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The map label for this gene is ycaN [H]

Identifier: 209551842

GI number: 209551842

Start: 4446191

End: 4447084

Strand: Direct

Name: ycaN [H]

Synonym: Rleg2_4274

Alternate gene names: 209551842

Gene position: 4446191-4447084 (Clockwise)

Preceding gene: 209551839

Following gene: 209551844

Centisome position: 97.98

GC content: 62.86

Gene sequence:

>894_bases
ATGAACAGAACTCAGCTCTCGCAACTCGCCGTTCTCGCCGCCGTCTCGGAGCATCGCAGCTTCCGCGCCGCGGCCAAGGA
ACTCCTCGTCGCGCCGTCAGCGATCAGCCATGCCATATCAAGCCTGGAGGAAAGCCTGGGGGTCAGGCTTCTGGCGCGCA
CCACCCGCAGCGTCGCGCCGACGGAGGAGGGCCGCCTGCTTCTCGAAAGGCTGCGTCCGGCGCTCGAGGAGATCGATATT
GCCCTGGAGGCTGTCCGCGACACGCGCGCCAAGCCGGCCGGCAACCTGCGCATCACCGCGCCGCGCTTCGCCTCCGATCT
CCTGCTCGCCCCCCGCCTTGGCGATTTTCTCAACCTCTATCCCGATATCACCCTGGAGATCGCCAATGAGGACGGCTTCA
CCGATATCGTCAAGGAGGGGTTCGACGCCGGCATAAGGCTGGAGGAGAGCCTGGAGGCCGATATGATCGCGGTGAAGTTC
TCACCCCATTTGACGACTGTCATCGCCGCATCGCCCGAATATTTCGAGCGTTATCCAAAACCGGAACACCCACGCGACCT
CGTCCATCATCGTTGCATCAAACGGCGCTTTACCAACGGCTCCATCTATCGCTGGGAATTCGAAAAGGACGGGCAGGAAT
TGGTCGTTGCGGTCGACGGGCCGCTTGTTGTCAGCGAGGACCGGCTGGCCCTGCTTGCGGCGCTGAACGGCGCCGGCCTT
GCCTATCTCTTCGATATGCGGGTGGATGCCGAACTGGCGAGCGGCAGCCTCGTGCGGGTGCTGGAGGATTGGTGCGCGCC
CTATTCCGGGCCGTTTCTTTATTATCCCACACGGCGGCAGATGCGCCCAGCGCTGCGGGCCTTCATCGATTTCTTCAGAT
ATGCCGCTGCCTAA

Upstream 100 bases:

>100_bases
AGCTGGCGACCGCTCTATGCGGTACGGGCAGACCATATCCTTGCCGCACCAGTCAGAAAATACATGTGGTTTCTAACGGG
TTGTTCTATCATTTCGATCA

Downstream 100 bases:

>100_bases
TCCCTTGGATCGTCATCGATCCAAGGAACTAGGCAGCAATTCCAAGTGCTACAGCGTCCTTTGCGCGTCTGATAGACGCG
CGGCGCTGTAGAAGAATGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MNRTQLSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLLLERLRPALEEIDI
ALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITLEIANEDGFTDIVKEGFDAGIRLEESLEADMIAVKF
SPHLTTVIAASPEYFERYPKPEHPRDLVHHRCIKRRFTNGSIYRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGL
AYLFDMRVDAELASGSLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAFIDFFRYAAA

Sequences:

>Translated_297_residues
MNRTQLSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLLLERLRPALEEIDI
ALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITLEIANEDGFTDIVKEGFDAGIRLEESLEADMIAVKF
SPHLTTVIAASPEYFERYPKPEHPRDLVHHRCIKRRFTNGSIYRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGL
AYLFDMRVDAELASGSLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAFIDFFRYAAA
>Mature_297_residues
MNRTQLSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAPTEEGRLLLERLRPALEEIDI
ALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLYPDITLEIANEDGFTDIVKEGFDAGIRLEESLEADMIAVKF
SPHLTTVIAASPEYFERYPKPEHPRDLVHHRCIKRRFTNGSIYRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGL
AYLFDMRVDAELASGSLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAFIDFFRYAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=291, Percent_Identity=44.6735395189003, Blast_Score=253, Evalue=1e-68,
Organism=Escherichia coli, GI1787589, Length=298, Percent_Identity=38.5906040268456, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=34.7222222222222, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=30.2083333333333, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=31.6326530612245, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=28.7671232876712, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=30.5841924398625, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=27.9461279461279, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789639, Length=256, Percent_Identity=29.6875, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1789173, Length=273, Percent_Identity=31.1355311355311, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI157672245, Length=136, Percent_Identity=36.7647058823529, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693105, Length=211, Percent_Identity=26.5402843601896, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33179; Mature: 33179

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTQLSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCC
TEEGRLLLERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHC
PDITLEIANEDGFTDIVKEGFDAGIRLEESLEADMIAVKFSPHLTTVIAASPEYFERYPK
CCEEEEECCCCCHHHHHHCCCCCCCEEHHCCCCCEEEEEECCCEEEEEECCHHHHHHCCC
PEHPRDLVHHRCIKRRFTNGSIYRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCEEECCCCEEEEEHHCCCCE
AYLFDMRVDAELASGSLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAFIDFFRYAAA
EEEEEEEECHHHHCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRTQLSQLAVLAAVSEHRSFRAAAKELLVAPSAISHAISSLEESLGVRLLARTTRSVAP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCC
TEEGRLLLERLRPALEEIDIALEAVRDTRAKPAGNLRITAPRFASDLLLAPRLGDFLNLY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHCCCHHHHHHHC
PDITLEIANEDGFTDIVKEGFDAGIRLEESLEADMIAVKFSPHLTTVIAASPEYFERYPK
CCEEEEECCCCCHHHHHHCCCCCCCEEHHCCCCCEEEEEECCCEEEEEECCHHHHHHCCC
PEHPRDLVHHRCIKRRFTNGSIYRWEFEKDGQELVVAVDGPLVVSEDRLALLAALNGAGL
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCEEECCCCEEEEEHHCCCCE
AYLFDMRVDAELASGSLVRVLEDWCAPYSGPFLYYPTRRQMRPALRAFIDFFRYAAA
EEEEEEEECHHHHCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]