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The map label for this gene is ychF [C]

Identifier: 212223814

GI number: 212223814

Start: 619282

End: 620475

Strand: Reverse

Name: ychF [C]

Synonym: TON_0666

Alternate gene names: 212223814

Gene position: 620475-619282 (Counterclockwise)

Preceding gene: 212223817

Following gene: 212223808

Centisome position: 33.58

GC content: 55.11

Gene sequence:

>1194_bases
ATGGAGATAGGTGTCGTTGGCAAGCCAAACGTTGGAAAATCGACCTTCTTCTCGGCGGCAACCCTCGTTGACGTTCAAAT
TGCCAATTACCCTTTCACGACGATAGATGCCAACGTCGGCGTCACTTACGCGGTAGCGGAGCACCCCTGCAAGGAGCTCG
GCTGTAAGCCAAACCCGCAGAACTACGAATACAAGGATGGCCTCGCACTCATCCCGATAAAGATGATCGACGTCGCCGGT
CTCGTCCCCGGCGCCCACGAGGGCCGCGGTCTGGGCAACAAGTTCCTCGACGACCTCAGAATGGCCTCCGCGCTCATCCA
CGTCGTTGACGTTACGGGCAAGACCGATGCCGAGGGGCAGCCGACTGACTACCACGACCCGGTCGAGGACATAGAGTTCC
TGGAGAAGGAGATAGACTACTGGATATACGGCATTCTCAGGAAGAACTGGGAAAAGTTTGCCAAGAGGATAAAGCTCCAG
CACCTCAAATTGGCGCAGGCGATAGCTGACCAGCTGACGGGAATAGGCGTAAGCGAGGAAGATGCCTTTGAGGCAATCCA
CAGGCTCGGTCTGGACAACGATCCCACGAAATGGAGCGATAAGGATCTTTTGGCCTTCGTAAGGGAACTAAGGAAGGTGA
ACAAGCCGATTATCATCGCTGCCAACAAGGCCGATGCAGCTACCGATGAACATATTGAGAGGCTTATCAAGGAGGGCGAG
AAGAGGGGATACATAGTTGTTCCGACTTCAGCGGCGGCTGAGCTCACCCTCAGAAAAGCCGCAAAGGCTGGCTTCATAGA
CTACGTCCCTGGCTCAAGCGACTTCAAGATCCTGAAGCCAATGAGCGCCAAGCAGGAAAAGGCTCTCCAGCTCATCAAGG
AGAAAGTTCTCGACAGGTTTGGCTCTACCGGCGTGCAGGAAGTCATAAACAGGGCCGTCTTCGAGTTACTCCAGTTGGTT
CCGGTTTACCCGGTCGAGGACGAGCACAAGCTCACAGACCAGTTCGGCAACGTTCTGCCGCACGTCCACTTACTACCCAA
GGGCTCAACGCCGAGGGACTTAGCCTACAAAGTCCACACAGACCTCGGAAAGACCTTCCTCTACGCCGTCAACGCCAGAA
CCCACAGGCGTGTTGGAGAGGACTACGAGCTCGGGTTCAACGACATCATCAAGATTGTCGCTACCGCAAGATGA

Upstream 100 bases:

>100_bases
CACCAAAAAAGATTAGGATGCTTGGAGAGTTATAGTTTTCGGAGTTGTAGCAGACCATAGCCCTTTAAAACCCCCTGACT
AATTTACCTCGGTGGTGAGC

Downstream 100 bases:

>100_bases
AACGACCAAGAATAATCAGCGGGAGGAAAATCACTGGCCCACAGACGGCCTCTTCATTTTCTTCACTGGACGTTTCTTGA
GGTGTGCCTTTCCAGGTAGT

Product: translation-associated GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MEIGVVGKPNVGKSTFFSAATLVDVQIANYPFTTIDANVGVTYAVAEHPCKELGCKPNPQNYEYKDGLALIPIKMIDVAG
LVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTDYHDPVEDIEFLEKEIDYWIYGILRKNWEKFAKRIKLQ
HLKLAQAIADQLTGIGVSEEDAFEAIHRLGLDNDPTKWSDKDLLAFVRELRKVNKPIIIAANKADAATDEHIERLIKEGE
KRGYIVVPTSAAAELTLRKAAKAGFIDYVPGSSDFKILKPMSAKQEKALQLIKEKVLDRFGSTGVQEVINRAVFELLQLV
PVYPVEDEHKLTDQFGNVLPHVHLLPKGSTPRDLAYKVHTDLGKTFLYAVNARTHRRVGEDYELGFNDIIKIVATAR

Sequences:

>Translated_397_residues
MEIGVVGKPNVGKSTFFSAATLVDVQIANYPFTTIDANVGVTYAVAEHPCKELGCKPNPQNYEYKDGLALIPIKMIDVAG
LVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTDYHDPVEDIEFLEKEIDYWIYGILRKNWEKFAKRIKLQ
HLKLAQAIADQLTGIGVSEEDAFEAIHRLGLDNDPTKWSDKDLLAFVRELRKVNKPIIIAANKADAATDEHIERLIKEGE
KRGYIVVPTSAAAELTLRKAAKAGFIDYVPGSSDFKILKPMSAKQEKALQLIKEKVLDRFGSTGVQEVINRAVFELLQLV
PVYPVEDEHKLTDQFGNVLPHVHLLPKGSTPRDLAYKVHTDLGKTFLYAVNARTHRRVGEDYELGFNDIIKIVATAR
>Mature_397_residues
MEIGVVGKPNVGKSTFFSAATLVDVQIANYPFTTIDANVGVTYAVAEHPCKELGCKPNPQNYEYKDGLALIPIKMIDVAG
LVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQPTDYHDPVEDIEFLEKEIDYWIYGILRKNWEKFAKRIKLQ
HLKLAQAIADQLTGIGVSEEDAFEAIHRLGLDNDPTKWSDKDLLAFVRELRKVNKPIIIAANKADAATDEHIERLIKEGE
KRGYIVVPTSAAAELTLRKAAKAGFIDYVPGSSDFKILKPMSAKQEKALQLIKEKVLDRFGSTGVQEVINRAVFELLQLV
PVYPVEDEHKLTDQFGNVLPHVHLLPKGSTPRDLAYKVHTDLGKTFLYAVNARTHRRVGEDYELGFNDIIKIVATAR

Specific function: Unknown

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=278, Percent_Identity=29.136690647482, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1787454, Length=379, Percent_Identity=25.5936675461741, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1789574, Length=175, Percent_Identity=29.7142857142857, Blast_Score=72, Evalue=9e-14,
Organism=Saccharomyces cerevisiae, GI6321649, Length=404, Percent_Identity=37.1287128712871, Blast_Score=220, Evalue=3e-58,
Organism=Saccharomyces cerevisiae, GI6321773, Length=390, Percent_Identity=24.1025641025641, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24640873, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640877, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640875, Length=235, Percent_Identity=29.3617021276596, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR006073
- InterPro:   IPR013646
- InterPro:   IPR002917
- InterPro:   IPR004095
- InterPro:   IPR012676 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF08438 MMR_HSR1_C; PF02824 TGS [H]

EC number: NA

Molecular weight: Translated: 44119; Mature: 44119

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGVVGKPNVGKSTFFSAATLVDVQIANYPFTTIDANVGVTYAVAEHPCKELGCKPNPQ
CCCCCCCCCCCCCHHHHHHHHEEEEEECCCCCEEEECCCCEEEHHHHCCHHHCCCCCCCC
NYEYKDGLALIPIKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ
CCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PTDYHDPVEDIEFLEKEIDYWIYGILRKNWEKFAKRIKLQHLKLAQAIADQLTGIGVSEE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
DAFEAIHRLGLDNDPTKWSDKDLLAFVRELRKVNKPIIIAANKADAATDEHIERLIKEGE
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
KRGYIVVPTSAAAELTLRKAAKAGFIDYVPGSSDFKILKPMSAKQEKALQLIKEKVLDRF
CCCEEEEECCHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
GSTGVQEVINRAVFELLQLVPVYPVEDEHKLTDQFGNVLPHVHLLPKGSTPRDLAYKVHT
CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
DLGKTFLYAVNARTHRRVGEDYELGFNDIIKIVATAR
HHCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MEIGVVGKPNVGKSTFFSAATLVDVQIANYPFTTIDANVGVTYAVAEHPCKELGCKPNPQ
CCCCCCCCCCCCCHHHHHHHHEEEEEECCCCCEEEECCCCEEEHHHHCCHHHCCCCCCCC
NYEYKDGLALIPIKMIDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDVTGKTDAEGQ
CCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PTDYHDPVEDIEFLEKEIDYWIYGILRKNWEKFAKRIKLQHLKLAQAIADQLTGIGVSEE
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
DAFEAIHRLGLDNDPTKWSDKDLLAFVRELRKVNKPIIIAANKADAATDEHIERLIKEGE
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCC
KRGYIVVPTSAAAELTLRKAAKAGFIDYVPGSSDFKILKPMSAKQEKALQLIKEKVLDRF
CCCEEEEECCHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHH
GSTGVQEVINRAVFELLQLVPVYPVEDEHKLTDQFGNVLPHVHLLPKGSTPRDLAYKVHT
CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
DLGKTFLYAVNARTHRRVGEDYELGFNDIIKIVATAR
HHCCEEEEEECCHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]