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The map label for this gene is ykfC [H]

Identifier: 209551769

GI number: 209551769

Start: 4372341

End: 4373198

Strand: Direct

Name: ykfC [H]

Synonym: Rleg2_4198

Alternate gene names: 209551769

Gene position: 4372341-4373198 (Clockwise)

Preceding gene: 209551768

Following gene: 209551781

Centisome position: 96.35

GC content: 65.97

Gene sequence:

>858_bases
ATGACGATGCTCGACCGCCGACTGCATGCCTATCGGCCCGATCTCGCCGAAGCGGGGCTCGAAGGCAAGGTAGAGGCATC
GCGTTTCGTCGAGGGCGCCCCGGCCCGCATTGCCGTTCCGGTCGTGGGCTTGCGCCCCGAACCGAACCTTGCGCGTGGCA
TCGATACCGAACTGCTGCTTGGTGAGGATGTGACGGTGTTCGATCGCGCCGACGGCTGGTGCTGGGTGAAAGCCGCGTCG
GACGGTTACGTCGGTTATCTCCCCGCAGAAGCGCTTTCGCAGGGCAGGCCGGCCCCGACCCATATCGTCACCGTTCAGCG
CACCTTCCTTTATCCGGAACCGGAGCTGCGCAAACCCCACCAGGCCATCCTGTCGATGGGAAGCCGCGTCCATGTCGCCG
GCGAGGCGGAAGCGCGCGGCAATCGCTATGTCGTGCTGGAGGATGGAACCGCGATCTTCGCCAGGCATGTCCAGCCGATC
GGCGGGCTCGACGGCGCCGATTATGTCGAGATGGCAGCCCGTTTCCTGGAAACGCCCTATCTCTGGGGCGGACGGTCCGG
CCTTGGCATCGATTGCTCCGGCCTCGTGCAACTGGCGATGCTGATGACCGGCAGAGCTGCGCCGCGCGATACCGACATGC
AGGCAGCCGGTCTCGGCCAGCCGATCGACCGCTCTGAAATCCGCCGCGGCGACCTGGTGTTCTGGAAGGGCCATGTCGCC
GTCTTCGAGGATCCGGAAACCATCCTGCACGCCAACGGCCACAGCATGACGGTGGCGCGCGAGAATTTCGAGGCCGCCGT
CAAGCGTATCGGCTGGCTGTACGAACAGCCGACCGGCTACCGCCGCCCGACCGGCTGA

Upstream 100 bases:

>100_bases
GCACTGTCGGCGGCGCGCTGTACCTGGAAAAGCTCGGCGACCTCGTCCGTGATCAGGCCCGCCGGCTGCCGCTCTGAGAG
GCCATTTGAAAGGAAACTCA

Downstream 100 bases:

>100_bases
TCAGCGGCGCGCCTCGCGCGGGTCGAGAAGATCGCGCAAGCCGTCGCCAAGCATGTTGAAACCGAAGACGGCGAGTGCGA
TGGCAAGACCGGGCAAAATC

Product: NLP/P60 protein

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MTMLDRRLHAYRPDLAEAGLEGKVEASRFVEGAPARIAVPVVGLRPEPNLARGIDTELLLGEDVTVFDRADGWCWVKAAS
DGYVGYLPAEALSQGRPAPTHIVTVQRTFLYPEPELRKPHQAILSMGSRVHVAGEAEARGNRYVVLEDGTAIFARHVQPI
GGLDGADYVEMAARFLETPYLWGGRSGLGIDCSGLVQLAMLMTGRAAPRDTDMQAAGLGQPIDRSEIRRGDLVFWKGHVA
VFEDPETILHANGHSMTVARENFEAAVKRIGWLYEQPTGYRRPTG

Sequences:

>Translated_285_residues
MTMLDRRLHAYRPDLAEAGLEGKVEASRFVEGAPARIAVPVVGLRPEPNLARGIDTELLLGEDVTVFDRADGWCWVKAAS
DGYVGYLPAEALSQGRPAPTHIVTVQRTFLYPEPELRKPHQAILSMGSRVHVAGEAEARGNRYVVLEDGTAIFARHVQPI
GGLDGADYVEMAARFLETPYLWGGRSGLGIDCSGLVQLAMLMTGRAAPRDTDMQAAGLGQPIDRSEIRRGDLVFWKGHVA
VFEDPETILHANGHSMTVARENFEAAVKRIGWLYEQPTGYRRPTG
>Mature_284_residues
TMLDRRLHAYRPDLAEAGLEGKVEASRFVEGAPARIAVPVVGLRPEPNLARGIDTELLLGEDVTVFDRADGWCWVKAASD
GYVGYLPAEALSQGRPAPTHIVTVQRTFLYPEPELRKPHQAILSMGSRVHVAGEAEARGNRYVVLEDGTAIFARHVQPIG
GLDGADYVEMAARFLETPYLWGGRSGLGIDCSGLVQLAMLMTGRAAPRDTDMQAAGLGQPIDRSEIRRGDLVFWKGHVAV
FEDPETILHANGHSMTVARENFEAAVKRIGWLYEQPTGYRRPTG

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 31213; Mature: 31082

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMLDRRLHAYRPDLAEAGLEGKVEASRFVEGAPARIAVPVVGLRPEPNLARGIDTELLL
CCHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCEEEE
GEDVTVFDRADGWCWVKAASDGYVGYLPAEALSQGRPAPTHIVTVQRTFLYPEPELRKPH
CCCEEEEECCCCEEEEEECCCCCEEEECHHHHHCCCCCCEEEEEEEEEEECCCHHCCCHH
QAILSMGSRVHVAGEAEARGNRYVVLEDGTAIFARHVQPIGGLDGADYVEMAARFLETPY
HHHHHCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
LWGGRSGLGIDCSGLVQLAMLMTGRAAPRDTDMQAAGLGQPIDRSEIRRGDLVFWKGHVA
EECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHCCCCCEEEEECCEE
VFEDPETILHANGHSMTVARENFEAAVKRIGWLYEQPTGYRRPTG
EEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TMLDRRLHAYRPDLAEAGLEGKVEASRFVEGAPARIAVPVVGLRPEPNLARGIDTELLL
CHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCEEEE
GEDVTVFDRADGWCWVKAASDGYVGYLPAEALSQGRPAPTHIVTVQRTFLYPEPELRKPH
CCCEEEEECCCCEEEEEECCCCCEEEECHHHHHCCCCCCEEEEEEEEEEECCCHHCCCHH
QAILSMGSRVHVAGEAEARGNRYVVLEDGTAIFARHVQPIGGLDGADYVEMAARFLETPY
HHHHHCCCEEEEECCCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC
LWGGRSGLGIDCSGLVQLAMLMTGRAAPRDTDMQAAGLGQPIDRSEIRRGDLVFWKGHVA
EECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCHHHCCCCCEEEEECCEE
VFEDPETILHANGHSMTVARENFEAAVKRIGWLYEQPTGYRRPTG
EEECCCCEEECCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]