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The map label for this gene is rdgA [H]

Identifier: 213158017

GI number: 213158017

Start: 2801851

End: 2802597

Strand: Direct

Name: rdgA [H]

Synonym: AB57_2728

Alternate gene names: 213158017

Gene position: 2801851-2802597 (Clockwise)

Preceding gene: 213158726

Following gene: 213158018

Centisome position: 69.17

GC content: 40.43

Gene sequence:

>747_bases
ATGAAAGTTATGAGCACAATGGTTGAGCGCATTCAGGAAGCACTGAAAGCAAAGAAATTATCATGGTCTAAAGCTGCCAC
AATGATTGGCCTGACTCCTCAAGCGCCTTCTAAATGGAAAAAAGGACAGATTGGCAAAGAGACTTTGGATAAGTTGGCCG
AACTTTTAGAAGTTGATGCCGGATGGCTTCTAAACGGGAAGAAAAAACAAAATTTAACCAACTTCAACATGCAAGAATTT
ATGGATAAGCACGGTCTATCCAAGAAAGATGAATCATCATTTGATGTGAATGATATTCAAAGCCCGTCAGTAGTTGAGTA
TGGTGGGGATGATGGATTTATCTGGATTGATGTGGTAGAGGCAAGTTTTTCTTGTGGCACAGGAGAGTCTATAGAGTTTC
ACTTTGATGTGATCAATGGAAAACAGCCATTCCCACCTAGTTTTTTTAAACAAAAAAATGTTCATCCTGATTGCATGCGC
ATCATCAAGGCTAAAGGCGACAGCATGGCGGACAAGATTGATGATGGGGATTTGGTTGGCATTGATATATCCCAAACCGA
CATTATCGATGGTCAAATTTATGCTGTTTACTTTGAGGGTGAAGGCATGATTAAGCAGATTTTCAAGGAAGAAGGCGGGA
AACTGATTCTGCACAGCCTAAATCCTAAATACAGAGATCGTGAAGTCACGGAGCAAAATGGATTGAATTTTAAAGTTATG
GGTCGCCAATTTTGGCGTGCAGGTTAA

Upstream 100 bases:

>100_bases
ATTAATATTTTTATTAAACCATGAGTTAAAATTATTTTCAACCTATGGTTGCTTACAATTTTATATTTTTATACGAAAAT
TTAACCAAAGGTTTCACGCG

Downstream 100 bases:

>100_bases
AAAAGGAGAATGGAATTGGATAACGCAAAACTACCAATCAATCAGATTATTGCTCGCATCAATGATGCTGCGAAACATGG
TGAAGCTTTGGTGCTAACAG

Product: peptidase S24 S26A and S26B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MKVMSTMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEVDAGWLLNGKKKQNLTNFNMQEF
MDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVEASFSCGTGESIEFHFDVINGKQPFPPSFFKQKNVHPDCMR
IIKAKGDSMADKIDDGDLVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVM
GRQFWRAG

Sequences:

>Translated_248_residues
MKVMSTMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEVDAGWLLNGKKKQNLTNFNMQEF
MDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVEASFSCGTGESIEFHFDVINGKQPFPPSFFKQKNVHPDCMR
IIKAKGDSMADKIDDGDLVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVM
GRQFWRAG
>Mature_248_residues
MKVMSTMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEVDAGWLLNGKKKQNLTNFNMQEF
MDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVEASFSCGTGESIEFHFDVINGKQPFPPSFFKQKNVHPDCMR
IIKAKGDSMADKIDDGDLVGIDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVM
GRQFWRAG

Specific function: Regulates pectin lyase production in response to DNA damage [H]

COG id: COG2932

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 27923; Mature: 27923

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVMSTMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEVDA
CCHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
GWLLNGKKKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVE
CEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEE
ASFSCGTGESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGDLVG
CCCCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCEEE
IDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVM
EECCCCEEECCEEEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEE
GRQFWRAG
CHHHHCCC
>Mature Secondary Structure
MKVMSTMVERIQEALKAKKLSWSKAATMIGLTPQAPSKWKKGQIGKETLDKLAELLEVDA
CCHHHHHHHHHHHHHHHHHCCHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
GWLLNGKKKQNLTNFNMQEFMDKHGLSKKDESSFDVNDIQSPSVVEYGGDDGFIWIDVVE
CEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEE
ASFSCGTGESIEFHFDVINGKQPFPPSFFKQKNVHPDCMRIIKAKGDSMADKIDDGDLVG
CCCCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHCCCHHHHCCCCCCEEE
IDISQTDIIDGQIYAVYFEGEGMIKQIFKEEGGKLILHSLNPKYRDREVTEQNGLNFKVM
EECCCCEEECCEEEEEEECCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCEEEEE
GRQFWRAG
CHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7715460 [H]