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The map label for this gene is yqhC [H]

Identifier: 213157786

GI number: 213157786

Start: 3366812

End: 3367519

Strand: Reverse

Name: yqhC [H]

Synonym: AB57_3267

Alternate gene names: 213157786

Gene position: 3367519-3366812 (Counterclockwise)

Preceding gene: 213157787

Following gene: 213157785

Centisome position: 83.14

GC content: 37.85

Gene sequence:

>708_bases
ATGGGAAAAGATATTTTTAAGTTTCAACAAGGACAGTGTTTATTTATCTCAATTGCTATCCCTTTTGATTGCGATACCTT
GGTTGAGCGTGAACCAATGCTTGCAATTGCGATTAAATTTGAACCTCAAATGATGGCCGAGCTGGCGACTAAAATGGATA
AAGAGCAGCGACCACTTATAGAAGATTTTGATAACAAAGAGATAAAACTGAGCTGTGGTTTAAATATTATTGAAATGAAC
TCGGTTATATCTGATGTTGCTTTACGCTTGTTGAACTTACTTCGTTCCAAGCAAGATACTGCAATCTTAGGAGAGCAGGT
GAAACGCGAACTTATTTATCGGGTTTTACAAGCTGGCGGTAGTGATTTTATCCAGAACCTTTCGGCTATTATGAGCCGAA
GTGGAGTGATTTATACGATTTGTGAAATTATTCAAAGAGATTATTATCGTAACTTAACGGTTCAGGAGTTGGCTAAACAA
GCAGGAATGAGTGTTTCGCTTTTTCATCAAGCTTTTAAGAAAGTTACCAACTATTCTCCATTACAGTACATCAAAATTAC
TCGGTTACATAAGGCACGTGAACTAATCCTAAATAACCAAATGGGCGTTGCAGAAGCTGCCTATGAGGTAGGATATGTGA
GTGCCTCACAGTTTAGTCGAGAGTTTAAGCGGCTGTTTGGAGTTCCACCTAAATTATCAACAAACTAA

Upstream 100 bases:

>100_bases
AAATATCACCCTGATGAGGGTAGATCATTCCACACAGCCGGTTGCTGTATTGCAAGAGCCTTCCATCGTTCTAGTCATTC
AGGGTGTAAAACGGGCTTAT

Downstream 100 bases:

>100_bases
AGTAAATCAACACGTCTTAAATATAAACCAAACATGGAGCATATCAATGAATCTACCGACAACCATGAAAATTGTTGAAA
TTACGGTTCCTGGCGGACCT

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MGKDIFKFQQGQCLFISIAIPFDCDTLVEREPMLAIAIKFEPQMMAELATKMDKEQRPLIEDFDNKEIKLSCGLNIIEMN
SVISDVALRLLNLLRSKQDTAILGEQVKRELIYRVLQAGGSDFIQNLSAIMSRSGVIYTICEIIQRDYYRNLTVQELAKQ
AGMSVSLFHQAFKKVTNYSPLQYIKITRLHKARELILNNQMGVAEAAYEVGYVSASQFSREFKRLFGVPPKLSTN

Sequences:

>Translated_235_residues
MGKDIFKFQQGQCLFISIAIPFDCDTLVEREPMLAIAIKFEPQMMAELATKMDKEQRPLIEDFDNKEIKLSCGLNIIEMN
SVISDVALRLLNLLRSKQDTAILGEQVKRELIYRVLQAGGSDFIQNLSAIMSRSGVIYTICEIIQRDYYRNLTVQELAKQ
AGMSVSLFHQAFKKVTNYSPLQYIKITRLHKARELILNNQMGVAEAAYEVGYVSASQFSREFKRLFGVPPKLSTN
>Mature_234_residues
GKDIFKFQQGQCLFISIAIPFDCDTLVEREPMLAIAIKFEPQMMAELATKMDKEQRPLIEDFDNKEIKLSCGLNIIEMNS
VISDVALRLLNLLRSKQDTAILGEQVKRELIYRVLQAGGSDFIQNLSAIMSRSGVIYTICEIIQRDYYRNLTVQELAKQA
GMSVSLFHQAFKKVTNYSPLQYIKITRLHKARELILNNQMGVAEAAYEVGYVSASQFSREFKRLFGVPPKLSTN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=232, Percent_Identity=38.7931034482759, Blast_Score=146, Evalue=1e-36,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26772; Mature: 26640

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKDIFKFQQGQCLFISIAIPFDCDTLVEREPMLAIAIKFEPQMMAELATKMDKEQRPLI
CCCCCCEECCCCEEEEEEEECCCCHHHHCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCH
EDFDNKEIKLSCGLNIIEMNSVISDVALRLLNLLRSKQDTAILGEQVKRELIYRVLQAGG
HCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
SDFIQNLSAIMSRSGVIYTICEIIQRDYYRNLTVQELAKQAGMSVSLFHQAFKKVTNYSP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
LQYIKITRLHKARELILNNQMGVAEAAYEVGYVSASQFSREFKRLFGVPPKLSTN
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GKDIFKFQQGQCLFISIAIPFDCDTLVEREPMLAIAIKFEPQMMAELATKMDKEQRPLI
CCCCCEECCCCEEEEEEEECCCCHHHHCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCH
EDFDNKEIKLSCGLNIIEMNSVISDVALRLLNLLRSKQDTAILGEQVKRELIYRVLQAGG
HCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
SDFIQNLSAIMSRSGVIYTICEIIQRDYYRNLTVQELAKQAGMSVSLFHQAFKKVTNYSP
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCC
LQYIKITRLHKARELILNNQMGVAEAAYEVGYVSASQFSREFKRLFGVPPKLSTN
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]