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The map label for this gene is ytfH [H]

Identifier: 213157666

GI number: 213157666

Start: 3268326

End: 3268706

Strand: Direct

Name: ytfH [H]

Synonym: AB57_3144

Alternate gene names: 213157666

Gene position: 3268326-3268706 (Clockwise)

Preceding gene: 213157664

Following gene: 213157674

Centisome position: 80.69

GC content: 34.65

Gene sequence:

>381_bases
ATGAATGAATGTCTAAAATATAATATTTTTCAACAACATTGCCCTGCTCGACTGTTTTTTGAAAAAATTGCAGACAAATG
GGTTTTACTCATCTTAAATATTCTTGAGCATGAAACTCAGCACTTCAACTTACTTAAAAAAAATATTGAAGGGATTTCAC
CTAAAGTCTTGTCTCAGAAGTTAAAAATGTTAGAGAGAGACGGTTTTATCGAACGAAAAATTCAGGATACTTCCCCTATT
CGTGTCGATTATTCCCTCACGCCACTTGGGCAAAATGTAGCTGCTATGGCGTATCAGTTAAAAGAGTGGGCTGAAACTAA
TATTGAGCAAGTTTTAGCAGCCCAAATCATCTATGACGAAAAAATACTAGATCAAGCTTAA

Upstream 100 bases:

>100_bases
TTTATTAAATTCCATTTAATGATATATTTTAGATACTAGGTGTCAATTAGTTACCATTTGGTAACTATCCTATTTTTTTA
GAAAAGAGAGGGTAAATTAG

Downstream 100 bases:

>100_bases
ATAAAAATAAGGCCACTAAGGGCCTTATTTTTATTCAGTACTTAAGAAATTAACCTAATTTTTTAAAGCCTTGCTGACGC
CATGCTTCATATACAATTAC

Product: transcriptional regulator, PadR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 126

Protein sequence:

>126_residues
MNECLKYNIFQQHCPARLFFEKIADKWVLLILNILEHETQHFNLLKKNIEGISPKVLSQKLKMLERDGFIERKIQDTSPI
RVDYSLTPLGQNVAAMAYQLKEWAETNIEQVLAAQIIYDEKILDQA

Sequences:

>Translated_126_residues
MNECLKYNIFQQHCPARLFFEKIADKWVLLILNILEHETQHFNLLKKNIEGISPKVLSQKLKMLERDGFIERKIQDTSPI
RVDYSLTPLGQNVAAMAYQLKEWAETNIEQVLAAQIIYDEKILDQA
>Mature_126_residues
MNECLKYNIFQQHCPARLFFEKIADKWVLLILNILEHETQHFNLLKKNIEGISPKVLSQKLKMLERDGFIERKIQDTSPI
RVDYSLTPLGQNVAAMAYQLKEWAETNIEQVLAAQIIYDEKILDQA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=114, Percent_Identity=39.4736842105263, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 14745; Mature: 14745

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNECLKYNIFQQHCPARLFFEKIADKWVLLILNILEHETQHFNLLKKNIEGISPKVLSQK
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LKMLERDGFIERKIQDTSPIRVDYSLTPLGQNVAAMAYQLKEWAETNIEQVLAAQIIYDE
HHHHHHCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KILDQA
HHHCCC
>Mature Secondary Structure
MNECLKYNIFQQHCPARLFFEKIADKWVLLILNILEHETQHFNLLKKNIEGISPKVLSQK
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LKMLERDGFIERKIQDTSPIRVDYSLTPLGQNVAAMAYQLKEWAETNIEQVLAAQIIYDE
HHHHHHCCHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KILDQA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]