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The map label for this gene is vqsM [H]

Identifier: 213157140

GI number: 213157140

Start: 1905813

End: 1906832

Strand: Direct

Name: vqsM [H]

Synonym: AB57_1823

Alternate gene names: 213157140

Gene position: 1905813-1906832 (Clockwise)

Preceding gene: 213157138

Following gene: 213157141

Centisome position: 47.05

GC content: 35.98

Gene sequence:

>1020_bases
ATGAAACGATCGGCACTTGGTTTAATCTATTTAATTCAAGGAATGCGCAATGCGGGCATTGATGTCGACTCACGTTTGGC
AGATATAGGTATTAAAGTAGATTCCCTGGACCCAAGCTCAACAATTCATGACAGTTTGGAATGGGATATACAGCAAATTA
TTAGTGAGAATGTTGACCCAGAGAAAGGATTATTTATTGGACAACATTACGCATTGGCAGGTTATGGTCCTTTACTCATG
TTACTTGTGACCAGTCATGACATACAAACGGCGTTAGAAAAAGGCATACAGTATCAAAAGCTTACTCATTTATTTGGTAC
TTTGAGCTTACAAGAAACTGAAAATCACATCATTTTGAACTATTTACCGGTCGATTTAAAAACAGAAATCGGTTTACTTC
GGGCCCAATGCGAAATTTCGGGTACTTATAAGTTTATTCAGGATATTTATACCATGATGGGCTTAAAAATGCCTGATATG
CGTATAGATTTACCATTTCCGAAACCCTCTGATCCAGATACCGTTGCTCAATATTACGCATATTATGGAGATGATCTACA
TTTTAATTCTACACATGCAGCATTTAGCCTAAGTAAGAATGTGCTGGAAATAAAAATTCCTTCAGCAGATATTATTACTC
ATCGTATCTATGAGGCTAAATGTATCAAAGAAATAGAAAGATTAAATGAACAAGATCATCAAATACCGCCTATTATTCAA
TATGTGCAAGATTATTTAGAGCTACAACAAGGAATTATCCCGAGCATGGCGGAAACCGCTTTTGCTTTGAAAATGCCTGA
AAGGACATTAAGGCATCAATTGCAGCAGCTTAATACGAGTTATAAACAAATTCGTGAACAGATTATTAAGAATAAGGCGC
TTAAACTTATGGAATATAAAGAGTATTCAATAGAAGTTATTGCAGAAGCACTTGGTTATTCTGAACCTGCCGCTTTTAAT
CATGCATTTAAAAGATGGTTTGGACAGAGTCCTCGGCAATATGGAAAAGAGTTTTACTGA

Upstream 100 bases:

>100_bases
TTAAACATGATTGTATCGACGTGAAAATTGATAGATTCGGCAATTAATTTTATCACTTCTTTATAGTAAAACATTTCAGT
CTAGGGAAATTGATAAAAGA

Downstream 100 bases:

>100_bases
GTGTAACTCTTGATGCTAAAAGCTAATGTGGTCGGACAAAATGTTCGCTATACTCTCTTCAGTTAAAATTGAAATAAAAT
GATATGTTAAATTTAAAATC

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: Virulence and quorum sensing modulator protein [H]

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKRSALGLIYLIQGMRNAGIDVDSRLADIGIKVDSLDPSSTIHDSLEWDIQQIISENVDPEKGLFIGQHYALAGYGPLLM
LLVTSHDIQTALEKGIQYQKLTHLFGTLSLQETENHIILNYLPVDLKTEIGLLRAQCEISGTYKFIQDIYTMMGLKMPDM
RIDLPFPKPSDPDTVAQYYAYYGDDLHFNSTHAAFSLSKNVLEIKIPSADIITHRIYEAKCIKEIERLNEQDHQIPPIIQ
YVQDYLELQQGIIPSMAETAFALKMPERTLRHQLQQLNTSYKQIREQIIKNKALKLMEYKEYSIEVIAEALGYSEPAAFN
HAFKRWFGQSPRQYGKEFY

Sequences:

>Translated_339_residues
MKRSALGLIYLIQGMRNAGIDVDSRLADIGIKVDSLDPSSTIHDSLEWDIQQIISENVDPEKGLFIGQHYALAGYGPLLM
LLVTSHDIQTALEKGIQYQKLTHLFGTLSLQETENHIILNYLPVDLKTEIGLLRAQCEISGTYKFIQDIYTMMGLKMPDM
RIDLPFPKPSDPDTVAQYYAYYGDDLHFNSTHAAFSLSKNVLEIKIPSADIITHRIYEAKCIKEIERLNEQDHQIPPIIQ
YVQDYLELQQGIIPSMAETAFALKMPERTLRHQLQQLNTSYKQIREQIIKNKALKLMEYKEYSIEVIAEALGYSEPAAFN
HAFKRWFGQSPRQYGKEFY
>Mature_339_residues
MKRSALGLIYLIQGMRNAGIDVDSRLADIGIKVDSLDPSSTIHDSLEWDIQQIISENVDPEKGLFIGQHYALAGYGPLLM
LLVTSHDIQTALEKGIQYQKLTHLFGTLSLQETENHIILNYLPVDLKTEIGLLRAQCEISGTYKFIQDIYTMMGLKMPDM
RIDLPFPKPSDPDTVAQYYAYYGDDLHFNSTHAAFSLSKNVLEIKIPSADIITHRIYEAKCIKEIERLNEQDHQIPPIIQ
YVQDYLELQQGIIPSMAETAFALKMPERTLRHQLQQLNTSYKQIREQIIKNKALKLMEYKEYSIEVIAEALGYSEPAAFN
HAFKRWFGQSPRQYGKEFY

Specific function: Transcriptional regulator involved in both the repression (at least 99 genes, such as mexR and algU) and in the activation (at least 203 genes, such as mvfR, rsaL, vqsR and rpoS) of regulatory or putative regulatory proteins which are implicated in quorum

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38909; Mature: 38909

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSALGLIYLIQGMRNAGIDVDSRLADIGIKVDSLDPSSTIHDSLEWDIQQIISENVDP
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
EKGLFIGQHYALAGYGPLLMLLVTSHDIQTALEKGIQYQKLTHLFGTLSLQETENHIILN
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCEEECCCCEEEEE
YLPVDLKTEIGLLRAQCEISGTYKFIQDIYTMMGLKMPDMRIDLPFPKPSDPDTVAQYYA
EECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHH
YYGDDLHFNSTHAAFSLSKNVLEIKIPSADIITHRIYEAKCIKEIERLNEQDHQIPPIIQ
HHCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
YVQDYLELQQGIIPSMAETAFALKMPERTLRHQLQQLNTSYKQIREQIIKNKALKLMEYK
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYSIEVIAEALGYSEPAAFNHAFKRWFGQSPRQYGKEFY
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure
MKRSALGLIYLIQGMRNAGIDVDSRLADIGIKVDSLDPSSTIHDSLEWDIQQIISENVDP
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
EKGLFIGQHYALAGYGPLLMLLVTSHDIQTALEKGIQYQKLTHLFGTLSLQETENHIILN
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCEEECCCCEEEEE
YLPVDLKTEIGLLRAQCEISGTYKFIQDIYTMMGLKMPDMRIDLPFPKPSDPDTVAQYYA
EECCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHHHHH
YYGDDLHFNSTHAAFSLSKNVLEIKIPSADIITHRIYEAKCIKEIERLNEQDHQIPPIIQ
HHCCCCCCCCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
YVQDYLELQQGIIPSMAETAFALKMPERTLRHQLQQLNTSYKQIREQIIKNKALKLMEYK
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYSIEVIAEALGYSEPAAFNHAFKRWFGQSPRQYGKEFY
HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]