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The map label for this gene is ylqF [H]

Identifier: 209554629

GI number: 209554629

Start: 863794

End: 864618

Strand: Reverse

Name: ylqF [H]

Synonym: UUR10_0697

Alternate gene names: 209554629

Gene position: 864618-863794 (Counterclockwise)

Preceding gene: 209554069

Following gene: 209554435

Centisome position: 98.87

GC content: 21.21

Gene sequence:

>825_bases
ATGGATATTATTAATAAAAAAATTAATTGATTTCCTGGACACATGAAAAAAGCAACAGATGAGATTTTAAAAAATCTTAA
AAATGTTGATTTTTTTATTCAATTAGTTGATGCACGATGTCCAATAACATCAAGTAATAATGAACTAATAAAACAAATTG
CTTCAAAACCAATTATTAATTTAGCTAATAAAGCTGATTTAAGTGATTGAAACACTAATTTTAATAATGATTTTTTATTA
ATTTCAACTAAGAAAGTTAATGATAAAAATCTTGTTATTAAACATTTATATCAATTATTTGAACAAAAGATTAAAACATA
TCAAAAAAAAGGTTTAGTTAATCCTAAATTTATTGGCATGATTATTGGACTACCAAACATTGGTAAATCTTCATTAATTA
ATTTTTTAGCTCCTAAAAAAACCTTAAAAGTTGAAAATAGACCCGGTGTTACTAAAACACAAAGTATTCGTCAAATTAAT
CAACATTTTTATTTAATTGATACTCCTGGAATTTTTTTAAAAGACATTCAAAAAGAACGTGATGGTTTTGTTTTAACATT
AATTAATTGTATTAAAAAAGAAGTTCTGGAATTAGAAGCAATTATTCGTTTTGCTTATGAGTTTTATTTAAAAAATTACC
AAAAGGACTTATTTATAAGATATAAAATAAATCAAGTAATGAATTTTGAAGATTTTATCGATTATATTTGCCAATTATAT
AACTATAAATTAGTAAATAATGAATTTGATTATTCAAGAGCTTATGAAAACTTATTTAATGATTTTTGTAATGGATTAAT
TTGTAAAGTTAATTATGACCAATAA

Upstream 100 bases:

>100_bases
CTTATTACTCTTTTAGTAAAAAACAAAAAAGCCAATATTCACAAAAACAAATTTATGAATATTTAACATCTTTTAATGAT
TATGTATAGAATTTAATATT

Downstream 100 bases:

>100_bases
TTTTTTTAAAATAAATTGTTTAATACTAATTAATTTAATGAGGTGATATCATTGAATTATTTAACACATTATTTTAGTTT
GAAGTATAAAGGTGATTGAT

Product: ribosome biogenesis GTP-binding protein YlqF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MDIINKKINWFPGHMKKATDEILKNLKNVDFFIQLVDARCPITSSNNELIKQIASKPIINLANKADLSDWNTNFNNDFLL
ISTKKVNDKNLVIKHLYQLFEQKIKTYQKKGLVNPKFIGMIIGLPNIGKSSLINFLAPKKTLKVENRPGVTKTQSIRQIN
QHFYLIDTPGIFLKDIQKERDGFVLTLINCIKKEVLELEAIIRFAYEFYLKNYQKDLFIRYKINQVMNFEDFIDYICQLY
NYKLVNNEFDYSRAYENLFNDFCNGLICKVNYDQ

Sequences:

>Translated_274_residues
MDIINKKIN*FPGHMKKATDEILKNLKNVDFFIQLVDARCPITSSNNELIKQIASKPIINLANKADLSD*NTNFNNDFLL
ISTKKVNDKNLVIKHLYQLFEQKIKTYQKKGLVNPKFIGMIIGLPNIGKSSLINFLAPKKTLKVENRPGVTKTQSIRQIN
QHFYLIDTPGIFLKDIQKERDGFVLTLINCIKKEVLELEAIIRFAYEFYLKNYQKDLFIRYKINQVMNFEDFIDYICQLY
NYKLVNNEFDYSRAYENLFNDFCNGLICKVNYDQ
>Mature_274_residues
MDIINKKIN*FPGHMKKATDEILKNLKNVDFFIQLVDARCPITSSNNELIKQIASKPIINLANKADLSD*NTNFNNDFLL
ISTKKVNDKNLVIKHLYQLFEQKIKTYQKKGLVNPKFIGMIIGLPNIGKSSLINFLAPKKTLKVENRPGVTKTQSIRQIN
QHFYLIDTPGIFLKDIQKERDGFVLTLINCIKKEVLELEAIIRFAYEFYLKNYQKDLFIRYKINQVMNFEDFIDYICQLY
NYKLVNNEFDYSRAYENLFNDFCNGLICKVNYDQ

Specific function: GTPase required for a late step of 50S ribosomal subunit assembly [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=229, Percent_Identity=28.82096069869, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI193211047, Length=207, Percent_Identity=28.0193236714976, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31846; Mature: 31846

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS00214 FABP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIINKKINFPGHMKKATDEILKNLKNVDFFIQLVDARCPITSSNNELIKQIASKPIINL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHH
ANKADLSDNTNFNNDFLLISTKKVNDKNLVIKHLYQLFEQKIKTYQKKGLVNPKFIGMII
HCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEE
GLPNIGKSSLINFLAPKKTLKVENRPGVTKTQSIRQINQHFYLIDTPGIFLKDIQKERDG
ECCCCCHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHCCC
FVLTLINCIKKEVLELEAIIRFAYEFYLKNYQKDLFIRYKINQVMNFEDFIDYICQLYNY
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEHHHHCCHHHHHHHHHHHHCC
KLVNNEFDYSRAYENLFNDFCNGLICKVNYDQ
CEECCCCHHHHHHHHHHHHHHCCEEEEEECCC
>Mature Secondary Structure
MDIINKKINFPGHMKKATDEILKNLKNVDFFIQLVDARCPITSSNNELIKQIASKPIINL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHH
ANKADLSDNTNFNNDFLLISTKKVNDKNLVIKHLYQLFEQKIKTYQKKGLVNPKFIGMII
HCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEE
GLPNIGKSSLINFLAPKKTLKVENRPGVTKTQSIRQINQHFYLIDTPGIFLKDIQKERDG
ECCCCCHHHHHHHHCCCHHEEECCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHCCC
FVLTLINCIKKEVLELEAIIRFAYEFYLKNYQKDLFIRYKINQVMNFEDFIDYICQLYNY
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEEHHHHCCHHHHHHHHHHHHCC
KLVNNEFDYSRAYENLFNDFCNGLICKVNYDQ
CEECCCCHHHHHHHHHHHHHHCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8948633 [H]