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The map label for this gene is lpsC [H]

Identifier: 213157913

GI number: 213157913

Start: 3513066

End: 3513830

Strand: Reverse

Name: lpsC [H]

Synonym: AB57_3405

Alternate gene names: 213157913

Gene position: 3513830-3513066 (Counterclockwise)

Preceding gene: 213157914

Following gene: 213157911

Centisome position: 86.75

GC content: 34.12

Gene sequence:

>765_bases
ATGAATAAAATTCCATGTAGTGTCTATATTGTTACTTTAAACTGTGGCGCTTGGTTAGAGCGAACTTTACAAAGTGTCAG
TGAGTTTGATGAAGTCATTATTTTAGACTCTGGCAGTACTGATAATACTTATGAAATTGCTCAGAGCTTTGAAAATACGC
AAATATCTCATCAAGATTGGCAAGGTTATGCTGGACAAAAAAGCTTGGCTTTAGCAAAGTGCCGTAATGATTGGGTGCTT
AATTTAGATGGCGATGAAGTTTTATCTAATGAATTAAAACAAGAAATTGTTGAGACCATTCAACAGAACAAGCTTGATGC
ATTAATCACTCCAATTAATGATGTATTTTTAGGTGTTCCGAACAGTAAACATACTAAAAAACATGCAAAAGTGCGTTTTT
TCCGTAGGTCTAAAGGGCATTATGACCTTGCCAATAAAGTCCATGAAAATGTGATCGTAGATGGTGAATCTCAGCGTGCT
CAACACGATATTTACCATTATGGTGAGTCGAGTATTTTCGTTAAAGTCGAAAAAAATAACCAATATTCCAACTTAAAAGC
ATTAGAGAAATACCAAAAAGGAAAGTCTCCAAGCATTGCAAAATTGGTTTTGGTGATGCCAGTGACTTTTATGAAGTCTT
ATTTTATTCGCCGTAGCTTCTTAAATGGTTGGCGTGGTTTCGTAAATAGTATGATTAACGCATTTTATGCATTTCTAAAA
GAAGCTAAGCTTTTTGAACAGACCATGAATAAAGATAAAAAATAA

Upstream 100 bases:

>100_bases
ACGAAGCAGATAACCAATTTAATATTCCACGTGTTAGCACGCATGGAGCCATGAATGCTTTACAGATGCGTATCGCCCTT
GCTAAAGGACGTTATAAGTT

Downstream 100 bases:

>100_bases
GTAGGCAAGCTATGAAAATTGTTCAGGTATTGGCAACTAGCGGTGGAGTTGGTGGATTAGAGCAGCACACTTTTAACCTT
GTTAATGAGCTTGCTTTAAA

Product: glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNKIPCSVYIVTLNCGAWLERTLQSVSEFDEVIILDSGSTDNTYEIAQSFENTQISHQDWQGYAGQKSLALAKCRNDWVL
NLDGDEVLSNELKQEIVETIQQNKLDALITPINDVFLGVPNSKHTKKHAKVRFFRRSKGHYDLANKVHENVIVDGESQRA
QHDIYHYGESSIFVKVEKNNQYSNLKALEKYQKGKSPSIAKLVLVMPVTFMKSYFIRRSFLNGWRGFVNSMINAFYAFLK
EAKLFEQTMNKDKK

Sequences:

>Translated_254_residues
MNKIPCSVYIVTLNCGAWLERTLQSVSEFDEVIILDSGSTDNTYEIAQSFENTQISHQDWQGYAGQKSLALAKCRNDWVL
NLDGDEVLSNELKQEIVETIQQNKLDALITPINDVFLGVPNSKHTKKHAKVRFFRRSKGHYDLANKVHENVIVDGESQRA
QHDIYHYGESSIFVKVEKNNQYSNLKALEKYQKGKSPSIAKLVLVMPVTFMKSYFIRRSFLNGWRGFVNSMINAFYAFLK
EAKLFEQTMNKDKK
>Mature_254_residues
MNKIPCSVYIVTLNCGAWLERTLQSVSEFDEVIILDSGSTDNTYEIAQSFENTQISHQDWQGYAGQKSLALAKCRNDWVL
NLDGDEVLSNELKQEIVETIQQNKLDALITPINDVFLGVPNSKHTKKHAKVRFFRRSKGHYDLANKVHENVIVDGESQRA
QHDIYHYGESSIFVKVEKNNQYSNLKALEKYQKGKSPSIAKLVLVMPVTFMKSYFIRRSFLNGWRGFVNSMINAFYAFLK
EAKLFEQTMNKDKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. WaaE/kdtX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 29228; Mature: 29228

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIPCSVYIVTLNCGAWLERTLQSVSEFDEVIILDSGSTDNTYEIAQSFENTQISHQDW
CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCHHC
QGYAGQKSLALAKCRNDWVLNLDGDEVLSNELKQEIVETIQQNKLDALITPINDVFLGVP
CCCCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHEEECC
NSKHTKKHAKVRFFRRSKGHYDLANKVHENVIVDGESQRAQHDIYHYGESSIFVKVEKNN
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCHHHHHHHHHEECCCEEEEEEECCC
QYSNLKALEKYQKGKSPSIAKLVLVMPVTFMKSYFIRRSFLNGWRGFVNSMINAFYAFLK
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAKLFEQTMNKDKK
HHHHHHHHHCCCCC
>Mature Secondary Structure
MNKIPCSVYIVTLNCGAWLERTLQSVSEFDEVIILDSGSTDNTYEIAQSFENTQISHQDW
CCCCCEEEEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCHHC
QGYAGQKSLALAKCRNDWVLNLDGDEVLSNELKQEIVETIQQNKLDALITPINDVFLGVP
CCCCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHEEECC
NSKHTKKHAKVRFFRRSKGHYDLANKVHENVIVDGESQRAQHDIYHYGESSIFVKVEKNN
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCHHHHHHHHHEECCCEEEEEEECCC
QYSNLKALEKYQKGKSPSIAKLVLVMPVTFMKSYFIRRSFLNGWRGFVNSMINAFYAFLK
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAKLFEQTMNKDKK
HHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]