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The map label for this gene is rtcB [H]

Identifier: 213157855

GI number: 213157855

Start: 3446274

End: 3447479

Strand: Direct

Name: rtcB [H]

Synonym: AB57_3342

Alternate gene names: 213157855

Gene position: 3446274-3447479 (Clockwise)

Preceding gene: 213157854

Following gene: 213157856

Centisome position: 85.08

GC content: 39.88

Gene sequence:

>1206_bases
ATGGGCATACAAAAGATATTAAACGAAGAGGCACAATATGGTGTCCCCGTTAAAATTTTCACTCAAGACATAGATAGTGA
AAGTATTGAACAACTCAAGAAGATGGCACAACTGCGATTTATATATTCTCATATTGCTGTTATGCCTGATGTGCATGTTG
GAAAAGGTGCAACTGTAGGCAGCGTCATTCCTACTAAACATGCCATTATTCCAGCTGCAGTGGGTGTAGATATTGGCTGC
GGAATGAATGCTATTCGTTTGAGCCTGAAAGCTTCACAACTTCCAGATAACTTAAGTCGCTTGCGGGACGCCATTGAACG
GAAAGTGCCGGTTGGATTTGCTTTGCATAAACAAGTCAAAGCGAAAGCTTCTAGCATTATTCCACTTGAAAAACGCTTAG
AACCTATTATTAAAAAGCATCCGGGTCTTGTCCGAATGCTTCGTCAGTTTGAGGCAACATGGCAAAAACAGTTGGGCACT
TTAGGCGGCGGTAATCACTTTATAGAGTTATGTATTGATGAAAATCAAGATGTATGGGTGATGCTCCATTCGGGCAGCCG
AGGTCTTGGTAACGTCATAGGTACTTATTTTATTGAGTTAGCCAAGAAAGAGGCACAACATCGCTTTGGGCACGTGCCTG
ATAAAGATTTAAGTTATTTTGCTGAAGGCTCGCAAAGCTTTAATGATTATGTAGAAGCCGTAGAGTGGGCTCAAGAATAT
GCTTTTGAAAATCGTAAAGAAATGATGCGATTAATATTAGAAGCAATTCGCCCTCTTCTACCTTCTTTTCAAATGACGAA
AGAAGCAATCAATTGTCACCATAACTATGTGAGTCAAGAAACACACTTTGGTGAAAACCTTTTTGTTACAAGAAAAGGGG
CAATTCGAGCAGGTTTAGATGAGTTAGGAATTATTCCAGGTTCTATGGGAGCACGCTCGTATATTGTTAAAGGTAAAGCA
AACCCTGAATCTTTTTGTTCCTGTTCTCATGGAGCTGGCCGCAAAATGAGCCGAAGCAAAGCAAAAGTTCTTTTTAATCA
GCAGGACTTGATTGAACAAACACAAGGGATTGAATGCCGTAAAGACAGTGGTGTAGTCGATGAAATTCCAAGTGCCTATA
AAGATATTGATGAGGTTATAGCCAATCAGGCAGATCTCATTGAAGTCGTTCATACTCTTAAACAAGTTTTATGTATTAAA
GGTTAA

Upstream 100 bases:

>100_bases
AGTGTACAAATTTAATTCACTTGTCCGAATGCTCGAATTTAAGACCTAGCATTCGCTAGGTTTTTTTATGCCTATTCGGA
CAATAAATAAGAGAATAATT

Downstream 100 bases:

>100_bases
GACATGAAAATTAAAGAAATGCCGAAAATTAAGGTCCGTAATCAAGTAGCTCTATCCCCTCTACTTCACAAAGGTGGTAT
GCACGAAACAGAAAAACCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MGIQKILNEEAQYGVPVKIFTQDIDSESIEQLKKMAQLRFIYSHIAVMPDVHVGKGATVGSVIPTKHAIIPAAVGVDIGC
GMNAIRLSLKASQLPDNLSRLRDAIERKVPVGFALHKQVKAKASSIIPLEKRLEPIIKKHPGLVRMLRQFEATWQKQLGT
LGGGNHFIELCIDENQDVWVMLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAEGSQSFNDYVEAVEWAQEY
AFENRKEMMRLILEAIRPLLPSFQMTKEAINCHHNYVSQETHFGENLFVTRKGAIRAGLDELGIIPGSMGARSYIVKGKA
NPESFCSCSHGAGRKMSRSKAKVLFNQQDLIEQTQGIECRKDSGVVDEIPSAYKDIDEVIANQADLIEVVHTLKQVLCIK
G

Sequences:

>Translated_401_residues
MGIQKILNEEAQYGVPVKIFTQDIDSESIEQLKKMAQLRFIYSHIAVMPDVHVGKGATVGSVIPTKHAIIPAAVGVDIGC
GMNAIRLSLKASQLPDNLSRLRDAIERKVPVGFALHKQVKAKASSIIPLEKRLEPIIKKHPGLVRMLRQFEATWQKQLGT
LGGGNHFIELCIDENQDVWVMLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAEGSQSFNDYVEAVEWAQEY
AFENRKEMMRLILEAIRPLLPSFQMTKEAINCHHNYVSQETHFGENLFVTRKGAIRAGLDELGIIPGSMGARSYIVKGKA
NPESFCSCSHGAGRKMSRSKAKVLFNQQDLIEQTQGIECRKDSGVVDEIPSAYKDIDEVIANQADLIEVVHTLKQVLCIK
G
>Mature_400_residues
GIQKILNEEAQYGVPVKIFTQDIDSESIEQLKKMAQLRFIYSHIAVMPDVHVGKGATVGSVIPTKHAIIPAAVGVDIGCG
MNAIRLSLKASQLPDNLSRLRDAIERKVPVGFALHKQVKAKASSIIPLEKRLEPIIKKHPGLVRMLRQFEATWQKQLGTL
GGGNHFIELCIDENQDVWVMLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAEGSQSFNDYVEAVEWAQEYA
FENRKEMMRLILEAIRPLLPSFQMTKEAINCHHNYVSQETHFGENLFVTRKGAIRAGLDELGIIPGSMGARSYIVKGKAN
PESFCSCSHGAGRKMSRSKAKVLFNQQDLIEQTQGIECRKDSGVVDEIPSAYKDIDEVIANQADLIEVVHTLKQVLCIKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=447, Percent_Identity=28.4116331096197, Blast_Score=124, Evalue=1e-28,
Organism=Escherichia coli, GI2367224, Length=403, Percent_Identity=53.3498759305211, Blast_Score=438, Evalue=1e-124,
Organism=Caenorhabditis elegans, GI17506665, Length=445, Percent_Identity=26.2921348314607, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24585217, Length=451, Percent_Identity=27.0509977827051, Blast_Score=116, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44615; Mature: 44484

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIQKILNEEAQYGVPVKIFTQDIDSESIEQLKKMAQLRFIYSHIAVMPDVHVGKGATVG
CCHHHHHCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SVIPTKHAIIPAAVGVDIGCGMNAIRLSLKASQLPDNLSRLRDAIERKVPVGFALHKQVK
CCCCCCHHHHHHHHCCCCCCCCHHHHEEHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH
AKASSIIPLEKRLEPIIKKHPGLVRMLRQFEATWQKQLGTLGGGNHFIELCIDENQDVWV
HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
MLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAEGSQSFNDYVEAVEWAQEY
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
AFENRKEMMRLILEAIRPLLPSFQMTKEAINCHHNYVSQETHFGENLFVTRKGAIRAGLD
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCCEEEEECCHHHHCHH
ELGIIPGSMGARSYIVKGKANPESFCSCSHGAGRKMSRSKAKVLFNQQDLIEQTQGIECR
HHCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCC
KDSGVVDEIPSAYKDIDEVIANQADLIEVVHTLKQVLCIKG
CCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GIQKILNEEAQYGVPVKIFTQDIDSESIEQLKKMAQLRFIYSHIAVMPDVHVGKGATVG
CHHHHHCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
SVIPTKHAIIPAAVGVDIGCGMNAIRLSLKASQLPDNLSRLRDAIERKVPVGFALHKQVK
CCCCCCHHHHHHHHCCCCCCCCHHHHEEHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHH
AKASSIIPLEKRLEPIIKKHPGLVRMLRQFEATWQKQLGTLGGGNHFIELCIDENQDVWV
HHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
MLHSGSRGLGNVIGTYFIELAKKEAQHRFGHVPDKDLSYFAEGSQSFNDYVEAVEWAQEY
EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
AFENRKEMMRLILEAIRPLLPSFQMTKEAINCHHNYVSQETHFGENLFVTRKGAIRAGLD
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHCCCCCEEEEECCHHHHCHH
ELGIIPGSMGARSYIVKGKANPESFCSCSHGAGRKMSRSKAKVLFNQQDLIEQTQGIECR
HHCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCC
KDSGVVDEIPSAYKDIDEVIANQADLIEVVHTLKQVLCIKG
CCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]