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The map label for this gene is sdhC [H]

Identifier: 213157653

GI number: 213157653

Start: 3255534

End: 3255896

Strand: Reverse

Name: sdhC [H]

Synonym: AB57_3131

Alternate gene names: 213157653

Gene position: 3255896-3255534 (Counterclockwise)

Preceding gene: 213157655

Following gene: 213157652

Centisome position: 80.38

GC content: 39.39

Gene sequence:

>363_bases
ATGGGTCAGGTGTTAGCGGTAAATTTACGCTCACCCGTGGCTATTGCATCAATTTTACACCGTTTATCAGGTGTCATCGT
TTTCTTATTAGTACCAGTTCTCTTATGGATTCTAGATAAATCATTATCTTCACCAGAAGGATTTGACTACGTTAAAAATG
TCGTTTTTGGAAATATCCTCGTACGTTTTGTTGTGTGGGTATTTGTAGCCGGCTTGATTTTCCACTTTATTGCTGGGGTT
AAGCATTTGCTTGCAGATCTAGGTTTTGCTGAAGAACTGCAAAGCGGTCGTATTGCAGCGACAATTTCATTGATCTTATC
TGTGGTAGCCATTATCGCAGCCTTTGTATGGATTATGTTCTAA

Upstream 100 bases:

>100_bases
ACAATGCCAGCTTTCCTTGGAATTAATTCAACAAACTCCGGTCGGAGTTTCTACCTACAGGATGCCCGCTGTGAAAAGCA
ACAGACCTGTCAATTTGTCC

Downstream 100 bases:

>100_bases
TGAAAAGTGCTACAGGTTTAACAGGTTCAGGTTCTCGTGATTGGTTTATCCAGCGTGTAAGTGCTGTGGTATTGGCAGCT
TATACTGTTGTTCTTTTTGG

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGV
KHLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIMF

Sequences:

>Translated_120_residues
MGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGV
KHLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIMF
>Mature_119_residues
GQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNILVRFVVWVFVAGLIFHFIAGVK
HLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIMF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=104, Percent_Identity=44.2307692307692, Blast_Score=94, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13103; Mature: 12972

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNIL
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VRFVVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIMF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
GQVLAVNLRSPVAIASILHRLSGVIVFLLVPVLLWILDKSLSSPEGFDYVKNVVFGNIL
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
VRFVVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRIAATISLILSVVAIIAAFVWIMF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]