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The map label for this gene is ygeA [C]

Identifier: 212223817

GI number: 212223817

Start: 621078

End: 621767

Strand: Reverse

Name: ygeA [C]

Synonym: TON_0669

Alternate gene names: 212223817

Gene position: 621767-621078 (Counterclockwise)

Preceding gene: 212223818

Following gene: 212223814

Centisome position: 33.65

GC content: 53.48

Gene sequence:

>690_bases
ATGACCGAGAGGGTCATCGGAATACTCGGCGGCATGGGACCGTTAGCCACTGCAGAACTCTTCAGAAGGATAATCGAGAA
GACACCAGCAAAGAGGGATCAGGATCACCCGAGGATAATCATCTACAACAACCCGAAGATACCCGACAGGACGGCGTTCA
TCCTCGGGGAGGGCGAAGATCCGAGGCCAGAGCTTGTAGAGAGCGCCAGAAAGCTCGAGAGCTGGGGGGCGGACTTTATA
ATAATGCCCTGCAATACCGCCCACTTCTTCGCGGAAAGCATTCAGAGGAAGATAAGCATACCACTCGTCAGTATGGTGGA
AGAAACCGCGAAGAGAATAGAGGAGATGGGACTTAAGAAGGTCGGTCTTTTGGCCACCGATGGAACCATTAAGGGCCTTG
TTTATCACCGTGCCCTCCTTGACAGGGGGATTCAGATAGCAGTGCCCATCAAAAAGGATCAGGAGCTCGTCATGAAGGGT
ATTTACGAGGGGGTTAAAGCTGGAAACCTCGAGCTGGGCAGGGAACTTCTCCTCCGGGTTGCCAGGAGGCTGGAAAAGAG
GAGCGAAGGCATAATAGCCGGTTGCACGGAGGTCAGTGTTGCGCTAAAGCCCGAGGATTTGAGCGTCCCTCTTATTGACC
CGCTCGATGTGATAGCGGAAATGGCTGTGAGGCTGGCCCTCGGTTTATAA

Upstream 100 bases:

>100_bases
CCGTCCACTGGGTCATCAACGAGCGCGACGAGCCCTTCAGGCTCTTCGTGGTCAAGCTGAATTACTACGGCGACGATTCC
GTCTGGCTGGAGGAGTAATG

Downstream 100 bases:

>100_bases
CCACCCCTTTCTTTTGAAGTAGTGGAGCATCCCAACGGCAGTGAGCAGCATGCCGGATATTGTCATGAAGTAGCCGTAGC
GCCACCCCAGTTCGGGCATG

Product: aspartate racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTERVIGILGGMGPLATAELFRRIIEKTPAKRDQDHPRIIIYNNPKIPDRTAFILGEGEDPRPELVESARKLESWGADFI
IMPCNTAHFFAESIQRKISIPLVSMVEETAKRIEEMGLKKVGLLATDGTIKGLVYHRALLDRGIQIAVPIKKDQELVMKG
IYEGVKAGNLELGRELLLRVARRLEKRSEGIIAGCTEVSVALKPEDLSVPLIDPLDVIAEMAVRLALGL

Sequences:

>Translated_229_residues
MTERVIGILGGMGPLATAELFRRIIEKTPAKRDQDHPRIIIYNNPKIPDRTAFILGEGEDPRPELVESARKLESWGADFI
IMPCNTAHFFAESIQRKISIPLVSMVEETAKRIEEMGLKKVGLLATDGTIKGLVYHRALLDRGIQIAVPIKKDQELVMKG
IYEGVKAGNLELGRELLLRVARRLEKRSEGIIAGCTEVSVALKPEDLSVPLIDPLDVIAEMAVRLALGL
>Mature_228_residues
TERVIGILGGMGPLATAELFRRIIEKTPAKRDQDHPRIIIYNNPKIPDRTAFILGEGEDPRPELVESARKLESWGADFII
MPCNTAHFFAESIQRKISIPLVSMVEETAKRIEEMGLKKVGLLATDGTIKGLVYHRALLDRGIQIAVPIKKDQELVMKGI
YEGVKAGNLELGRELLLRVARRLEKRSEGIIAGCTEVSVALKPEDLSVPLIDPLDVIAEMAVRLALGL

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=229, Percent_Identity=28.3842794759825, Blast_Score=78, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: =5.1.1.13 [H]

Molecular weight: Translated: 25337; Mature: 25206

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS00923 ASP_GLU_RACEMASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERVIGILGGMGPLATAELFRRIIEKTPAKRDQDHPRIIIYNNPKIPDRTAFILGEGED
CCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCC
PRPELVESARKLESWGADFIIMPCNTAHFFAESIQRKISIPLVSMVEETAKRIEEMGLKK
CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
VGLLATDGTIKGLVYHRALLDRGIQIAVPIKKDQELVMKGIYEGVKAGNLELGRELLLRV
HCEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ARRLEKRSEGIIAGCTEVSVALKPEDLSVPLIDPLDVIAEMAVRLALGL
HHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TERVIGILGGMGPLATAELFRRIIEKTPAKRDQDHPRIIIYNNPKIPDRTAFILGEGED
CCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCC
PRPELVESARKLESWGADFIIMPCNTAHFFAESIQRKISIPLVSMVEETAKRIEEMGLKK
CCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
VGLLATDGTIKGLVYHRALLDRGIQIAVPIKKDQELVMKGIYEGVKAGNLELGRELLLRV
HCEEECCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ARRLEKRSEGIIAGCTEVSVALKPEDLSVPLIDPLDVIAEMAVRLALGL
HHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2054383; 1907199 [H]