Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 213156905

GI number: 213156905

Start: 1660683

End: 1661900

Strand: Direct

Name: yfdE [H]

Synonym: AB57_1576

Alternate gene names: 213156905

Gene position: 1660683-1661900 (Clockwise)

Preceding gene: 213156902

Following gene: 213156906

Centisome position: 41.0

GC content: 44.01

Gene sequence:

>1218_bases
ATGGGTGCTTTAAATGGAATTCGGGTGCTTGACTTAAGTCGGGTATTGGCTGGACCTTGGTGTGGACAGATTCTTGCCGA
TTTAGGCGCAGAAGTAATCAAGATTGAAAGACCGAAAGTCGGTGACGATACCCGTTCTTGGGGGCCACCTTGGATGAAAG
ATGACTCAGGCCAAGACACTCAAGAAGCTGCTTATTATCAGTCTACCAACCGCAATAAACTATCGGTTGCCATCGACATT
GCCAGTTCTGAAGGCCAAGAATTGATTAAAGCCCTCATTCAAGACACCGATGTCGTGATTGAAAACTACAAAGCGGGTTC
TTTAAAAAAATACGGCTTAGACTACGAGTCTTTATCTGCGATTAACCCTGAACTGGTGTATTGCTCGATTACAGGTTTTG
GTCAAACTGGCCCAAGAGCAGAAGAGCCTGGTTATGACTTTATTATTCAGGGCATGGGCGGGCTCATGTCGGTCACTGGT
GAGCGTGATGATTTGCCGGGTGGCGGTCCACAAAAAGTAGGCGTTGCATTTTCTGACTTAGCCACGGGGCTTTATTCTAC
GATTGCCATACAGGCTGCTTTACTCAACCGCCATGTGACGGGTTTAGGCCAATATATTGATATGGCTTTGCTTGATGTTC
AAATTGCCACAATGGCAAATCAGGGAATGAACTATCTTTCATCGGGTAATATCCCTAAACGTTATGGCAATGCACACGCC
AATATTGTCCCTTATCAAGTGTTCAAAGCTTCTGACCGTGATTTTATTATTGCATGCGGAAATGACACTCAGTTTATTCA
GCTTTGTAGAAGTATTGGCTTACCCGATTTACCGAATGATCCGCGTTTTGCCCGAAATGCAGATCGAATTAAGCATCGTG
ATGAAATTATCGGAATTTTACAAACTCACTTTTTAACAAAAACAGCAGATGAATGGGTAGATGCAATCTATGCTGCTAAA
GTTCCCGTTGGTGTGATTAATAACTTGGAACAAGCTTTTGAAGAGCCACAAGTGATTGCCCGTGAAATGTTAGTCGAGAT
GAACCATCCTCAACGTGAGAAACTGAAGGTAATTGGGTCACCAATCAAACTTTCGAGAACACCCGTAGAGTACAAAACAG
CACCTCCGCTGTTGGGTGAACATACGCAGGCCGTTTTGGGGCGAATAGTTTCTTCAGAAAAACTAGCAGAGCTTAAAGAA
AAGGGCGTAATTGGGTAA

Upstream 100 bases:

>100_bases
CAAGAGAGCTGTGTATATTAAAAATATATATCGCTATGCGAAATTTTAAATGGATAATTTTTCCTATAGGAAATAAGTCA
CAAAATATAGTGGGATAAAG

Downstream 100 bases:

>100_bases
GTGGCTTAAAAGCGGAAGATTACAATTATATTTAAAATCAGAAAATAAAATATTTAATCTTTCGCTTTAATAAGTTAAAT
GAAGTTATCTTTAAAATGCA

Product: L-carnitine dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 404

Protein sequence:

>405_residues
MGALNGIRVLDLSRVLAGPWCGQILADLGAEVIKIERPKVGDDTRSWGPPWMKDDSGQDTQEAAYYQSTNRNKLSVAIDI
ASSEGQELIKALIQDTDVVIENYKAGSLKKYGLDYESLSAINPELVYCSITGFGQTGPRAEEPGYDFIIQGMGGLMSVTG
ERDDLPGGGPQKVGVAFSDLATGLYSTIAIQAALLNRHVTGLGQYIDMALLDVQIATMANQGMNYLSSGNIPKRYGNAHA
NIVPYQVFKASDRDFIIACGNDTQFIQLCRSIGLPDLPNDPRFARNADRIKHRDEIIGILQTHFLTKTADEWVDAIYAAK
VPVGVINNLEQAFEEPQVIAREMLVEMNHPQREKLKVIGSPIKLSRTPVEYKTAPPLLGEHTQAVLGRIVSSEKLAELKE
KGVIG

Sequences:

>Translated_405_residues
MGALNGIRVLDLSRVLAGPWCGQILADLGAEVIKIERPKVGDDTRSWGPPWMKDDSGQDTQEAAYYQSTNRNKLSVAIDI
ASSEGQELIKALIQDTDVVIENYKAGSLKKYGLDYESLSAINPELVYCSITGFGQTGPRAEEPGYDFIIQGMGGLMSVTG
ERDDLPGGGPQKVGVAFSDLATGLYSTIAIQAALLNRHVTGLGQYIDMALLDVQIATMANQGMNYLSSGNIPKRYGNAHA
NIVPYQVFKASDRDFIIACGNDTQFIQLCRSIGLPDLPNDPRFARNADRIKHRDEIIGILQTHFLTKTADEWVDAIYAAK
VPVGVINNLEQAFEEPQVIAREMLVEMNHPQREKLKVIGSPIKLSRTPVEYKTAPPLLGEHTQAVLGRIVSSEKLAELKE
KGVIG
>Mature_404_residues
GALNGIRVLDLSRVLAGPWCGQILADLGAEVIKIERPKVGDDTRSWGPPWMKDDSGQDTQEAAYYQSTNRNKLSVAIDIA
SSEGQELIKALIQDTDVVIENYKAGSLKKYGLDYESLSAINPELVYCSITGFGQTGPRAEEPGYDFIIQGMGGLMSVTGE
RDDLPGGGPQKVGVAFSDLATGLYSTIAIQAALLNRHVTGLGQYIDMALLDVQIATMANQGMNYLSSGNIPKRYGNAHAN
IVPYQVFKASDRDFIIACGNDTQFIQLCRSIGLPDLPNDPRFARNADRIKHRDEIIGILQTHFLTKTADEWVDAIYAAKV
PVGVINNLEQAFEEPQVIAREMLVEMNHPQREKLKVIGSPIKLSRTPVEYKTAPPLLGEHTQAVLGRIVSSEKLAELKEK
GVIG

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=41.9354838709677, Blast_Score=334, Evalue=8e-92,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=39.1608391608392, Blast_Score=320, Evalue=1e-87,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=35.6643356643357, Blast_Score=274, Evalue=1e-73,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=35.9801488833747, Blast_Score=273, Evalue=2e-73,
Organism=Homo sapiens, GI42794625, Length=416, Percent_Identity=24.2788461538462, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266456254, Length=416, Percent_Identity=24.2788461538462, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI266458393, Length=276, Percent_Identity=27.1739130434783, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458397, Length=276, Percent_Identity=27.1739130434783, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=31.25, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=30.2631578947368, Blast_Score=82, Evalue=9e-16,
Organism=Escherichia coli, GI87082093, Length=364, Percent_Identity=35.7142857142857, Blast_Score=250, Evalue=9e-68,
Organism=Escherichia coli, GI1788717, Length=424, Percent_Identity=29.9528301886792, Blast_Score=175, Evalue=6e-45,
Organism=Escherichia coli, GI1786222, Length=420, Percent_Identity=27.1428571428571, Blast_Score=105, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=314, Percent_Identity=26.7515923566879, Blast_Score=98, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=346, Percent_Identity=24.5664739884393, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=45.1612903225806, Blast_Score=367, Evalue=1e-101,
Organism=Drosophila melanogaster, GI24585488, Length=320, Percent_Identity=26.875, Blast_Score=108, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44212; Mature: 44081

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGALNGIRVLDLSRVLAGPWCGQILADLGAEVIKIERPKVGDDTRSWGPPWMKDDSGQDT
CCCCCCEEHEEHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
QEAAYYQSTNRNKLSVAIDIASSEGQELIKALIQDTDVVIENYKAGSLKKYGLDYESLSA
HHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCHHEEECCCCCCCHHHCCCHHHHHC
INPELVYCSITGFGQTGPRAEEPGYDFIIQGMGGLMSVTGERDDLPGGGPQKVGVAFSDL
CCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHH
ATGLYSTIAIQAALLNRHVTGLGQYIDMALLDVQIATMANQGMNYLSSGNIPKRYGNAHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCC
NIVPYQVFKASDRDFIIACGNDTQFIQLCRSIGLPDLPNDPRFARNADRIKHRDEIIGIL
CCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHH
QTHFLTKTADEWVDAIYAAKVPVGVINNLEQAFEEPQVIAREMLVEMNHPQREKLKVIGS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHCCC
PIKLSRTPVEYKTAPPLLGEHTQAVLGRIVSSEKLAELKEKGVIG
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GALNGIRVLDLSRVLAGPWCGQILADLGAEVIKIERPKVGDDTRSWGPPWMKDDSGQDT
CCCCCEEHEEHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCH
QEAAYYQSTNRNKLSVAIDIASSEGQELIKALIQDTDVVIENYKAGSLKKYGLDYESLSA
HHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHCCCHHEEECCCCCCCHHHCCCHHHHHC
INPELVYCSITGFGQTGPRAEEPGYDFIIQGMGGLMSVTGERDDLPGGGPQKVGVAFSDL
CCCEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHHHH
ATGLYSTIAIQAALLNRHVTGLGQYIDMALLDVQIATMANQGMNYLSSGNIPKRYGNAHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCC
NIVPYQVFKASDRDFIIACGNDTQFIQLCRSIGLPDLPNDPRFARNADRIKHRDEIIGIL
CCCEEEEEECCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHH
QTHFLTKTADEWVDAIYAAKVPVGVINNLEQAFEEPQVIAREMLVEMNHPQREKLKVIGS
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHCCC
PIKLSRTPVEYKTAPPLLGEHTQAVLGRIVSSEKLAELKEKGVIG
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]