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The map label for this gene is ycaN [H]

Identifier: 209551865

GI number: 209551865

Start: 4466431

End: 4467327

Strand: Direct

Name: ycaN [H]

Synonym: Rleg2_4298

Alternate gene names: 209551865

Gene position: 4466431-4467327 (Clockwise)

Preceding gene: 209551857

Following gene: 209551866

Centisome position: 98.42

GC content: 64.21

Gene sequence:

>897_bases
ATGGTCGATGATCTCGAAGGCATTTCAGTCTTTCTTGCGGTGGCGGAGGCGCGCAACTTCCGCCTTGCCGGCGAGCGGCT
GGGCGTCACCCGCTCCGCCGTCAGCCAGGCTTTGCAGCGCCTGGAAGATCGCCTCGGCGTTGCGCTCGTCCAGCGCACGA
CGCGCAGCGTCAGCCTGACCGAGGCCGGCGAAGTGTTCTTTGAGGCGGTTGGCCCGTCGGTGCGGCGGGTCAGGGATGCG
ATGCAGACGGTGCGGGAAATGCAGGCGCGCCCGAGCGGTCTGCTCAGGATCACCGTCTCGTCGATCGCCGAGAGTTTTCT
GTCCGGCACCTTGCTGGCTGGCTTCATGCAGGCTTGCCCCGAGATCAAACTCGATATCACCATCACCGATGACGAATTCG
ATATCGTCGAGGCCGGCTTCGACGCGGGCGTCCGGCTCGGCGAGGTGATCGAGCAGGACATGGTCGCAATCTCAGTCTCC
GAGCGGCAGAGGCAATATGCCGTGGCATCCCCCGCCTACCTCGAGCGCCGCGGTCGTCCCCGCCATCCCGGCGAACTGCA
GGGTCATGCCTGCATCGGTTGGCGCCCGCGCCCGGATACGGCGCCCTATCGCTGGGAATTCACCGAAAATGACCGCGATT
TCGATGTCTCCGTCGATCCCGCGGTCACGACCAACGACATGGGCATGATGATCCGCATGGCCTGCGCCGGCGCCGGGATT
ACCTTCGGTATGGTGGAAACCTTTCAGTCCTATGTCGAACGCGGCGAACTCGTGCCGCTGCTCGAAGATTTCTGCCCGCC
GTTTCCGGGCTTCTATCTCTATTATCCCAGGCGCCAGCGGCAGCCGCTGAAGCTGCGGGCGCTGGTCGATCATATCAGGA
CGTCCGCCAGGCGTTAG

Upstream 100 bases:

>100_bases
CCCCGGTCGTTTCATCGCCGTGACCTGGGCTATAGATAACGCCTTCAGCTGCAGCGATTAAGTTGCCAATTGGGGATGCC
TTGGTTAGAAATACTAACCA

Downstream 100 bases:

>100_bases
TCGCCTGCTGCTGGACGCAGCTATTGGCGTGAATTGTCCGCTCTTTGTCCGCGGCATGCATTTCGCGCCACTATCAAATC
GCAGAGTATGACGTCATGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLTEAGEVFFEAVGPSVRRVRDA
MQTVREMQARPSGLLRITVSSIAESFLSGTLLAGFMQACPEIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMVAISVS
ERQRQYAVASPAYLERRGRPRHPGELQGHACIGWRPRPDTAPYRWEFTENDRDFDVSVDPAVTTNDMGMMIRMACAGAGI
TFGMVETFQSYVERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDHIRTSARR

Sequences:

>Translated_298_residues
MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLTEAGEVFFEAVGPSVRRVRDA
MQTVREMQARPSGLLRITVSSIAESFLSGTLLAGFMQACPEIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMVAISVS
ERQRQYAVASPAYLERRGRPRHPGELQGHACIGWRPRPDTAPYRWEFTENDRDFDVSVDPAVTTNDMGMMIRMACAGAGI
TFGMVETFQSYVERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDHIRTSARR
>Mature_298_residues
MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLTEAGEVFFEAVGPSVRRVRDA
MQTVREMQARPSGLLRITVSSIAESFLSGTLLAGFMQACPEIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMVAISVS
ERQRQYAVASPAYLERRGRPRHPGELQGHACIGWRPRPDTAPYRWEFTENDRDFDVSVDPAVTTNDMGMMIRMACAGAGI
TFGMVETFQSYVERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDHIRTSARR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=35.3951890034364, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=33.2191780821918, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=29.4314381270903, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=27.7966101694915, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI145693193, Length=286, Percent_Identity=27.6223776223776, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=24.8275862068966, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=26.2975778546713, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789173, Length=275, Percent_Identity=28, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=34.453781512605, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1786448, Length=281, Percent_Identity=24.9110320284698, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=120, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI145693105, Length=126, Percent_Identity=26.1904761904762, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33367; Mature: 33367

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT
CCCCHHHHHHHHHHHHHCCCEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEHH
EAGEVFFEAVGPSVRRVRDAMQTVREMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP
HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCC
EIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMVAISVSERQRQYAVASPAYLERRGRP
CEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHEEEHHHHHHHHHCCCCHHHHHCCCC
RHPGELQGHACIGWRPRPDTAPYRWEFTENDRDFDVSVDPAVTTNDMGMMIRMACAGAGI
CCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC
TFGMVETFQSYVERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDHIRTSARR
HHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDDLEGISVFLAVAEARNFRLAGERLGVTRSAVSQALQRLEDRLGVALVQRTTRSVSLT
CCCCHHHHHHHHHHHHHCCCEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEHH
EAGEVFFEAVGPSVRRVRDAMQTVREMQARPSGLLRITVSSIAESFLSGTLLAGFMQACP
HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCC
EIKLDITITDDEFDIVEAGFDAGVRLGEVIEQDMVAISVSERQRQYAVASPAYLERRGRP
CEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHEEEHHHHHHHHHCCCCHHHHHCCCC
RHPGELQGHACIGWRPRPDTAPYRWEFTENDRDFDVSVDPAVTTNDMGMMIRMACAGAGI
CCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC
TFGMVETFQSYVERGELVPLLEDFCPPFPGFYLYYPRRQRQPLKLRALVDHIRTSARR
HHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]