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The map label for this gene is yncD [H]

Identifier: 213157845

GI number: 213157845

Start: 3434760

End: 3436964

Strand: Reverse

Name: yncD [H]

Synonym: AB57_3329

Alternate gene names: 213157845

Gene position: 3436964-3434760 (Counterclockwise)

Preceding gene: 213157846

Following gene: 213157844

Centisome position: 84.85

GC content: 41.04

Gene sequence:

>2205_bases
ATGTCCTTATTACGCTTAGACCGACTTCATTACTGTATTTTGATGAGTATGGGCTGTATTTCTAGCCCACTTGTTTGGGC
CGAAGACTTAAATTCAGACGTTGCCAAATTGCCAACTTTACATGTGGAAGCGACACGTACTGACACCGGTTATTTACAAA
CACCAGCTTCGGTTTTCCGAATCGAGGCACCTCAAGTGGATAGTTCTTCACAAGTAAATTTAACTGAAGTTGTGAAGGGC
ATACCGAGTTTACAGATTCGTAACCGTGAAAATTATGCGCAAGATCTACAGCTATCTATGCGTGGTTTTGGTGCACGTTC
TACGTTTGGTGTCCGTGGTATTCGTCTTTATGTTGATGGTATCCCTGCAACAATGCCAGATGGGCAGGGCCAAACATCTA
ATATCGACTTAAGCAGCCTTGATCATGTTGAAGTTCTAACAGGACCTTTTTCTTCACTTTATGGAAATTCATCAGGCGGG
ACAATTTTAACTTCTACTAAAGAAGGGCAAGGGAAGGACTCAATTGAGCTCAGTTATTCGGGGGGTAGCCATGATAAAAG
CCGAGCAGGACTTGTGCTGCAAGGTGGGGCAAAAGGGGCGAATGAACCAAGTTATATTATTAGCTCATCATACTTTGATA
CCGACGGTTACCGCGAACATAGCGGTGCAGAAAAAGTGTTAAATAATGCAAAGCTCAGCTGGAATCTTGATGATGGTAGT
AAAATCAACTGGGTAACCAATTATGTAAAAATCCATGCCGATGATCCAATGGGGTTAGAGCGTAAGGATTGGCAAGCAAA
CCCAAAACAGATTGCTCCTTATGTAAAAAAATGGGGGTTTAACGCGCGCAAAGATATTGAACAAACTCAAACAGGTATAA
CTTGGTTTAAACCAATTAATGATCAGCACGAACTGTACGCCATGGCATATTTAGGCAATCGCCAAGTTACTCAATATCAA
TCTATCCCACAAGGTCAGGTAGTAGTGGAAAATGGCAAGCCAGTTTATACAGGTCAAAAGAGCCCTAAGCATGCTGGCGG
AGTCATTGATTTTGAACGTAATTATTATGGTGCTGATTTCCGTTGGACAGGTAAAGAACTACTACCAAATACCACTGTAA
GCATCGGGGTTGCATTCGATGCAATGGATGAGGAACGTAAAGGCTTTGAAAATTTTAATGCGGATGGTATTTATGGCGTC
AAAGGTAATTTACGCCGTGATGAAGACAATACTTTATGGAATATCGATCCATATTTACAAGCTTCATGGCAGTTCTTACC
TACGTGGCGTTTAGACACGGGTGTGCGTTATAGCAATGTCCATTACAAGTCAAAAGATCATTTTACTTCAGGGCCTGATG
AGTATGGGACTGTTAACGGTGATGATAGTGGCAAAACGGATTACGAGAAAGTTTTACCTTCTGCTGCTTTAAGTTGGCAA
ATTTTACCTGAACTCATGGCCTATGTAAGTTATGCCAAAGGTTTTGAAACACCAACTTTTACTGAAATGGCTTATCACAC
TGATATTTCAAAGTCAGGTTTTAACTTTGGTTTAAAACCATCTACAAGCGATACCTATGAAACAGGCTTAAAGTCACAAA
ATCTTTTAGGTGATTTTACTTTGGCAGTTTTCCAAACAAAGACTAAGAATGATATTGTTTCAGCGGGAAACTTAGGGGGG
CGTTCAACCTTTCGTAATGCAGATAAAACCTTACGTGAAGGTGTAGAGTTTGCATGGAATAAAAAGTTGTGGCGAGATTT
AACTGCGACTGCAAGTTATACATATTTAGATGCGACTTTTGATGCGAACGTTCCTGAAAAACTTGATCAAGACAACAAAG
TTCTCGCTTCAGCAATTCCAACAGGAAATGCCATACCAGGTATTGCCAAAAACCAAGCTTATGCCTCTTTGGCATGGCAG
CCATCGCACGGTCTATATGGTGGTGTAGATGTACAGTATATGGACAAAGTATACGTGAATGATACCAACAGTGACGCAGC
ACCGAGCTACAGTGTAACCTCAGCAAATGTTGGTTATGCATGGGTAATGGGCGATTGGAAAGTCAATAGCTTTGCTCGTG
TAGATAACCTCTTTGATAAAAAATATGCAGGTTCAGTTATTGTAAATGACGGTAATAGCCGCTATTTCGAACCTGCTGAT
GGACGTAACTGGAGTGCAGGTTTACGTGTAATTAAACAATTCTAG

Upstream 100 bases:

>100_bases
AAGAGCGTTCCAGATTTACAACAATGTAGACCGAATTCTATATCCAGACAAGACACTGCTTTTTGTTATCATAACTACAA
TATAAATAAAGGAAATAAGC

Downstream 100 bases:

>100_bases
GAATTAAAAATGGCAAAATTATTTGAAACGGTTAATTTCGATTCACTACAACTGGTCAATAGAATTGTAATTGCCCCAAT
GTGCCAATATTCGGCAACAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 734; Mature: 733

Protein sequence:

>734_residues
MSLLRLDRLHYCILMSMGCISSPLVWAEDLNSDVAKLPTLHVEATRTDTGYLQTPASVFRIEAPQVDSSSQVNLTEVVKG
IPSLQIRNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDGIPATMPDGQGQTSNIDLSSLDHVEVLTGPFSSLYGNSSGG
TILTSTKEGQGKDSIELSYSGGSHDKSRAGLVLQGGAKGANEPSYIISSSYFDTDGYREHSGAEKVLNNAKLSWNLDDGS
KINWVTNYVKIHADDPMGLERKDWQANPKQIAPYVKKWGFNARKDIEQTQTGITWFKPINDQHELYAMAYLGNRQVTQYQ
SIPQGQVVVENGKPVYTGQKSPKHAGGVIDFERNYYGADFRWTGKELLPNTTVSIGVAFDAMDEERKGFENFNADGIYGV
KGNLRRDEDNTLWNIDPYLQASWQFLPTWRLDTGVRYSNVHYKSKDHFTSGPDEYGTVNGDDSGKTDYEKVLPSAALSWQ
ILPELMAYVSYAKGFETPTFTEMAYHTDISKSGFNFGLKPSTSDTYETGLKSQNLLGDFTLAVFQTKTKNDIVSAGNLGG
RSTFRNADKTLREGVEFAWNKKLWRDLTATASYTYLDATFDANVPEKLDQDNKVLASAIPTGNAIPGIAKNQAYASLAWQ
PSHGLYGGVDVQYMDKVYVNDTNSDAAPSYSVTSANVGYAWVMGDWKVNSFARVDNLFDKKYAGSVIVNDGNSRYFEPAD
GRNWSAGLRVIKQF

Sequences:

>Translated_734_residues
MSLLRLDRLHYCILMSMGCISSPLVWAEDLNSDVAKLPTLHVEATRTDTGYLQTPASVFRIEAPQVDSSSQVNLTEVVKG
IPSLQIRNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDGIPATMPDGQGQTSNIDLSSLDHVEVLTGPFSSLYGNSSGG
TILTSTKEGQGKDSIELSYSGGSHDKSRAGLVLQGGAKGANEPSYIISSSYFDTDGYREHSGAEKVLNNAKLSWNLDDGS
KINWVTNYVKIHADDPMGLERKDWQANPKQIAPYVKKWGFNARKDIEQTQTGITWFKPINDQHELYAMAYLGNRQVTQYQ
SIPQGQVVVENGKPVYTGQKSPKHAGGVIDFERNYYGADFRWTGKELLPNTTVSIGVAFDAMDEERKGFENFNADGIYGV
KGNLRRDEDNTLWNIDPYLQASWQFLPTWRLDTGVRYSNVHYKSKDHFTSGPDEYGTVNGDDSGKTDYEKVLPSAALSWQ
ILPELMAYVSYAKGFETPTFTEMAYHTDISKSGFNFGLKPSTSDTYETGLKSQNLLGDFTLAVFQTKTKNDIVSAGNLGG
RSTFRNADKTLREGVEFAWNKKLWRDLTATASYTYLDATFDANVPEKLDQDNKVLASAIPTGNAIPGIAKNQAYASLAWQ
PSHGLYGGVDVQYMDKVYVNDTNSDAAPSYSVTSANVGYAWVMGDWKVNSFARVDNLFDKKYAGSVIVNDGNSRYFEPAD
GRNWSAGLRVIKQF
>Mature_733_residues
SLLRLDRLHYCILMSMGCISSPLVWAEDLNSDVAKLPTLHVEATRTDTGYLQTPASVFRIEAPQVDSSSQVNLTEVVKGI
PSLQIRNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDGIPATMPDGQGQTSNIDLSSLDHVEVLTGPFSSLYGNSSGGT
ILTSTKEGQGKDSIELSYSGGSHDKSRAGLVLQGGAKGANEPSYIISSSYFDTDGYREHSGAEKVLNNAKLSWNLDDGSK
INWVTNYVKIHADDPMGLERKDWQANPKQIAPYVKKWGFNARKDIEQTQTGITWFKPINDQHELYAMAYLGNRQVTQYQS
IPQGQVVVENGKPVYTGQKSPKHAGGVIDFERNYYGADFRWTGKELLPNTTVSIGVAFDAMDEERKGFENFNADGIYGVK
GNLRRDEDNTLWNIDPYLQASWQFLPTWRLDTGVRYSNVHYKSKDHFTSGPDEYGTVNGDDSGKTDYEKVLPSAALSWQI
LPELMAYVSYAKGFETPTFTEMAYHTDISKSGFNFGLKPSTSDTYETGLKSQNLLGDFTLAVFQTKTKNDIVSAGNLGGR
STFRNADKTLREGVEFAWNKKLWRDLTATASYTYLDATFDANVPEKLDQDNKVLASAIPTGNAIPGIAKNQAYASLAWQP
SHGLYGGVDVQYMDKVYVNDTNSDAAPSYSVTSANVGYAWVMGDWKVNSFARVDNLFDKKYAGSVIVNDGNSRYFEPADG
RNWSAGLRVIKQF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=724, Percent_Identity=44.8895027624309, Blast_Score=600, Evalue=1e-172,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 81330; Mature: 81199

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLRLDRLHYCILMSMGCISSPLVWAEDLNSDVAKLPTLHVEATRTDTGYLQTPASVFR
CCCHHHHHHHHHHHHHHHHCCCCCEEHHHCCCHHHHCCEEEEEEECCCCCCEECCCHHEE
IEAPQVDSSSQVNLTEVVKGIPSLQIRNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDG
EECCCCCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
IPATMPDGQGQTSNIDLSSLDHVEVLTGPFSSLYGNSSGGTILTSTKEGQGKDSIELSYS
CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEC
GGSHDKSRAGLVLQGGAKGANEPSYIISSSYFDTDGYREHSGAEKVLNNAKLSWNLDDGS
CCCCCCCCCCEEEECCCCCCCCCCEEEECCEECCCCCCCCCCHHHHHCCCEEEEECCCCC
KINWVTNYVKIHADDPMGLERKDWQANPKQIAPYVKKWGFNARKDIEQTQTGITWFKPIN
EEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEEEECCC
DQHELYAMAYLGNRQVTQYQSIPQGQVVVENGKPVYTGQKSPKHAGGVIDFERNYYGADF
CCCEEEEEEEECCCCCHHHHCCCCCCEEEECCCEEECCCCCCCCCCCEEEECCCEECCCE
RWTGKELLPNTTVSIGVAFDAMDEERKGFENFNADGIYGVKGNLRRDEDNTLWNIDPYLQ
EECCHHHCCCCEEEEEEEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCEEECCHHHC
ASWQFLPTWRLDTGVRYSNVHYKSKDHFTSGPDEYGTVNGDDSGKTDYEKVLPSAALSWQ
CCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHH
ILPELMAYVSYAKGFETPTFTEMAYHTDISKSGFNFGLKPSTSDTYETGLKSQNLLGDFT
HHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEE
LAVFQTKTKNDIVSAGNLGGRSTFRNADKTLREGVEFAWNKKLWRDLTATASYTYLDATF
EEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
DANVPEKLDQDNKVLASAIPTGNAIPGIAKNQAYASLAWQPSHGLYGGVDVQYMDKVYVN
CCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEE
DTNSDAAPSYSVTSANVGYAWVMGDWKVNSFARVDNLFDKKYAGSVIVNDGNSRYFEPAD
CCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEECCCC
GRNWSAGLRVIKQF
CCCHHHHHHHHHCC
>Mature Secondary Structure 
SLLRLDRLHYCILMSMGCISSPLVWAEDLNSDVAKLPTLHVEATRTDTGYLQTPASVFR
CCHHHHHHHHHHHHHHHHCCCCCEEHHHCCCHHHHCCEEEEEEECCCCCCEECCCHHEE
IEAPQVDSSSQVNLTEVVKGIPSLQIRNRENYAQDLQLSMRGFGARSTFGVRGIRLYVDG
EECCCCCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
IPATMPDGQGQTSNIDLSSLDHVEVLTGPFSSLYGNSSGGTILTSTKEGQGKDSIELSYS
CCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCEEEEECCCCCCCCCEEEEEC
GGSHDKSRAGLVLQGGAKGANEPSYIISSSYFDTDGYREHSGAEKVLNNAKLSWNLDDGS
CCCCCCCCCCEEEECCCCCCCCCCEEEECCEECCCCCCCCCCHHHHHCCCEEEEECCCCC
KINWVTNYVKIHADDPMGLERKDWQANPKQIAPYVKKWGFNARKDIEQTQTGITWFKPIN
EEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCEEEECCC
DQHELYAMAYLGNRQVTQYQSIPQGQVVVENGKPVYTGQKSPKHAGGVIDFERNYYGADF
CCCEEEEEEEECCCCCHHHHCCCCCCEEEECCCEEECCCCCCCCCCCEEEECCCEECCCE
RWTGKELLPNTTVSIGVAFDAMDEERKGFENFNADGIYGVKGNLRRDEDNTLWNIDPYLQ
EECCHHHCCCCEEEEEEEEECCCHHHHCCCCCCCCEEEECCCCCCCCCCCCEEECCHHHC
ASWQFLPTWRLDTGVRYSNVHYKSKDHFTSGPDEYGTVNGDDSGKTDYEKVLPSAALSWQ
CCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHH
ILPELMAYVSYAKGFETPTFTEMAYHTDISKSGFNFGLKPSTSDTYETGLKSQNLLGDFT
HHHHHHHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEE
LAVFQTKTKNDIVSAGNLGGRSTFRNADKTLREGVEFAWNKKLWRDLTATASYTYLDATF
EEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
DANVPEKLDQDNKVLASAIPTGNAIPGIAKNQAYASLAWQPSHGLYGGVDVQYMDKVYVN
CCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEE
DTNSDAAPSYSVTSANVGYAWVMGDWKVNSFARVDNLFDKKYAGSVIVNDGNSRYFEPAD
CCCCCCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEECCCCCEECCCC
GRNWSAGLRVIKQF
CCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]