BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is yusZ [H]

Identifier: 209551863

GI number: 209551863

Start: 4465173

End: 4466015

Strand: Reverse

Name: yusZ [H]

Synonym: Rleg2_4296

Alternate gene names: 209551863

Gene position: 4466015-4465173 (Counterclockwise)

Preceding gene: 209551864

Following gene: 209551862

Centisome position: 98.41

GC content: 65.72

Gene sequence:

>843_bases
ATGTCTTCCACCACACCCATCTGGTTCATAACAGGCGCGTCGTCCGGTCTCGGGCGGGCGCTTGCTGAAGCGGTTCTCGC
CCGGGGCTGGCGCGCCGCCATTACCGCGCGCAGGCCCGAAGCCTTGAAAGATCTCACGGCAGAACACGGCGACCGCGCCC
TTGCTGTCTCGCTCGATGTGACGGATGCCCGCTCCGTCGCCCGCGCGGTTCATGACGCCGAAGCGCATTTCGGGGCGATC
GACGTGGTCGTCAACAATGCCGGCTACGGTTACCTCGCGGCGATCGAAGAGGGCGAGGATGCCGAGATCCGCGCCCAGTT
CGAAACCAACGTCTTCGGCTTGATCGCCGTCACCAAACATGTCCTGCCGGGCATGCGCGCGCGCCGTCGGGGGCATATCT
TCAATGTCTCTTCGCTTGGCGGGCTCGTCGCCTTCGCCGCGACCGGCTACTACCATGCCACCAAATTCGCGGTCGAAGCC
CTGTCGGAATCGCTGTCCCATGAGGTCAAGCCGCTCGGCATCGATGTGACGATCATCGAGCCCGGCGCCTTCCGCACGGA
TTGGGCCGGCCGGTCTATGGTCGAATCCAGAACCGTGATCGACGACTATGCCGAGACATCGGGCAAGCGGCGCCAGGCCA
CCCGTTCGGTCTCCGGCAAGCAGCCGGGCGATCCGGTGCGCGCCGCAGCCGCGATCATATCGGCATTCGAGGCGGATGAG
CCGCCGCTGCGCCTGTTGCTTGGCGCACCCGCCCTGAAGATCGCCCGCGAACGGCTCGATGCGCTGCGGACAAATTTCGA
CGCCTGGGCGGAGACGACGCTCAGTGCCGATTTCCCCAGCTGA

Upstream 100 bases:

>100_bases
TTTGTCGACGGCAACACCCTCCATCATGGCGGCATGGTGTTTCGCCGCAAATAACGATCACTCGGGATAAGGCCGTTTCC
GGCCGGAAAGGATGACGATC

Downstream 100 bases:

>100_bases
TCGCCCAAGAAAACACCAATCGAAAAATGGAGCTTGAAATGACGAACGTGGAAGGAAAAGTCGTTGCCATCACCGGGGCC
AGCAGCGGCATCGGAGAGGC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSSTTPIWFITGASSGLGRALAEAVLARGWRAAITARRPEALKDLTAEHGDRALAVSLDVTDARSVARAVHDAEAHFGAI
DVVVNNAGYGYLAAIEEGEDAEIRAQFETNVFGLIAVTKHVLPGMRARRRGHIFNVSSLGGLVAFAATGYYHATKFAVEA
LSESLSHEVKPLGIDVTIIEPGAFRTDWAGRSMVESRTVIDDYAETSGKRRQATRSVSGKQPGDPVRAAAAIISAFEADE
PPLRLLLGAPALKIARERLDALRTNFDAWAETTLSADFPS

Sequences:

>Translated_280_residues
MSSTTPIWFITGASSGLGRALAEAVLARGWRAAITARRPEALKDLTAEHGDRALAVSLDVTDARSVARAVHDAEAHFGAI
DVVVNNAGYGYLAAIEEGEDAEIRAQFETNVFGLIAVTKHVLPGMRARRRGHIFNVSSLGGLVAFAATGYYHATKFAVEA
LSESLSHEVKPLGIDVTIIEPGAFRTDWAGRSMVESRTVIDDYAETSGKRRQATRSVSGKQPGDPVRAAAAIISAFEADE
PPLRLLLGAPALKIARERLDALRTNFDAWAETTLSADFPS
>Mature_279_residues
SSTTPIWFITGASSGLGRALAEAVLARGWRAAITARRPEALKDLTAEHGDRALAVSLDVTDARSVARAVHDAEAHFGAID
VVVNNAGYGYLAAIEEGEDAEIRAQFETNVFGLIAVTKHVLPGMRARRRGHIFNVSSLGGLVAFAATGYYHATKFAVEAL
SESLSHEVKPLGIDVTIIEPGAFRTDWAGRSMVESRTVIDDYAETSGKRRQATRSVSGKQPGDPVRAAAAIISAFEADEP
PLRLLLGAPALKIARERLDALRTNFDAWAETTLSADFPS

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7657478, Length=256, Percent_Identity=33.984375, Blast_Score=112, Evalue=3e-25,
Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=33.8541666666667, Blast_Score=111, Evalue=9e-25,
Organism=Homo sapiens, GI19743808, Length=181, Percent_Identity=38.6740331491713, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI22507405, Length=194, Percent_Identity=38.1443298969072, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI40548397, Length=187, Percent_Identity=37.4331550802139, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI214010158, Length=187, Percent_Identity=37.4331550802139, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI214010156, Length=187, Percent_Identity=37.4331550802139, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI22758144, Length=187, Percent_Identity=37.4331550802139, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI223718074, Length=278, Percent_Identity=29.8561151079137, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI150247226, Length=181, Percent_Identity=37.0165745856354, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI50726952, Length=181, Percent_Identity=35.9116022099448, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI44680136, Length=187, Percent_Identity=31.0160427807487, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI44680133, Length=187, Percent_Identity=31.0160427807487, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI17738292, Length=187, Percent_Identity=31.0160427807487, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI119392083, Length=214, Percent_Identity=29.4392523364486, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI40254992, Length=183, Percent_Identity=29.5081967213115, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI4503817, Length=180, Percent_Identity=30.5555555555556, Blast_Score=85, Evalue=8e-17,
Organism=Homo sapiens, GI109715829, Length=192, Percent_Identity=28.6458333333333, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI7706318, Length=187, Percent_Identity=32.0855614973262, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI210032110, Length=170, Percent_Identity=30.5882352941176, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI59889578, Length=148, Percent_Identity=35.8108108108108, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI142976729, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4504503, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7705855, Length=189, Percent_Identity=27.5132275132275, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=27.5510204081633, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=28.1081081081081, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031737, Length=184, Percent_Identity=28.2608695652174, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=33.5164835164835, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=31.9148936170213, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082100, Length=184, Percent_Identity=37.5, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786701, Length=237, Percent_Identity=27.8481012658228, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790717, Length=238, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=27.7486910994764, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=184, Percent_Identity=31.5217391304348, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=208, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=233, Percent_Identity=27.0386266094421, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17507613, Length=201, Percent_Identity=29.3532338308458, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17570069, Length=200, Percent_Identity=30, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=29.3532338308458, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI115534660, Length=182, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=225, Percent_Identity=28, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=184, Percent_Identity=29.8913043478261, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193203117, Length=184, Percent_Identity=29.8913043478261, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=186, Percent_Identity=27.4193548387097, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=195, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=194, Percent_Identity=28.3505154639175, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=28.7937743190661, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=201, Percent_Identity=28.8557213930348, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71982365, Length=185, Percent_Identity=28.1081081081081, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=25.8687258687259, Blast_Score=65, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=28.0155642023346, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=191, Percent_Identity=35.0785340314136, Blast_Score=95, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=27.4611398963731, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6324126, Length=184, Percent_Identity=27.7173913043478, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=184, Percent_Identity=25.5434782608696, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI21358495, Length=209, Percent_Identity=33.4928229665072, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI28571526, Length=230, Percent_Identity=31.7391304347826, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI23397609, Length=189, Percent_Identity=33.8624338624339, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=32.1052631578947, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24580925, Length=221, Percent_Identity=30.7692307692308, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=32.843137254902, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI116007236, Length=213, Percent_Identity=29.5774647887324, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21355631, Length=166, Percent_Identity=30.7228915662651, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24643142, Length=180, Percent_Identity=31.1111111111111, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24641388, Length=193, Percent_Identity=32.6424870466321, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI21356301, Length=180, Percent_Identity=28.8888888888889, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=28.0487804878049, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24640442, Length=189, Percent_Identity=28.042328042328, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281364892, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=29.6703296703297, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=31.1881188118812, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648693, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21355889, Length=191, Percent_Identity=30.3664921465969, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24663911, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24581726, Length=163, Percent_Identity=29.4478527607362, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI281364494, Length=193, Percent_Identity=30.5699481865285, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007234, Length=192, Percent_Identity=30.7291666666667, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648944, Length=189, Percent_Identity=31.7460317460317, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639444, Length=187, Percent_Identity=31.0160427807487, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24584752, Length=179, Percent_Identity=27.3743016759777, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29939; Mature: 29808

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTTPIWFITGASSGLGRALAEAVLARGWRAAITARRPEALKDLTAEHGDRALAVSLDV
CCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEC
TDARSVARAVHDAEAHFGAIDVVVNNAGYGYLAAIEEGEDAEIRAQFETNVFGLIAVTKH
HHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
VLPGMRARRRGHIFNVSSLGGLVAFAATGYYHATKFAVEALSESLSHEVKPLGIDVTIIE
HHCCHHHHHCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PGAFRTDWAGRSMVESRTVIDDYAETSGKRRQATRSVSGKQPGDPVRAAAAIISAFEADE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
PPLRLLLGAPALKIARERLDALRTNFDAWAETTLSADFPS
CCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SSTTPIWFITGASSGLGRALAEAVLARGWRAAITARRPEALKDLTAEHGDRALAVSLDV
CCCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEC
TDARSVARAVHDAEAHFGAIDVVVNNAGYGYLAAIEEGEDAEIRAQFETNVFGLIAVTKH
HHHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
VLPGMRARRRGHIFNVSSLGGLVAFAATGYYHATKFAVEALSESLSHEVKPLGIDVTIIE
HHCCHHHHHCCCEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
PGAFRTDWAGRSMVESRTVIDDYAETSGKRRQATRSVSGKQPGDPVRAAAAIISAFEADE
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
PPLRLLLGAPALKIARERLDALRTNFDAWAETTLSADFPS
CCEEEEECCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353931; 9384377; 8396117 [H]