| Definition | Thermococcus onnurineus NA1, complete genome. |
|---|---|
| Accession | NC_011529 |
| Length | 1,847,607 |
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The map label for this gene is polC [H]
Identifier: 212224793
GI number: 212224793
Start: 1500693
End: 1506008
Strand: Reverse
Name: polC [H]
Synonym: TON_1642
Alternate gene names: 212224793
Gene position: 1506008-1500693 (Counterclockwise)
Preceding gene: 212224794
Following gene: 212224792
Centisome position: 81.51
GC content: 53.09
Gene sequence:
>5316_bases ATGGCCGAGCTGTATTCTGAAAAAATGAAAGCTTACTTTGAATCTCTCCAGCGCGAGATTGACAGGGCCTACGAGATAGC GAGAAAGGCCCGCGCTCAGGGTAAGGACCCGAGCACCGATGTTGAGGTTCCTCAAGCTACTGACATGGCCGGTCGTGTCG AAAGCCTCGTTGGCCCTCCAGGCGTTGCCGAGAGGATTAGGGCGCTCGTCAAAGAGTATGGAAAGGAACTGGCCGCCCTT AAGGTCGTTGACGAGATAATAGACGGCAAATTCGGTGACCTTGGGAGCAAGGAGAAATACGCAGAGCAGGCGGTAAGGAC GGCCCTTGCTATTCTCACTGAGGGCATCGTCTCCGCCCCGCTGGAAGGAATAGCCGACGTTAAAATCAAGCGCAACGAGT GGGCTGATGGGAGTGAGTACTTAGCCCTCTACTATGCCGGGCCAATAAGAAGCTCTGGTGGAACGGCTCAGGCTTTGAGT GTTCTCGTTGGTGATTACGTGAGAAAAAAGCTCGGCCTCGACAGGTTCAAGCCGAGCGAGAAGCACATTGAGAGAATGGT TGAGGAGATAGACCTCTACCACCGGGCAGTTACGAGGCTCCAGTATCATCCGGAGGCAGACGAAGTAAGACTTGCCATGA AGAACATCCCCATAGAGATAACCGGCGAAGAGACCGACAAGGTTGAAGTTTCCCACCGCGATGTCCCTGGAGTGGAGACC AACCACCTGCGCGGCGGTGCAATCCTCGTTCTTGCTGAAGGTGTCCTCCAGAAGGCCAAGAAGCTCGTCAAGTACATTGA CAAGATGGGCATAGAGGGCTGGGACTGGATAAAGGAGTTCGTCGAGGCGAAGGAGAAAGGCAAGGCTGAGGTCAAGGAAG AGAAGGTCGAGAGCGCCGGTGAAGAAGCTCCCACTGAGAAAGTTGAGGAGAAAATTGAGAAGGGCTTCTACTACGAACTC TACGAGAAGTTCAGGGCCAATATCGCCCCCAACAAGAAGTACACGAAGGAGATAATCGGTGGCAGGCCGCTCTTCGCCGA ACCCTCCACTAACGGTGGCTTCAGGCTTAGATACGGCCGTTCGAGGGTTAGTGGCTTCGCAACCTGGAGCGTCAATCCTG CAACCATGCTCATCCTCGACGAGTTCATAGCCATAGGCACGCAGATGAAGACTGAACGCCCCGGAAAGGGCTGTATCGTA ACCCCCGCAACCACCGTCGAAGGCCCGATAGTCAAGCTCAAGGATGGCTCGGTTATCCGAGTTGACGACTATCAAACCGC CCTCAAAATCCGCGACAAAATCGAGGAGATACTCTACGTCGGCGACGCCCTTGTCAACTTCGGCGACTTTGTTGAGAACA ATCAGACTCTCTTGCCTGCCAACTACGCTGAAGAATGGTGGATTCAGGAGTTTGCTAAAGCTATCGCGGATATCTACGAG GTCGAGCTGAAGCCCTTCGAGGACAACCCACGCGAGGCGGTAGAAGAGGCCGCTGAATACGTCGAGCTTGATCCTGACTT CCTTGAAAGGCTCCTTAAAGACCCTCTCCGCGTCAGGCCGAGCATTGAAGAAGCCATACACATCTCCAAGGTTCTCGACA TTCCCTTCCACCCCCACTACACCCTCTACTGGAACACACTAAAGCCGGAGGAAGTTGAGGATCTCCAGAAGGCCCTTCTC GGCGCTCAAATCGAGTGGGACGAGCACATGAAAAACAAGTTCGCGAGAAAAGTCGTCCTCGACAACGACTCGAAGATAAA GCGCTACCTCGAGCTTTTGGGCCTTCCGCACCGATTGGAGCGGACGGAAGATCGGAAGAAGGTTATCGTAATCGAATATC CCTGGAGTGCCGCATTACTGACTCCCCTCGGCAACCTCGAGTGGGAATTCAAGGCCAAGCCCTTCCACACAGTAATTGAC ATCATCAACAAGGGCAATAGGATTAAGCTCCGCGATCGGGGTATAAGCTGGATCGGCGCGAGAATGGGCAGGCCCGAGAA GGCCAAAGAGAGGAAGATGAAGCCACCCGTTCAGGTGCTCTTCCCGATCGGTCTCGCCGGTGGAAGCTCCCGTGACATAA AGAAGGCCGCCGAAGAAGGCAAGACTACGGAGGTGGAGATAGCCTTCTTCAAGTGTCCAAAATGCGGCCACGTTGGGCCA GAACATATATGTCCGAGCTGCGGAACGAGGAAAGAGCTTCTCTGGCACTGCCCGAAGTGCAGCACTGATTATCTTGAGGG TGAGGCCGATAACTTCGACTTCCGGTGTCCGAAGTGTGGGATCGAGCTCAAGCCCTACGCCAGGCGGAGGATAAAACCCT CTGAGCTTCTCCGCGCCGCTATGGAGAACGTTAAGGTCTACGGCATAGACAAGCTCAAGGGTGTCCAGGGAATGACCTCC GGCTACAAGATGGCCGAGCCTTTAGAGAAAGGCCTCCTCCGGGCCAAGAACGACGTCTACGTATTTAAAGATGGTACAAT CCGTTTCGACGCCACCGATGCCCCGATAACCCACTTCAAGCCGCGGGAGATAGGCGTAAGCGTTGAGAAGCTCCGCGAGC TTGGCTACACCCACGACTTCGAGGGTAAACCGTTAGAGCGGGACGATCAGATAGTCGAGCTCAAGGTGCAGGACGTAATC CTCTCCTACGAGGCTGGCAGATACCTCCTCAAAGTCGCACGCTTCATAGATGACCTGCTTGAGAAGTTCTACGGACTGCC AAGGTTCTACAACGCCGAGAAGATGGAGGATTTGATAGGCCACCTCGTCATCGGTCTTGCTCCCCACACGTCTGCCGGAA TTATTGGCAGGATAATAGGCTTTTCCGACGTGCTGGTTGGTTATGCCCACCCGTATTATCATGCCGCGAAGAGAAGGAAC TGCTTCCCTGGTGACACGAGGATACTCGTCCAGATTGACGGAATGCCAATGAGGATAACGCTTAGAGAGCTCTACGAGCT CTTCGAGGATGAACACTACGAGAACATGGTTTACGTCAGAAGGAAGCCGAAGGTTGATGTCAAAGTTTACTCCTTCGACC CAGAGAGCGGAAAGGTCGTTCTGACAGATATCGAGGATGTCATCAAAGCTCCAAGCACTGACCACACCATTCGCTTCGAG CTTGAGTTGGGAAGGGCCTTTGAGACAACCGTTGACCATCCGGTTCTTGTCTACGAAAACGGGAAATTCATAGAGAAGAG GGCATTTGAGGTCAAGGAGGGCGACAGGATACTCGTTCCCAAGCTAGAGCTTCCAGAGGCGGACGTTGAGTCCATTGACT TGCTTGAGGAATTCTCTCGCGAGGAGTTTAAAGAGCTGTGGGACAGGATAATGGTTCGTGGTCTCTCTGGATGGTTTATG TCAATAGGTGCTGGAGTGAAGGAAGATTACCTCCGCAGGGACTCCATGCCTCTGGATGTTCTACTCAATGTTCTGAAGGA GAAGGGACTCTCGATTAAAGACGTTCCAGACTGCTACTTAGGCTTCAAGCGGGACAAGGTTAGGATAAAGCGCTTCGTTC CGGTTGGACCATTCCTCCGCGTCCTTGGCTACTACTTGGCAGAAGGCTATGCCCGCAAGAGCAATAGCGTTTACCAGATA GGCTTCTCGATAGCGGACGAAGAGGCCAGGGAAGACCTCAAGAAAGCTTTAAGGGAGGCCTTCGGCGAGGGCTTTGGAAT TCATGAGAGGGGCGAGAAGGTTACTGTCGGCTCACGCATCCTGTACCTCCTCTTCACGGAGGTGCTGAAAGCTGGAAGAA ACGCACACACGAAGAGAGTTCCTGCCTTTGTTTTCAAGCTAACTCCTGAACTTGTGGCCGAGATGCTGAGGGCCTACTTT GAGGGAGATGGGAGCGCTCTCAAAACCGTGCCAAGGGTGGTCGTCTACAGCGTTAACAAGGTTCTGCTTGAGGATATCGA AACGTTACTCCTCGCCAAATTTGGAATCCGTGGTTACTACACCCTTGACAAGAACGCCAATCGTGGCAATGCCCGCGGCA GGCTCTACCATGTTGAACGTGGAGGTGAGCCTCCGGTTTCGAAAGTCTATGCCTTGAACATAGCCGGTGAGTACTATGAC AGATTCTTTGAGAAAATAGGCTTTGTGAGTGACCGGAAGAATTCTGTGTATTCACTGCACTCTGATAAAAAGAGGCATCA TGACAAATACCTCTCCGAAAATGGCTGGCTCGTGAAAGTTAGGCGTGTTGAATACGTCAGGCCCAGAGAGGAATTCGTCT TCTCACTAAACGCCAAAGATTACCACAATGTTCTGATTAATGAAAATTTGGTAACGCACCAATGCGACGGCGACGAAGAT GCAGTAATGCTCCTCCTCGATGCCCTCCTGAACTTCAGCAAGTATTACCTCCCTGAGAAGCGCGGTGGGAAGATGGACGC GCCGCTGGTTGTTACCACCCGCCTTGACCCGCGCGAGGTGGACAGTGAGGTCCATAACATGGACGTTGTCAGGTATTATC CGCTCGAGTTCTACGCGGCGACTTACGAGATGAAATCGCCCAAGGAGATAAAGTTCATCGAGCGCGTTGAGGACCGCCTA GGAAAGCCCGAGATGTACGAGGGCATAAAGTTCACCCACGACACTGATGACATCGGCCTCGGCCCGAAGATGAGCCTGTA CAAACAGCTCGGCGACATGGAGGAGAAGGTCGCCCGTCAGCTGGCTTTGGCGGAGCGTATTCGTGCGGTTGACGAGCACC ACGTTGCCGAGACGATAATCAACTCCCACCTCGTTCCAGACCTGAGGGGCAACCTCAGGAGCTTCACCAGACAGGAGTTC CGCTGCGTCAAGTGCAACACGAAGTACCGGAGACCACCGCTCACCGGCAAGTGCCCCAAGTGCGGCGGCAAAATCGTCCT GACCGTCAGTAAAGGTGCAATTGAGAAGTACCTGCCGACGGCCAAGATGTTGGTTACGCGGTACAACGTGCTGGACTACA CGAGGCAGAGGATATGCATGACAGAAAAGGACATCAAGAGCCTCTTTGAGAACGTCTTCCCGGAGAGGCAGAGGACTTTG ATGGGCTTCTCCGCTGACATCTGCGAGAAGATGATAAAGGCCAGAACCGGCAAGTCCAACGGCAGGAACGGCTACCTTGA CGAGCTTAAGGCCAACGGGAAGCTCAAGAAAAAGGCTGAGAAGTCAAAAGCCGAGACGAAAGCTGAAAAGAAGTCTAAAA AAGCTGAGAAAAAGACCAAGCCTTCTGAAGGTCTTGAGAATGACATTAGGAAGGAGAAGTCCAAGATGAAGAAGCCCAAG AAGGGCATAAGCCTGGACGAGTTTTTTGGTTCCTAG
Upstream 100 bases:
>100_bases ACATCGTTCCTACCCCTGCAAGGGTTCCAATAATCGATGTGGAAACCGCCCGTTTGAGGGCCGTTGTGCACTTTGACCAG TACTGTGAGGGTGTTTGACA
Downstream 100 bases:
>100_bases CGTTAATCATATATATTATTATGTCGCCCTTTTTTTTGATGTACGACCAGTTCAAACTGCTCCCCAGCGTCGCCTACCTC CGCGTGCAGAGGCAGGTCTT
Product: DNA polymerase II large subunit
Products: NA
Alternate protein names: Pol II; Pko pol II intein [H]
Number of amino acids: Translated: 1771; Mature: 1770
Protein sequence:
>1771_residues MAELYSEKMKAYFESLQREIDRAYEIARKARAQGKDPSTDVEVPQATDMAGRVESLVGPPGVAERIRALVKEYGKELAAL KVVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGIVSAPLEGIADVKIKRNEWADGSEYLALYYAGPIRSSGGTAQALS VLVGDYVRKKLGLDRFKPSEKHIERMVEEIDLYHRAVTRLQYHPEADEVRLAMKNIPIEITGEETDKVEVSHRDVPGVET NHLRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWDWIKEFVEAKEKGKAEVKEEKVESAGEEAPTEKVEEKIEKGFYYEL YEKFRANIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGRSRVSGFATWSVNPATMLILDEFIAIGTQMKTERPGKGCIV TPATTVEGPIVKLKDGSVIRVDDYQTALKIRDKIEEILYVGDALVNFGDFVENNQTLLPANYAEEWWIQEFAKAIADIYE VELKPFEDNPREAVEEAAEYVELDPDFLERLLKDPLRVRPSIEEAIHISKVLDIPFHPHYTLYWNTLKPEEVEDLQKALL GAQIEWDEHMKNKFARKVVLDNDSKIKRYLELLGLPHRLERTEDRKKVIVIEYPWSAALLTPLGNLEWEFKAKPFHTVID IINKGNRIKLRDRGISWIGARMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKTTEVEIAFFKCPKCGHVGP EHICPSCGTRKELLWHCPKCSTDYLEGEADNFDFRCPKCGIELKPYARRRIKPSELLRAAMENVKVYGIDKLKGVQGMTS GYKMAEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFKPREIGVSVEKLRELGYTHDFEGKPLERDDQIVELKVQDVI LSYEAGRYLLKVARFIDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIIGRIIGFSDVLVGYAHPYYHAAKRRN CFPGDTRILVQIDGMPMRITLRELYELFEDEHYENMVYVRRKPKVDVKVYSFDPESGKVVLTDIEDVIKAPSTDHTIRFE LELGRAFETTVDHPVLVYENGKFIEKRAFEVKEGDRILVPKLELPEADVESIDLLEEFSREEFKELWDRIMVRGLSGWFM SIGAGVKEDYLRRDSMPLDVLLNVLKEKGLSIKDVPDCYLGFKRDKVRIKRFVPVGPFLRVLGYYLAEGYARKSNSVYQI GFSIADEEAREDLKKALREAFGEGFGIHERGEKVTVGSRILYLLFTEVLKAGRNAHTKRVPAFVFKLTPELVAEMLRAYF EGDGSALKTVPRVVVYSVNKVLLEDIETLLLAKFGIRGYYTLDKNANRGNARGRLYHVERGGEPPVSKVYALNIAGEYYD RFFEKIGFVSDRKNSVYSLHSDKKRHHDKYLSENGWLVKVRRVEYVRPREEFVFSLNAKDYHNVLINENLVTHQCDGDED AVMLLLDALLNFSKYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYAATYEMKSPKEIKFIERVEDRL GKPEMYEGIKFTHDTDDIGLGPKMSLYKQLGDMEEKVARQLALAERIRAVDEHHVAETIINSHLVPDLRGNLRSFTRQEF RCVKCNTKYRRPPLTGKCPKCGGKIVLTVSKGAIEKYLPTAKMLVTRYNVLDYTRQRICMTEKDIKSLFENVFPERQRTL MGFSADICEKMIKARTGKSNGRNGYLDELKANGKLKKKAEKSKAETKAEKKSKKAEKKTKPSEGLENDIRKEKSKMKKPK KGISLDEFFGS
Sequences:
>Translated_1771_residues MAELYSEKMKAYFESLQREIDRAYEIARKARAQGKDPSTDVEVPQATDMAGRVESLVGPPGVAERIRALVKEYGKELAAL KVVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGIVSAPLEGIADVKIKRNEWADGSEYLALYYAGPIRSSGGTAQALS VLVGDYVRKKLGLDRFKPSEKHIERMVEEIDLYHRAVTRLQYHPEADEVRLAMKNIPIEITGEETDKVEVSHRDVPGVET NHLRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWDWIKEFVEAKEKGKAEVKEEKVESAGEEAPTEKVEEKIEKGFYYEL YEKFRANIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGRSRVSGFATWSVNPATMLILDEFIAIGTQMKTERPGKGCIV TPATTVEGPIVKLKDGSVIRVDDYQTALKIRDKIEEILYVGDALVNFGDFVENNQTLLPANYAEEWWIQEFAKAIADIYE VELKPFEDNPREAVEEAAEYVELDPDFLERLLKDPLRVRPSIEEAIHISKVLDIPFHPHYTLYWNTLKPEEVEDLQKALL GAQIEWDEHMKNKFARKVVLDNDSKIKRYLELLGLPHRLERTEDRKKVIVIEYPWSAALLTPLGNLEWEFKAKPFHTVID IINKGNRIKLRDRGISWIGARMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKTTEVEIAFFKCPKCGHVGP EHICPSCGTRKELLWHCPKCSTDYLEGEADNFDFRCPKCGIELKPYARRRIKPSELLRAAMENVKVYGIDKLKGVQGMTS GYKMAEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFKPREIGVSVEKLRELGYTHDFEGKPLERDDQIVELKVQDVI LSYEAGRYLLKVARFIDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIIGRIIGFSDVLVGYAHPYYHAAKRRN CFPGDTRILVQIDGMPMRITLRELYELFEDEHYENMVYVRRKPKVDVKVYSFDPESGKVVLTDIEDVIKAPSTDHTIRFE LELGRAFETTVDHPVLVYENGKFIEKRAFEVKEGDRILVPKLELPEADVESIDLLEEFSREEFKELWDRIMVRGLSGWFM SIGAGVKEDYLRRDSMPLDVLLNVLKEKGLSIKDVPDCYLGFKRDKVRIKRFVPVGPFLRVLGYYLAEGYARKSNSVYQI GFSIADEEAREDLKKALREAFGEGFGIHERGEKVTVGSRILYLLFTEVLKAGRNAHTKRVPAFVFKLTPELVAEMLRAYF EGDGSALKTVPRVVVYSVNKVLLEDIETLLLAKFGIRGYYTLDKNANRGNARGRLYHVERGGEPPVSKVYALNIAGEYYD RFFEKIGFVSDRKNSVYSLHSDKKRHHDKYLSENGWLVKVRRVEYVRPREEFVFSLNAKDYHNVLINENLVTHQCDGDED AVMLLLDALLNFSKYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYAATYEMKSPKEIKFIERVEDRL GKPEMYEGIKFTHDTDDIGLGPKMSLYKQLGDMEEKVARQLALAERIRAVDEHHVAETIINSHLVPDLRGNLRSFTRQEF RCVKCNTKYRRPPLTGKCPKCGGKIVLTVSKGAIEKYLPTAKMLVTRYNVLDYTRQRICMTEKDIKSLFENVFPERQRTL MGFSADICEKMIKARTGKSNGRNGYLDELKANGKLKKKAEKSKAETKAEKKSKKAEKKTKPSEGLENDIRKEKSKMKKPK KGISLDEFFGS >Mature_1770_residues AELYSEKMKAYFESLQREIDRAYEIARKARAQGKDPSTDVEVPQATDMAGRVESLVGPPGVAERIRALVKEYGKELAALK VVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGIVSAPLEGIADVKIKRNEWADGSEYLALYYAGPIRSSGGTAQALSV LVGDYVRKKLGLDRFKPSEKHIERMVEEIDLYHRAVTRLQYHPEADEVRLAMKNIPIEITGEETDKVEVSHRDVPGVETN HLRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWDWIKEFVEAKEKGKAEVKEEKVESAGEEAPTEKVEEKIEKGFYYELY EKFRANIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGRSRVSGFATWSVNPATMLILDEFIAIGTQMKTERPGKGCIVT PATTVEGPIVKLKDGSVIRVDDYQTALKIRDKIEEILYVGDALVNFGDFVENNQTLLPANYAEEWWIQEFAKAIADIYEV ELKPFEDNPREAVEEAAEYVELDPDFLERLLKDPLRVRPSIEEAIHISKVLDIPFHPHYTLYWNTLKPEEVEDLQKALLG AQIEWDEHMKNKFARKVVLDNDSKIKRYLELLGLPHRLERTEDRKKVIVIEYPWSAALLTPLGNLEWEFKAKPFHTVIDI INKGNRIKLRDRGISWIGARMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKTTEVEIAFFKCPKCGHVGPE HICPSCGTRKELLWHCPKCSTDYLEGEADNFDFRCPKCGIELKPYARRRIKPSELLRAAMENVKVYGIDKLKGVQGMTSG YKMAEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFKPREIGVSVEKLRELGYTHDFEGKPLERDDQIVELKVQDVIL SYEAGRYLLKVARFIDDLLEKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIIGRIIGFSDVLVGYAHPYYHAAKRRNC FPGDTRILVQIDGMPMRITLRELYELFEDEHYENMVYVRRKPKVDVKVYSFDPESGKVVLTDIEDVIKAPSTDHTIRFEL ELGRAFETTVDHPVLVYENGKFIEKRAFEVKEGDRILVPKLELPEADVESIDLLEEFSREEFKELWDRIMVRGLSGWFMS IGAGVKEDYLRRDSMPLDVLLNVLKEKGLSIKDVPDCYLGFKRDKVRIKRFVPVGPFLRVLGYYLAEGYARKSNSVYQIG FSIADEEAREDLKKALREAFGEGFGIHERGEKVTVGSRILYLLFTEVLKAGRNAHTKRVPAFVFKLTPELVAEMLRAYFE GDGSALKTVPRVVVYSVNKVLLEDIETLLLAKFGIRGYYTLDKNANRGNARGRLYHVERGGEPPVSKVYALNIAGEYYDR FFEKIGFVSDRKNSVYSLHSDKKRHHDKYLSENGWLVKVRRVEYVRPREEFVFSLNAKDYHNVLINENLVTHQCDGDEDA VMLLLDALLNFSKYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYAATYEMKSPKEIKFIERVEDRLG KPEMYEGIKFTHDTDDIGLGPKMSLYKQLGDMEEKVARQLALAERIRAVDEHHVAETIINSHLVPDLRGNLRSFTRQEFR CVKCNTKYRRPPLTGKCPKCGGKIVLTVSKGAIEKYLPTAKMLVTRYNVLDYTRQRICMTEKDIKSLFENVFPERQRTLM GFSADICEKMIKARTGKSNGRNGYLDELKANGKLKKKAEKSKAETKAEKKSKKAEKKTKPSEGLENDIRKEKSKMKKPKK GISLDEFFGS
Specific function: Possesses two activities:a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase [H]
COG id: COG1933
COG function: function code L; Archaeal DNA polymerase II, large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 DOD-type homing endonuclease domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003587 - InterPro: IPR006142 - InterPro: IPR004042 - InterPro: IPR006141 - InterPro: IPR004475 - InterPro: IPR016033 [H]
Pfam domain/function: PF03833 PolC_DP2 [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 202238; Mature: 202107
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: PS50817 INTEIN_N_TER ; PS50818 INTEIN_C_TER ; PS50819 INTEIN_ENDONUCLEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAELYSEKMKAYFESLQREIDRAYEIARKARAQGKDPSTDVEVPQATDMAGRVESLVGPP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC GVAERIRALVKEYGKELAALKVVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGIVSAP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC LEGIADVKIKRNEWADGSEYLALYYAGPIRSSGGTAQALSVLVGDYVRKKLGLDRFKPSE CCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH KHIERMVEEIDLYHRAVTRLQYHPEADEVRLAMKNIPIEITGEETDKVEVSHRDVPGVET HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCC NHLRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWDWIKEFVEAKEKGKAEVKEEKVESAG CCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC EEAPTEKVEEKIEKGFYYELYEKFRANIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGR CCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEEECC SRVSGFATWSVNPATMLILDEFIAIGTQMKTERPGKGCIVTPATTVEGPIVKLKDGSVIR HHHCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEE VDDYQTALKIRDKIEEILYVGDALVNFGDFVENNQTLLPANYAEEWWIQEFAKAIADIYE ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHH VELKPFEDNPREAVEEAAEYVELDPDFLERLLKDPLRVRPSIEEAIHISKVLDIPFHPHY HCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHCCCCCCCE TLYWNTLKPEEVEDLQKALLGAQIEWDEHMKNKFARKVVLDNDSKIKRYLELLGLPHRLE EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCHHHH RTEDRKKVIVIEYPWSAALLTPLGNLEWEFKAKPFHTVIDIINKGNRIKLRDRGISWIGA CCCCCCEEEEEECCCCHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHH RMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKTTEVEIAFFKCPKCGHVGP HCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCH EHICPSCGTRKELLWHCPKCSTDYLEGEADNFDFRCPKCGIELKPYARRRIKPSELLRAA HHCCCCCCCCHHHHEECCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH MENVKVYGIDKLKGVQGMTSGYKMAEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFK HHCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCC PREIGVSVEKLRELGYTHDFEGKPLERDDQIVELKVQDVILSYEAGRYLLKVARFIDDLL CHHHCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH EKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIIGRIIGFSDVLVGYAHPYYHAAKRRN HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCC CFPGDTRILVQIDGMPMRITLRELYELFEDEHYENMVYVRRKPKVDVKVYSFDPESGKVV CCCCCCEEEEEECCCCEEEEHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCEE LTDIEDVIKAPSTDHTIRFELELGRAFETTVDHPVLVYENGKFIEKRAFEVKEGDRILVP EEEHHHHHCCCCCCCEEEEEEEECCHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEEC KLELPEADVESIDLLEEFSREEFKELWDRIMVRGLSGWFMSIGAGVKEDYLRRDSMPLDV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHH LLNVLKEKGLSIKDVPDCYLGFKRDKVRIKRFVPVGPFLRVLGYYLAEGYARKSNSVYQI HHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEE GFSIADEEAREDLKKALREAFGEGFGIHERGEKVTVGSRILYLLFTEVLKAGRNAHTKRV ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHC PAFVFKLTPELVAEMLRAYFEGDGSALKTVPRVVVYSVNKVLLEDIETLLLAKFGIRGYY CHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE TLDKNANRGNARGRLYHVERGGEPPVSKVYALNIAGEYYDRFFEKIGFVSDRKNSVYSLH EECCCCCCCCCCCEEEEECCCCCCCCHHEEEEEECHHHHHHHHHHHCCCCCCCCCEEECH SDKKRHHDKYLSENGWLVKVRRVEYVRPREEFVFSLNAKDYHNVLINENLVTHQCDGDED HHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHEEEECCCCCHHHEEECCCEEEECCCCCHH AVMLLLDALLNFSKYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEECHHHEEE TYEMKSPKEIKFIERVEDRLGKPEMYEGIKFTHDTDDIGLGPKMSLYKQLGDMEEKVARQ EECCCCCHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCCCCCCHHHHHHHCCHHHHHHHH LALAERIRAVDEHHVAETIINSHLVPDLRGNLRSFTRQEFRCVKCNTKYRRPPLTGKCPK HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCC CGGKIVLTVSKGAIEKYLPTAKMLVTRYNVLDYTRQRICMTEKDIKSLFENVFPERQRTL CCCEEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHH MGFSADICEKMIKARTGKSNGRNGYLDELKANGKLKKKAEKSKAETKAEKKSKKAEKKTK HCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC PSEGLENDIRKEKSKMKKPKKGISLDEFFGS CCCCHHHHHHHHHHHHCCCCCCCCHHHHHCC >Mature Secondary Structure AELYSEKMKAYFESLQREIDRAYEIARKARAQGKDPSTDVEVPQATDMAGRVESLVGPP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC GVAERIRALVKEYGKELAALKVVDEIIDGKFGDLGSKEKYAEQAVRTALAILTEGIVSAP CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC LEGIADVKIKRNEWADGSEYLALYYAGPIRSSGGTAQALSVLVGDYVRKKLGLDRFKPSE CCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH KHIERMVEEIDLYHRAVTRLQYHPEADEVRLAMKNIPIEITGEETDKVEVSHRDVPGVET HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCC NHLRGGAILVLAEGVLQKAKKLVKYIDKMGIEGWDWIKEFVEAKEKGKAEVKEEKVESAG CCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC EEAPTEKVEEKIEKGFYYELYEKFRANIAPNKKYTKEIIGGRPLFAEPSTNGGFRLRYGR CCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEECCCCCCCEEEEECC SRVSGFATWSVNPATMLILDEFIAIGTQMKTERPGKGCIVTPATTVEGPIVKLKDGSVIR HHHCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEECCCCEEE VDDYQTALKIRDKIEEILYVGDALVNFGDFVENNQTLLPANYAEEWWIQEFAKAIADIYE ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHH VELKPFEDNPREAVEEAAEYVELDPDFLERLLKDPLRVRPSIEEAIHISKVLDIPFHPHY HCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHCCCCHHHHHHHHHHHCCCCCCCE TLYWNTLKPEEVEDLQKALLGAQIEWDEHMKNKFARKVVLDNDSKIKRYLELLGLPHRLE EEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCHHHH RTEDRKKVIVIEYPWSAALLTPLGNLEWEFKAKPFHTVIDIINKGNRIKLRDRGISWIGA CCCCCCEEEEEECCCCHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEEEEECCCCHHHHH RMGRPEKAKERKMKPPVQVLFPIGLAGGSSRDIKKAAEEGKTTEVEIAFFKCPKCGHVGP HCCCCCHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCCCCH EHICPSCGTRKELLWHCPKCSTDYLEGEADNFDFRCPKCGIELKPYARRRIKPSELLRAA HHCCCCCCCCHHHHEECCCCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHH MENVKVYGIDKLKGVQGMTSGYKMAEPLEKGLLRAKNDVYVFKDGTIRFDATDAPITHFK HHCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCC PREIGVSVEKLRELGYTHDFEGKPLERDDQIVELKVQDVILSYEAGRYLLKVARFIDDLL CHHHCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH EKFYGLPRFYNAEKMEDLIGHLVIGLAPHTSAGIIGRIIGFSDVLVGYAHPYYHAAKRRN HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCC CFPGDTRILVQIDGMPMRITLRELYELFEDEHYENMVYVRRKPKVDVKVYSFDPESGKVV CCCCCCEEEEEECCCCEEEEHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCCCCCEE LTDIEDVIKAPSTDHTIRFELELGRAFETTVDHPVLVYENGKFIEKRAFEVKEGDRILVP EEEHHHHHCCCCCCCEEEEEEEECCHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEEC KLELPEADVESIDLLEEFSREEFKELWDRIMVRGLSGWFMSIGAGVKEDYLRRDSMPLDV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHH LLNVLKEKGLSIKDVPDCYLGFKRDKVRIKRFVPVGPFLRVLGYYLAEGYARKSNSVYQI HHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEE GFSIADEEAREDLKKALREAFGEGFGIHERGEKVTVGSRILYLLFTEVLKAGRNAHTKRV ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCHHHC PAFVFKLTPELVAEMLRAYFEGDGSALKTVPRVVVYSVNKVLLEDIETLLLAKFGIRGYY CHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE TLDKNANRGNARGRLYHVERGGEPPVSKVYALNIAGEYYDRFFEKIGFVSDRKNSVYSLH EECCCCCCCCCCCEEEEECCCCCCCCHHEEEEEECHHHHHHHHHHHCCCCCCCCCEEECH SDKKRHHDKYLSENGWLVKVRRVEYVRPREEFVFSLNAKDYHNVLINENLVTHQCDGDED HHHHHHHHHHHCCCCCEEEEEEEHHCCCHHHEEEECCCCCHHHEEECCCEEEECCCCCHH AVMLLLDALLNFSKYYLPEKRGGKMDAPLVVTTRLDPREVDSEVHNMDVVRYYPLEFYAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEECHHHEEE TYEMKSPKEIKFIERVEDRLGKPEMYEGIKFTHDTDDIGLGPKMSLYKQLGDMEEKVARQ EECCCCCHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCCCCCCHHHHHHHCCHHHHHHHH LALAERIRAVDEHHVAETIINSHLVPDLRGNLRSFTRQEFRCVKCNTKYRRPPLTGKCPK HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCC CGGKIVLTVSKGAIEKYLPTAKMLVTRYNVLDYTRQRICMTEKDIKSLFENVFPERQRTL CCCEEEEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHH MGFSADICEKMIKARTGKSNGRNGYLDELKANGKLKKKAEKSKAETKAEKKSKKAEKKTK HCCCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC PSEGLENDIRKEKSKMKKPKKGISLDEFFGS CCCCHHHHHHHHHHHHCCCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA