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The map label for this gene is deoC [H]

Identifier: 212224759

GI number: 212224759

Start: 1469112

End: 1469795

Strand: Reverse

Name: deoC [H]

Synonym: TON_1608

Alternate gene names: 212224759

Gene position: 1469795-1469112 (Counterclockwise)

Preceding gene: 212224760

Following gene: 212224758

Centisome position: 79.55

GC content: 53.51

Gene sequence:

>684_bases
ATGGGTATGAGCGATCACATCGATGTCGCCAGGTATATCGACCATACGAATCTCAAACCTTACGCTACCGCTGATGACAT
AATCAAGCTCTGTGATGAGGCCAAGCGCTACAACTTCTACGCCGTCTGCGTCAATCCCTACCGCGTCAAACTCGCCAAGG
AGCAGCTCAAAGGCTCGAACGTAAAAGTGGCCACTGTCATAGGATTTCCACTCGGTGCAACTCCCACAGAAGTTAAGGTC
TTCGAGGCGAAGAAAGCACTTGAAGACGGCGCTGATGAGCTGGATATGGTGATAAACATCGGCGCGCTGAAGGACGGCGA
TTATGAGTACGTTAGGCGAGACATAGAGGAGGTCGTTAAGGTCGCCCATGAAAAGGGGGCAATAGTCAAGGTCATTATCG
AGACCTGCTATCTAACGGAGGAGGAGAAAATCAAGGCCTGCGAGCTGGCTAAGGAGGCTGGAGCGGACTTTGTGAAGACC
TCGACCGGCTTCGGAACCGGTGGCGCAACAGTCGAGGACGTCAGGCTGATGAGAAAGGTCGTTGGTCCAGACATGGGTGT
CAAAGCATCTGGAGGAGTCAGGACATACGAGCAGGCAATGGCTATGATAGAGGCTGGCGCGACGAGGATAGGGACCTCGA
GTGGCGTGAAGATTGTGGAGGGGGCGATGGATGCGGGAGATTAA

Upstream 100 bases:

>100_bases
AAAATTGTTAAAAATCCAAAGGGGGCCTGCAGATTTTCTGATTGAGTGCCCATTTTTGAGGGAAAATTCTAAATACATTT
AGATGGAGTAGTAACCGGTG

Downstream 100 bases:

>100_bases
GGACATCCTTGATCGGGCCATTCAGGAGCTCAGGGTGGAGGGTCTTGAGCCGGACATCCTCCTCGTTGGTCCAGGTTTCT
TGGAGTACACCATCCAGGTG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MGMSDHIDVARYIDHTNLKPYATADDIIKLCDEAKRYNFYAVCVNPYRVKLAKEQLKGSNVKVATVIGFPLGATPTEVKV
FEAKKALEDGADELDMVINIGALKDGDYEYVRRDIEEVVKVAHEKGAIVKVIIETCYLTEEEKIKACELAKEAGADFVKT
STGFGTGGATVEDVRLMRKVVGPDMGVKASGGVRTYEQAMAMIEAGATRIGTSSGVKIVEGAMDAGD

Sequences:

>Translated_227_residues
MGMSDHIDVARYIDHTNLKPYATADDIIKLCDEAKRYNFYAVCVNPYRVKLAKEQLKGSNVKVATVIGFPLGATPTEVKV
FEAKKALEDGADELDMVINIGALKDGDYEYVRRDIEEVVKVAHEKGAIVKVIIETCYLTEEEKIKACELAKEAGADFVKT
STGFGTGGATVEDVRLMRKVVGPDMGVKASGGVRTYEQAMAMIEAGATRIGTSSGVKIVEGAMDAGD
>Mature_226_residues
GMSDHIDVARYIDHTNLKPYATADDIIKLCDEAKRYNFYAVCVNPYRVKLAKEQLKGSNVKVATVIGFPLGATPTEVKVF
EAKKALEDGADELDMVINIGALKDGDYEYVRRDIEEVVKVAHEKGAIVKVIIETCYLTEEEKIKACELAKEAGADFVKTS
TGFGTGGATVEDVRLMRKVVGPDMGVKASGGVRTYEQAMAMIEAGATRIGTSSGVKIVEGAMDAGD

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=220, Percent_Identity=34.5454545454545, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1790841, Length=201, Percent_Identity=36.318407960199, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17533015, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI19922098, Length=193, Percent_Identity=32.1243523316062, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 24506; Mature: 24375

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMSDHIDVARYIDHTNLKPYATADDIIKLCDEAKRYNFYAVCVNPYRVKLAKEQLKGSN
CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHCCCC
VKVATVIGFPLGATPTEVKVFEAKKALEDGADELDMVINIGALKDGDYEYVRRDIEEVVK
EEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEHEEEECCCCCCCHHHHHHHHHHHHH
VAHEKGAIVKVIIETCYLTEEEKIKACELAKEAGADFVKTSTGFGTGGATVEDVRLMRKV
HHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHH
VGPDMGVKASGGVRTYEQAMAMIEAGATRIGTSSGVKIVEGAMDAGD
HCCCCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
GMSDHIDVARYIDHTNLKPYATADDIIKLCDEAKRYNFYAVCVNPYRVKLAKEQLKGSN
CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHCCCC
VKVATVIGFPLGATPTEVKVFEAKKALEDGADELDMVINIGALKDGDYEYVRRDIEEVVK
EEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEHEEEECCCCCCCHHHHHHHHHHHHH
VAHEKGAIVKVIIETCYLTEEEKIKACELAKEAGADFVKTSTGFGTGGATVEDVRLMRKV
HHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHH
VGPDMGVKASGGVRTYEQAMAMIEAGATRIGTSSGVKIVEGAMDAGD
HCCCCCCCCCCCCHHHHHHHHHHHHCCHHCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA