACCAATTAAGCGTCAAACAATTGCTTTACCGACAACTACTGCACCAACCACAACCA
CTCCACCGCCAGCAACTGTTGCGCCATCAACCAATACAACAGTGGGAGCATCTATTCCAAGCTCAAGCTTACGTTGGGTG
AAACCAAATAACGGTCCGGTTATTCAAGGCTTTAATTTGGCGAATAATGTCAAAGGAATCCGTTACGGTGGTAACCAAGG
TGACCCGATTTATGCGGCGGCTGATGGTCAAGTTGTATACGCAGCCGATGGTCTGAAAGAATATGGTAACTTAGTTTTAA
TTAAACATATTGATGGTTACATCAGTGCGTATGCCCACAATAGCAAGATGATGGTCAAGAGTGGTGACAATGTAACCGCA
GGCCAAAAGATTGCTGAAATGGGGTCTTCAGGGGCATCTCGCGTTATGCTTGAGTTCCAAATTCGCCTTGACGGTAAACC
GATCAACCCTGCAAATCTTTTACCAAATTAG

Upstream 100 bases:

>100_bases
TGTTATAACTTTGTGAATAAAGAAAAAGAGGAACATGTTTCCTCTTACTTTTTTGGTACTCTTAGCCGAAATGATTTGTA
GCATTTAGTGAGGGAGATCG

Downstream 100 bases:

>100_bases
CTAATGCATTAAATATAGGTTTCCTCGTATAATACAATTGGTTGCTTTCATTACAACAATAAGCATTTTTTATAAATTTA
GAATTAGATTTGAGGAAACC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MHLTGQQSRLHIQRDKIMKIMMLSVAVGFTVAMAGCASKPQINNSSRYAMAPNYYTVRSGDTLSGIAMRYGLDYLSIAEM
NGIAPPYRIYVNQSLRLKKSSSPRTVSTQVMAQPEPIKRQTIALPTTTAPTTTTPPPATVAPSTNTTVGASIPSSSLRWV
KPNNGPVIQGFNLANNVKGIRYGGNQGDPIYAAADGQVVYAADGLKEYGNLVLIKHIDGYISAYAHNSKMMVKSGDNVTA
GQKIAEMGSSGASRVMLEFQIRLDGKPINPANLLPN

Sequences:

>Translated_276_residues
MHLTGQQSRLHIQRDKIMKIMMLSVAVGFTVAMAGCASKPQINNSSRYAMAPNYYTVRSGDTLSGIAMRYGLDYLSIAEM
NGIAPPYRIYVNQSLRLKKSSSPRTVSTQVMAQPEPIKRQTIALPTTTAPTTTTPPPATVAPSTNTTVGASIPSSSLRWV
KPNNGPVIQGFNLANNVKGIRYGGNQGDPIYAAADGQVVYAADGLKEYGNLVLIKHIDGYISAYAHNSKMMVKSGDNVTA
GQKIAEMGSSGASRVMLEFQIRLDGKPINPANLLPN
>Mature_276_residues
MHLTGQQSRLHIQRDKIMKIMMLSVAVGFTVAMAGCASKPQINNSSRYAMAPNYYTVRSGDTLSGIAMRYGLDYLSIAEM
NGIAPPYRIYVNQSLRLKKSSSPRTVSTQVMAQPEPIKRQTIALPTTTAPTTTTPPPATVAPSTNTTVGASIPSSSLRWV
KPNNGPVIQGFNLANNVKGIRYGGNQGDPIYAAADGQVVYAADGLKEYGNLVLIKHIDGYISAYAHNSKMMVKSGDNVTA
GQKIAEMGSSGASRVMLEFQIRLDGKPINPANLLPN

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87082174, Length=257, Percent_Identity=38.1322957198444, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789099, Length=255, Percent_Identity=33.7254901960784, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI87082297, Length=148, Percent_Identity=35.8108108108108, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 29619; Mature: 29619

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLTGQQSRLHIQRDKIMKIMMLSVAVGFTVAMAGCASKPQINNSSRYAMAPNYYTVRSG
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECC
DTLSGIAMRYGLDYLSIAEMNGIAPPYRIYVNQSLRLKKSSSPRTVSTQVMAQPEPIKRQ
CCHHHHHHHHCCCCEEEEHHCCCCCCEEEEECCCEEEECCCCCCEEEEEEEECCCCCCCE
TIALPTTTAPTTTTPPPATVAPSTNTTVGASIPSSSLRWVKPNNGPVIQGFNLANNVKGI
EEEECCCCCCCCCCCCCCEECCCCCCEEECCCCCCCEEEECCCCCCEEECCCCCCCCCEE
RYGGNQGDPIYAAADGQVVYAADGLKEYGNLVLIKHIDGYISAYAHNSKMMVKSGDNVTA
EECCCCCCEEEEECCCCEEEEECCHHHHCCEEEEEECCCEEEEEECCCEEEEECCCCCCH
GQKIAEMGSSGASRVMLEFQIRLDGKPINPANLLPN
HHHHHHHCCCCCCEEEEEEEEEECCCCCCHHCCCCC
>Mature Secondary Structure
MHLTGQQSRLHIQRDKIMKIMMLSVAVGFTVAMAGCASKPQINNSSRYAMAPNYYTVRSG
CCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECC
DTLSGIAMRYGLDYLSIAEMNGIAPPYRIYVNQSLRLKKSSSPRTVSTQVMAQPEPIKRQ
CCHHHHHHHHCCCCEEEEHHCCCCCCEEEEECCCEEEECCCCCCEEEEEEEECCCCCCCE
TIALPTTTAPTTTTPPPATVAPSTNTTVGASIPSSSLRWVKPNNGPVIQGFNLANNVKGI
EEEECCCCCCCCCCCCCCEECCCCCCEEECCCCCCCEEEECCCCCCEEECCCCCCCCCEE
RYGGNQGDPIYAAADGQVVYAADGLKEYGNLVLIKHIDGYISAYAHNSKMMVKSGDNVTA
EECCCCCCEEEEECCCCEEEEECCHHHHCCEEEEEECCCEEEEEECCCEEEEECCCCCCH
GQKIAEMGSSGASRVMLEFQIRLDGKPINPANLLPN
HHHHHHHCCCCCCEEEEEEEEEECCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]