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The map label for this gene is yhjC [C]

Identifier: 209551924

GI number: 209551924

Start: 4522747

End: 4523652

Strand: Direct

Name: yhjC [C]

Synonym: Rleg2_4357

Alternate gene names: 209551924

Gene position: 4522747-4523652 (Clockwise)

Preceding gene: 209551921

Following gene: 209551925

Centisome position: 99.67

GC content: 66.34

Gene sequence:

>906_bases
ATGATCAGGATCGAAGGCATTGCGGCTTTCGTCGCGGTGGTGGAGGCCGGCTCGGTCAGTGAGGCGGCCCGGCGGCTGAG
GCTCTCCAAATCCGTCGTCAGCGAAAGGCTGGCGGAATTGGAGAAATCGCTGGGCGGCGTCCTGCTGCACCGAACGACGC
GCAAGCTGACTTTGACGGAAGACGGTGCGGTCTTCCTGGAGCGGGCCGGGCGCATCGTGCGCGAGATCGACGAGGCCGCG
GCCGATATGGCCGAGCGGCGCGGCACCCTGTCCGGGCCAATCCGCATCGCCGCGCCGGTCACCTTCGGCCGCATGCATCT
CGGCCCGGCGCTTTATCCCTTTCTTGCCGACCATCCCGACATCGAACTGACGCTCGATATCGACGACCGGCGTGTCGATG
CCGCCTCGGACGGCTACGATGCCATCATCCGCAACGGCCCGATCGCCGACAGCCGGCTGGTCGCCTGGAAGCTTGCGCCA
AGTCGCCGCCTGCTCTGCGCGTCTCCGGATTATCTCGCCCGCCAGGGAATGCCGTCGTCGCTTGATGACCTCAACAGCCA
CCGTGGTATCTTCTATACCAATCGCGGCGTCGCCGACTGGCGCTTCCAGACGCCGGAGGGTGCGGTCGTCGTCCGGGCGC
AGCTGGCGCTCGGCATCAACAATGGCGACATGCTGCGCGACGCCGCGATCGCCGGCCTCGGCATCGCGCTGCTGCCTTCC
TTCATCGCCCGCCCGGCCATCCGCGAGGGCCGGCTTGCCGAAATCGATGTCGGCCACCAGCCGGAGGCCGAATTCATCTA
TATGGCCCATCCCGCCGGCCGAAACCCCTCGGCCAAGCTGCGCGCCATCGCCGATCATCTGAAGAAGAGCTTCGGCGATC
CGCCCTATTGGGATATTGCGGATTAA

Upstream 100 bases:

>100_bases
GGCGGCCCCTGCCGTCTCTTCCGTTGAATGGAAGATGGCATTTTCCTTTCGTTCGGATTAGTCTCCAGATTGGGGAATTT
GAATTCGGAAAGACCGAACG

Downstream 100 bases:

>100_bases
CGCATGGAATTCCAAGGCTTCTCAGGATGAAGATATGTTGCCGTCAGCGCATGCCGCAAAGAGCGTGATCGCAGAAGAAA
AGCACTACCTGACGCGTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MIRIEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAVFLERAGRIVREIDEAA
ADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPDIELTLDIDDRRVDAASDGYDAIIRNGPIADSRLVAWKLAP
SRRLLCASPDYLARQGMPSSLDDLNSHRGIFYTNRGVADWRFQTPEGAVVVRAQLALGINNGDMLRDAAIAGLGIALLPS
FIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHLKKSFGDPPYWDIAD

Sequences:

>Translated_301_residues
MIRIEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAVFLERAGRIVREIDEAA
ADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPDIELTLDIDDRRVDAASDGYDAIIRNGPIADSRLVAWKLAP
SRRLLCASPDYLARQGMPSSLDDLNSHRGIFYTNRGVADWRFQTPEGAVVVRAQLALGINNGDMLRDAAIAGLGIALLPS
FIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHLKKSFGDPPYWDIAD
>Mature_301_residues
MIRIEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTEDGAVFLERAGRIVREIDEAA
ADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPDIELTLDIDDRRVDAASDGYDAIIRNGPIADSRLVAWKLAP
SRRLLCASPDYLARQGMPSSLDDLNSHRGIFYTNRGVADWRFQTPEGAVVVRAQLALGINNGDMLRDAAIAGLGIALLPS
FIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHLKKSFGDPPYWDIAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=34.4827586206897, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=33.1058020477816, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI87081978, Length=287, Percent_Identity=31.3588850174216, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=32.8719723183391, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=27.7966101694915, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.7397260273973, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=29.3103448275862, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=31.9672131147541, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786448, Length=279, Percent_Identity=26.5232974910394, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789173, Length=250, Percent_Identity=27.2, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=30.9677419354839, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=240, Percent_Identity=24.1666666666667, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=292, Percent_Identity=23.2876712328767, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32772; Mature: 32772

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRIEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTE
CEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEC
DGAVFLERAGRIVREIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECHHHCCCHHHHHHCCCCC
IELTLDIDDRRVDAASDGYDAIIRNGPIADSRLVAWKLAPSRRLLCASPDYLARQGMPSS
EEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCEEEECCCCHHHHCCCCCC
LDDLNSHRGIFYTNRGVADWRFQTPEGAVVVRAQLALGINNGDMLRDAAIAGLGIALLPS
HHHHHCCCCEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
FIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHLKKSFGDPPYWDIA
HHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
D
C
>Mature Secondary Structure
MIRIEGIAAFVAVVEAGSVSEAARRLRLSKSVVSERLAELEKSLGGVLLHRTTRKLTLTE
CEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEEEC
DGAVFLERAGRIVREIDEAAADMAERRGTLSGPIRIAAPVTFGRMHLGPALYPFLADHPD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEECHHHCCCHHHHHHCCCCC
IELTLDIDDRRVDAASDGYDAIIRNGPIADSRLVAWKLAPSRRLLCASPDYLARQGMPSS
EEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCEEEECCCCHHHHCCCCCC
LDDLNSHRGIFYTNRGVADWRFQTPEGAVVVRAQLALGINNGDMLRDAAIAGLGIALLPS
HHHHHCCCCEEEECCCCCCEEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
FIARPAIREGRLAEIDVGHQPEAEFIYMAHPAGRNPSAKLRAIADHLKKSFGDPPYWDIA
HHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
D
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]