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The map label for this gene is secD [H]

Identifier: 213157925

GI number: 213157925

Start: 3527092

End: 3528993

Strand: Direct

Name: secD [H]

Synonym: AB57_3417

Alternate gene names: 213157925

Gene position: 3527092-3528993 (Clockwise)

Preceding gene: 213157924

Following gene: 213157926

Centisome position: 87.08

GC content: 42.11

Gene sequence:

>1902_bases
ATGCGTTACCCTGCATGGAAATATTTACTGATTCTGGTTGTTCTGGTAGTCAGTACATTATACGCACTGCCTAGTCTATA
TCCGGATGAGCCCGCCGTTCAAATTTCCGGTGCCAAAGCTGGTACCCAAATTGATCAAAGTGTGGTGCAAAAAGCAGAGC
AAATTTTAAAAACAGCAAATATTGCAAGCCACGATAATACTTTTACAAATAATGCTGCTCTCTTGCGTGTCAGCTCTTCT
GAAGCGCAATTGAAAGCAAAAGAAGTATTACGCCGTGACTTAGGTGATCAATATGTTGTAGCCCTAAACCTTGCACCAAC
AACTCCAGAATGGTTGCAAAAAATTGGGGCGAAACCAATGAAACTTGGTTTGGACTTACGTGGTGGTGTCCACTTCTTGC
TTGAAGTAGATATGGACAAAGCCATTTCCCAACGTATGGAAACCTCTGCCACTGATTTGCGTCGTCAGTTCCGTGAAAAC
AAAATTAAATTTAACAATCTTGCGTTAAATAATAATGTGATCACTGTTCAGTTTGCTGACAATGCGGATCGTGATGCAGC
AATGGATTTTTTACGCCGTAATGGTAATGAATATACCCAACAGGCATTAGCGAGCACGACAGGTTCAATCTTAAAGCTCA
CTTATACTGATGTACGTCGTCAAGAAATTCAGGCTTATGCAGTTAATCAGAACTTAACAACACTACGTAACCGTATTAAC
GAACTTGGTGTTGCAGAAGCTTTAGTACAAAGTCAGGGTAGCAACCGTATTGTCGTTGAATTACCGGGTGTTCAAGATAC
AGCAGAAGCTAAACGTGTTTTAGGCCGTACTGCTAACCTCGAATTCCGTTTGGTATCTGACTTAAATGATCAATATATTG
ATCCATATACGGGTAAATATAATGGTCAACCTTTACCTCCGGGTACGGAAGTTTTTGCTTATCAGTCTTTAGATAGTGGT
CGCCAACTGTTGTTGCAACGTAACCGTATCTTGACTGGTGAACGCGTTCAAAATGCAAGCTCTGGTTTTAGCCAAGACTC
TGGTGGTGCCGAAGTAAATATTACGCTCGACAGTGCTGGCGGTAAGCTGATGTCAGATGCAACCCGTAATGCAGTTGGAA
AACGCATGGCGGTATTGTTCATCGAAAATAAACAAAAGATTAGCTACGTTACAGATCCAAAAACTGGTGCTCAAACAGAA
GTTCGTACACCATATACCGAGTCTGTCGTGATTAATGCTGCAACTGTTCAAGCCGTTTTAGGTTCAACTTTCCGTATTAC
TGGTTTAAGTTCACCTCAAGAAGCATCTGAACTTGCGTTAATGCTTCGTGCTGGTGCTTTAGCTGCGCCAATGTACTTCG
TTGAAGAGCGTGTTGTGGGTCCAAGCCTTGGTCAAGAAAACATTGATAAAGGTGTACTATCAACGCAAATCGGTTTCTTA
CTTGTTGCAATCTGGATGGTCGTGTTCTTCCGTCTATTTGGTTTAATCGCGAACTTTGCACTTGTATTTAACTTGGCAAT
GATTTTAACCATTATGTCTTGGATAGGTGCTTCCCTCACCTTACCGGGTATTGCGGGTATCGTCATTACCATTGGTATGG
CCGTCGATGCCAACGTACTGATATGTGAACGTATTCGAGAAGAAATGCTCTGGGGGGCCTCACCTAAACAGGCCATTGTG
GCGGGTTATGATCGAGCCTATAACACCATTTTCGACTCGAACTTAACAACGTTCCTTGTTGCATTCATTCTGTTTGCAAT
CGGTACAGGCCCGATTAAAGGTTTCGCCGTGACATTAATGATCGGTATTATTTGCTCAATGTTTACTGCCATTACAGTAA
CGCGTGCGATTGTACAAATCATTTATGGTAAACGCCGTAACTTGAAAAAGTTGAGCATTTAA

Upstream 100 bases:

>100_bases
TGCCAGCGTAATTTCTGTATTACCAGAAGGCACTCTAAATAACCTTTAATCATAAAACAGTCGTGCTTTAGCACGGCTTT
TTCATTTAAGAAGAAAGCGA

Downstream 100 bases:

>100_bases
GGAGATCTATGATGACTAAAGTGACTCAACAGCCTTCAAAACAATATGGTCGTCCGGATGATGCAAAAATCATCCCGTTC
ATGAAGATTGCTAAACCTGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANIASHDNTFTNNAALLRVSSS
EAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFREN
KIKFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRIN
ELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSG
RQLLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTE
VRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFL
LVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIV
AGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKLSI

Sequences:

>Translated_633_residues
MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANIASHDNTFTNNAALLRVSSS
EAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFREN
KIKFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRIN
ELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSG
RQLLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTE
VRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFL
LVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIV
AGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKLSI
>Mature_633_residues
MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTANIASHDNTFTNNAALLRVSSS
EAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFREN
KIKFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRIN
ELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSG
RQLLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTE
VRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFL
LVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIV
AGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLKKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=635, Percent_Identity=46.7716535433071, Blast_Score=542, Evalue=1e-155,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 69351; Mature: 69351

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTAN
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC
IASHDNTFTNNAALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKPM
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCE
KLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFAD
EECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCEEEEEECC
NADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRIN
CCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEECCCHHHHHHHHH
ELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGKY
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
NGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDSAG
CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCC
GKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRTPYTESVVINAATVQAVL
CCHHHHHHHHHHCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHH
GSTFRITGLSSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFL
CCCEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVDANVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEHHCCCCHH
ICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
IGIICSMFTAITVTRAIVQIIYGKRRNLKKLSI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MRYPAWKYLLILVVLVVSTLYALPSLYPDEPAVQISGAKAGTQIDQSVVQKAEQILKTAN
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHC
IASHDNTFTNNAALLRVSSSEAQLKAKEVLRRDLGDQYVVALNLAPTTPEWLQKIGAKPM
CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHCCCCE
KLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKIKFNNLALNNNVITVQFAD
EECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCEEEEEECC
NADRDAAMDFLRRNGNEYTQQALASTTGSILKLTYTDVRRQEIQAYAVNQNLTTLRNRIN
CCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEECCCHHHHHHHHH
ELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVLGRTANLEFRLVSDLNDQYIDPYTGKY
HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
NGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGERVQNASSGFSQDSGGAEVNITLDSAG
CCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCEEEEEEECCC
GKLMSDATRNAVGKRMAVLFIENKQKISYVTDPKTGAQTEVRTPYTESVVINAATVQAVL
CCHHHHHHHHHHCCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEHHHHHHHH
GSTFRITGLSSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFL
CCCEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LVAIWMVVFFRLFGLIANFALVFNLAMILTIMSWIGASLTLPGIAGIVITIGMAVDANVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEEHHCCCCHH
ICERIREEMLWGASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
IGIICSMFTAITVTRAIVQIIYGKRRNLKKLSI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]