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The map label for this gene is ydcN [C]

Identifier: 209551825

GI number: 209551825

Start: 4430627

End: 4431196

Strand: Direct

Name: ydcN [C]

Synonym: Rleg2_4257

Alternate gene names: 209551825

Gene position: 4430627-4431196 (Clockwise)

Preceding gene: 209551820

Following gene: 209551826

Centisome position: 97.64

GC content: 67.19

Gene sequence:

>570_bases
ATGGAAGAGCAGCTGGAACAGGCAATCGGCATCCGGATCCGCAAGCTGCGGCTGGATAAAGGATTGACCCTTGATGATCT
CGCCACGGCCTCCGGGGTCAGCCGGGCGATGATTTCGCGCATCGAGCGTGCGGAAGCGAGCCCCACCGCCTCGCTGCTGG
CAAGGATCTGCGCCGCGCTCGGCCTGTCGCTGTCGGCCTTCTTCGCGGAGGAGGGGGAGCAGGCCGCGCCGCTTGCCCGC
CGCCAGGAGCAGCAGGTCTGGCGCGATCCGGAGACCGGTTATCTCAGACGTTCGGTCTCGGCGCCCGGCACCGCCTCCGA
CGTCGATATCGTCGAAGTTGAATTCCCCGCTGGCGCCCGCGTCAGCTTTCCCCCGCATGCGGCATCGCATGGCATGACCC
AGCATATCTGGCTGTTCGACGGCGAGCTGGAGATGACGGCGGGCGAGGCGGTCTACCGGCTCCGCCCCGGCGATTGCCTC
TTCATGCCGGTCGGCGAAGGCCATGTCTTCCACAATCCCGGCAACGCGCCGGCGCGTTATTGCGTCGTGCTCGATCGCGG
CGGCCGTTAG

Upstream 100 bases:

>100_bases
CGAGGCTGTGGCGAAAGCAAGGTTGGTTTGCCCGCCTTGCCGAGGCTTGATTCCATCATCAGATCATGTATTTCTCTTAT
AGTAGAAATTGGATCGAAAC

Downstream 100 bases:

>100_bases
CAACATTCATTTCAGGAGAAGACCATGCCCGATATTCGCACCCTTTCCGCCGAGGAGGCGCGCGCCGCCATTCCGGCGCT
GGCACAAGTGCTTGCCGATT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Regulatory Protein; Cro/CI Family Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; Transcriptional Regulator XRE; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFFAEEGEQAAPLAR
RQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEFPAGARVSFPPHAASHGMTQHIWLFDGELEMTAGEAVYRLRPGDCL
FMPVGEGHVFHNPGNAPARYCVVLDRGGR

Sequences:

>Translated_189_residues
MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFFAEEGEQAAPLAR
RQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEFPAGARVSFPPHAASHGMTQHIWLFDGELEMTAGEAVYRLRPGDCL
FMPVGEGHVFHNPGNAPARYCVVLDRGGR
>Mature_189_residues
MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAALGLSLSAFFAEEGEQAAPLAR
RQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEFPAGARVSFPPHAASHGMTQHIWLFDGELEMTAGEAVYRLRPGDCL
FMPVGEGHVFHNPGNAPARYCVVLDRGGR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=185, Percent_Identity=25.4054054054054, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20556; Mature: 20556

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL
CCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GLSLSAFFAEEGEQAAPLARRQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEFPAGAR
CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCCEEEEEECCCCCE
VSFPPHAASHGMTQHIWLFDGELEMTAGEAVYRLRPGDCLFMPVGEGHVFHNPGNAPARY
ECCCCCCCCCCCEEEEEEECCEEEEECCCEEEEECCCCEEEEECCCCEEEECCCCCCEEE
CVVLDRGGR
EEEEECCCC
>Mature Secondary Structure
MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL
CCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GLSLSAFFAEEGEQAAPLARRQEQQVWRDPETGYLRRSVSAPGTASDVDIVEVEFPAGAR
CCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCCEEEEEECCCCCE
VSFPPHAASHGMTQHIWLFDGELEMTAGEAVYRLRPGDCLFMPVGEGHVFHNPGNAPARY
ECCCCCCCCCCCEEEEEEECCEEEEECCCEEEEECCCCEEEEECCCCEEEECCCCCCEEE
CVVLDRGGR
EEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA