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The map label for this gene is ydiS [C]

Identifier: 212223462

GI number: 212223462

Start: 291064

End: 292254

Strand: Reverse

Name: ydiS [C]

Synonym: TON_0316

Alternate gene names: 212223462

Gene position: 292254-291064 (Counterclockwise)

Preceding gene: 212223463

Following gene: 212223455

Centisome position: 15.82

GC content: 54.32

Gene sequence:

>1191_bases
ATGACCGAGATGAAGTACGATGTAGTGGTTGTCGGCGCAGGAATCGCCGGCCCAATCGTCGCGAGAAACGTTGCTAAAGC
TGGCTTTTCCGTCCTGCTCATCGATAAGAAGTCCGCGATAGGCACTCCAAAGCAGTGCGCCGAGGGAATCAGCAAGACGG
TCTTTGAGAAGTACGACATACCCTACGACAGACGCTTCATCAACCGTGAAATTTACGGTGCCAAACTCTACTCCCCAAGC
GGCTACGAGCTCGAGCTCAGATACAAGGAAGTCAGCGGTGTAATCCTCGAGAGGAAGGTCTTTGACAAAATGCTTGCTTA
TTACGCCGCCAAAGCTGGGGCCGACGTCCTGGCTAGAACTGAGGCAATGGATGTCATAAGAAAGGACGGAAAGATAGCAG
GAATAAAGGCCAAGCACGAGGACGAGCCCATTGAGATTTATGCTGATATCATCGTTGCTGCCGATGGCGTGGAGAGTACC
ATAGCGAGGAAGGCCGGCATAAACACCTACGCTCCGCCGCACGAGTTCGATTCTAGCTACGAGTACGAGATGCTCATCGA
GGGCTTTGACCCTGACCTAATCCACCTCTGGTTCGGGAACGAGATAGCGCCGAGGGGCTACGTCTGGGTCTTCCCCAAGG
ATGAGGATAGAGCCAACGTCGGAATAGGCATAAACTCCGACAATCCCCGGACGGCCAAGTACTACCTCGACAAGTGGCTA
AAGGAGAATAACATCCCTGTCAAGAAGCTTCTGGAGATAAACGTCGGCGTCGTTCCGGTTGGCGGCTTCGTCAAAGAGCT
CGCCAAGGACAACGTTATCGTTGTCGGCGACGCAGCAAGGCAGGTCAACCCCATGCACGGAGGCGGAATGGCCGAGGCAA
TGGAAGCCGGAACCATAGCCAGCAAGTGGATAGTCAAGGCTCTGGAAGAGGAAAACCCGGAACTTCTCAAGAACTACACG
ACCGAATGGTGGGGGACCGACGGAAAGAGGCTTGAGAAGGTCCTAAGGGTCAGGCGCGTCACGGAGAAGCTCACCGACGA
AGACCTTGACCTCTTCATCCAGATACTCAGTGGTGCGGATGCCGAAAAGATAGCCAGCGGCGACTATGGAGAGGTTGTAA
AGGCCCTCCTCAAGCACCCCAAGGTGCTCATGAGCAAGAGGAGGCTGAGCCTCCTAAAGGAGTTGCTCTAA

Upstream 100 bases:

>100_bases
CAAGGTGGGAGTTCTTCCAAGACAAGTGCATATCCTGCCGCATATGCATCAACGCCTGCCCGGTTGGCGCCCTAACCGCT
GAACCCCTGGGGGTGTCCGA

Downstream 100 bases:

>100_bases
TCACTTCTTTCCCTTCTTCCAGTCCTTGCAGTTCATATCCAGGCAAATCTCATACTCCCTGCCCTTTTCGCGGATTTTGA
CAACAGGGGCACCATCACAG

Product: geranylgeranyl hydrogenase

Products: NA

Alternate protein names: DGGGPL reductase; 2,3-di-O-geranylgeranylglyceryl phosphate reductase; Geranylgeranyl reductase; GGR [H]

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTEMKYDVVVVGAGIAGPIVARNVAKAGFSVLLIDKKSAIGTPKQCAEGISKTVFEKYDIPYDRRFINREIYGAKLYSPS
GYELELRYKEVSGVILERKVFDKMLAYYAAKAGADVLARTEAMDVIRKDGKIAGIKAKHEDEPIEIYADIIVAADGVEST
IARKAGINTYAPPHEFDSSYEYEMLIEGFDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNPRTAKYYLDKWL
KENNIPVKKLLEINVGVVPVGGFVKELAKDNVIVVGDAARQVNPMHGGGMAEAMEAGTIASKWIVKALEEENPELLKNYT
TEWWGTDGKRLEKVLRVRRVTEKLTDEDLDLFIQILSGADAEKIASGDYGEVVKALLKHPKVLMSKRRLSLLKELL

Sequences:

>Translated_396_residues
MTEMKYDVVVVGAGIAGPIVARNVAKAGFSVLLIDKKSAIGTPKQCAEGISKTVFEKYDIPYDRRFINREIYGAKLYSPS
GYELELRYKEVSGVILERKVFDKMLAYYAAKAGADVLARTEAMDVIRKDGKIAGIKAKHEDEPIEIYADIIVAADGVEST
IARKAGINTYAPPHEFDSSYEYEMLIEGFDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNPRTAKYYLDKWL
KENNIPVKKLLEINVGVVPVGGFVKELAKDNVIVVGDAARQVNPMHGGGMAEAMEAGTIASKWIVKALEEENPELLKNYT
TEWWGTDGKRLEKVLRVRRVTEKLTDEDLDLFIQILSGADAEKIASGDYGEVVKALLKHPKVLMSKRRLSLLKELL
>Mature_395_residues
TEMKYDVVVVGAGIAGPIVARNVAKAGFSVLLIDKKSAIGTPKQCAEGISKTVFEKYDIPYDRRFINREIYGAKLYSPSG
YELELRYKEVSGVILERKVFDKMLAYYAAKAGADVLARTEAMDVIRKDGKIAGIKAKHEDEPIEIYADIIVAADGVESTI
ARKAGINTYAPPHEFDSSYEYEMLIEGFDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNPRTAKYYLDKWLK
ENNIPVKKLLEINVGVVPVGGFVKELAKDNVIVVGDAARQVNPMHGGGMAEAMEAGTIASKWIVKALEEENPELLKNYTT
EWWGTDGKRLEKVLRVRRVTEKLTDEDLDLFIQILSGADAEKIASGDYGEVVKALLKHPKVLMSKRRLSLLKELL

Specific function: Is involved in the reduction of 2,3- digeranylgeranylglycerophospholipids (unsaturated archaeols) into 2,3-diphytanylglycerophospholipids (saturated archaeols) in the biosynthesis of archaeal membrane lipids. Catalyzes the formation of archaetidic acid (2

COG id: COG0644

COG function: function code C; Dehydrogenases (flavoproteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the geranylgeranyl reductase family. DGGGPL reductase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011777
- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.5.5.- [C]

Molecular weight: Translated: 44130; Mature: 43999

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMKYDVVVVGAGIAGPIVARNVAKAGFSVLLIDKKSAIGTPKQCAEGISKTVFEKYDI
CCCCEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
PYDRRFINREIYGAKLYSPSGYELELRYKEVSGVILERKVFDKMLAYYAAKAGADVLART
CHHHHHHHHHHCCEEEECCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
EAMDVIRKDGKIAGIKAKHEDEPIEIYADIIVAADGVESTIARKAGINTYAPPHEFDSSY
HHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCC
EYEMLIEGFDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNPRTAKYYLDKWL
CEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHH
KENNIPVKKLLEINVGVVPVGGFVKELAKDNVIVVGDAARQVNPMHGGGMAEAMEAGTIA
HCCCCCHHHHHCCCCCEEECCHHHHHHHCCCEEEEECCHHHCCCCCCCCHHHHHHHCHHH
SKWIVKALEEENPELLKNYTTEWWGTDGKRLEKVLRVRRVTEKLTDEDLDLFIQILSGAD
HHHHHHHHHCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
AEKIASGDYGEVVKALLKHPKVLMSKRRLSLLKELL
HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
TEMKYDVVVVGAGIAGPIVARNVAKAGFSVLLIDKKSAIGTPKQCAEGISKTVFEKYDI
CCCEEEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
PYDRRFINREIYGAKLYSPSGYELELRYKEVSGVILERKVFDKMLAYYAAKAGADVLART
CHHHHHHHHHHCCEEEECCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
EAMDVIRKDGKIAGIKAKHEDEPIEIYADIIVAADGVESTIARKAGINTYAPPHEFDSSY
HHHHHHHCCCCEEEEECCCCCCCEEEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCC
EYEMLIEGFDPDLIHLWFGNEIAPRGYVWVFPKDEDRANVGIGINSDNPRTAKYYLDKWL
CEEEEEECCCCCEEEEEECCCCCCCCEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHH
KENNIPVKKLLEINVGVVPVGGFVKELAKDNVIVVGDAARQVNPMHGGGMAEAMEAGTIA
HCCCCCHHHHHCCCCCEEECCHHHHHHHCCCEEEEECCHHHCCCCCCCCHHHHHHHCHHH
SKWIVKALEEENPELLKNYTTEWWGTDGKRLEKVLRVRRVTEKLTDEDLDLFIQILSGAD
HHHHHHHHHCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
AEKIASGDYGEVVKALLKHPKVLMSKRRLSLLKELL
HHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA