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The map label for this gene is lrpA [H]

Identifier: 212224661

GI number: 212224661

Start: 1385875

End: 1386300

Strand: Reverse

Name: lrpA [H]

Synonym: TON_1510

Alternate gene names: 212224661

Gene position: 1386300-1385875 (Counterclockwise)

Preceding gene: 212224662

Following gene: 212224659

Centisome position: 75.03

GC content: 51.64

Gene sequence:

>426_bases
ATGCTTGATGAAAGGGACAGGATTATAATCGATATGCTCACCAGAGATGCCCGCACTCCGTTCACGGAGATAGCGAAGGT
ATTGGGCATCAGCGAGACGGCCGTCAGGAAAAGGGTCAAGGCTCTCGAGGAGGCTGGGGTTATACGGCAGTACACCATCG
TGGTTGATCCGTCAAAGCTCGGTTACAACCTTGTCAGCCTTACTGGGGTTGACACACTCCCTGAGAAGATATTCGAGGTC
GCAAACAAGCTCAAGGAGTTCGAGTTCGTGAGGAACGTCTACCTCACGAGCGGTGACCACATGATAATGGCCGAGATCTG
GGCCAAGGACGGAGAGGACCTTTCAGACATAATCTCCAACAAGATAGGTAAACTTAACGGCGTCACCAAGGTTTGCCCTG
CCATAATCCTCGAGAAGCTGAAGTAG

Upstream 100 bases:

>100_bases
AGTGGTTGTCAAACTTAAACACAAGGTTTGGCTTTAGAACCGACAAGTTCAAAAACTTAATATACTTGGTCTGCATAACA
TAAGATAGAGGTGATGAAAA

Downstream 100 bases:

>100_bases
AGCCTTTAAGAAAGGCTCGCGAAAATTTTCTTTCTCATTTTTGGTGTCGTAGATTTAGAGCGTGCACTCTTAGAACTTCC
TGGAAGTAGGGGTTAATTTT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MLDERDRIIIDMLTRDARTPFTEIAKVLGISETAVRKRVKALEEAGVIRQYTIVVDPSKLGYNLVSLTGVDTLPEKIFEV
ANKLKEFEFVRNVYLTSGDHMIMAEIWAKDGEDLSDIISNKIGKLNGVTKVCPAIILEKLK

Sequences:

>Translated_141_residues
MLDERDRIIIDMLTRDARTPFTEIAKVLGISETAVRKRVKALEEAGVIRQYTIVVDPSKLGYNLVSLTGVDTLPEKIFEV
ANKLKEFEFVRNVYLTSGDHMIMAEIWAKDGEDLSDIISNKIGKLNGVTKVCPAIILEKLK
>Mature_141_residues
MLDERDRIIIDMLTRDARTPFTEIAKVLGISETAVRKRVKALEEAGVIRQYTIVVDPSKLGYNLVSLTGVDTLPEKIFEV
ANKLKEFEFVRNVYLTSGDHMIMAEIWAKDGEDLSDIISNKIGKLNGVTKVCPAIILEKLK

Specific function: Negatively regulates its own transcription [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=139, Percent_Identity=28.7769784172662, Blast_Score=69, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15850; Mature: 15850

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDERDRIIIDMLTRDARTPFTEIAKVLGISETAVRKRVKALEEAGVIRQYTIVVDPSKL
CCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHH
GYNLVSLTGVDTLPEKIFEVANKLKEFEFVRNVYLTSGDHMIMAEIWAKDGEDLSDIISN
CCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHH
KIGKLNGVTKVCPAIILEKLK
HHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLDERDRIIIDMLTRDARTPFTEIAKVLGISETAVRKRVKALEEAGVIRQYTIVVDPSKL
CCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCHHH
GYNLVSLTGVDTLPEKIFEVANKLKEFEFVRNVYLTSGDHMIMAEIWAKDGEDLSDIISN
CCCHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCCCCHHHHHHH
KIGKLNGVTKVCPAIILEKLK
HHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]