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The map label for this gene is hofQ [C]

Identifier: 209551759

GI number: 209551759

Start: 4361518

End: 4363017

Strand: Direct

Name: hofQ [C]

Synonym: Rleg2_4188

Alternate gene names: 209551759

Gene position: 4361518-4363017 (Clockwise)

Preceding gene: 209551758

Following gene: 209551760

Centisome position: 96.11

GC content: 62.53

Gene sequence:

>1500_bases
ATGGGCAATTCAACGCGGCGCGCCGGGCTTCTCCTCACAGGTTTTTTCTCGCTGGCGGTCGGTATCTCCGGTATTGCGCC
GGCCTCTTTCGCGCCGCTTCTGGGCTCCAGCGAGGCGCGTGCCGATTCCGAGAACCTGGTTCGCATCTCGCAGACCGGCC
GCGATGCCCATCGTCGGCTGAAGCTCGGGCTGAACAAGGCCGTTGTCGTCGATCTGCCGGAGGATGCGCATGATATTCTC
GTCTCCGATCCGACCATGGCCGATGCCGTCACCCGCACCTCGCGGCGCATCTACCTGTTCGGCAAGAAGGTCGGCCAGAC
GAATATTTTCGTTTTCGGCGCCGGCGGGCAGGAGATCGTCAATCTCGACATCGAGATCGAGCGCGATGTTTCCGGCCTCG
AAGTCAATCTCCACCGCTTCATTCCAGACTCCAACATCAATGTCGAAATCGTCTCCGACAACATCGTGCTGACCGGCACC
GTGCGCACGCCGCAGGATGCCACGCAGGCGGCCGATCTGGCGCAAGTCTTCCTGAAGGGCGGCGAGGCCACGACCAGAAC
CGAGACGGCATCGGGTACCGGCGGCGACAGCTCGGTGGCGCTTTTTGCTGAAGGCCGCCAGACCTCGCAGGTCGTCAACC
TGCTGCAGATCGAAGGCGAAGACCAGGTCACCCTCAAGGTGACGATCGCCGAGGTTCGTCGCGAGGTGCTGAAGCAGCTC
GGCTTCGACAATCTGGTTTCCAATTCCTCCGGCATGACGGTCGCCCAGCTCGGCAGCCCCAGCGCCGACAGCGCCACATC
CGTCGTTGGCGGTGGCCTGGCGGCGCTCTTTAAGAGCTCGATCGGGAAATATGACATTTCGACCTACCTCAACGCGCTGG
AGCAGGCCAAGGTCGTCAAGACGCTCGCCGAGCCGACGCTGACGGCAATATCGGGCCAGGCCGCGACCTTCAATTCCGGC
GGCCAACAGCTCTATTCGACAACCGACAGCAACGGCAACGTCACCGTCGTGCCGTTCAACTACGGTATCAACCTCGCCTT
CAAGCCGGTCGTGCTCTCATCGGGACGCATCAGTCTGCAGATCAAGACCAATGTCTCCGAACCGGTCGCCGGCAGCAGCG
GCGCGACCTATCAGCGCCGCTCGGCGGAAACCTCGGTGGAACTGCCCTCGGGCGGCTCCATCGCGCTGGCCGGCCTGATT
CGCGACAACGTCTCGCAGACGATGGGCGGCACACCTGGCGTATCGAAAATCCCGCTGCTCGGTACCCTCTTCCGCCAGAA
GGGGTTCGAGCGTCAGGAAACCGAGCTTGTCATCATCGCGACGCCCTATCTGGTGCGCCCGGTGGCGCGCAATCAACTCA
ATCGGCCGGACGATAATTTCAGCCCCGAGAACGACGGTGCGACCTTCTTCCTCAACCGTGTCAACAAGGTCTATGGCCGC
CGCGAGGCGCCCGTCGCCGATGCGCAGTTCCACGGATCGATCGGGTTCATCTACAAATGA

Upstream 100 bases:

>100_bases
GAGCGGCGACAACGGCAGTGCGATCATCCAGGTCATCAAATCGGGCGCCATCGTCACCGATGCCAGCGCAGCGCCGAAGG
CGGAGTAAGAGAACGTGCAA

Downstream 100 bases:

>100_bases
GCGGGGCAGGATCGGCAGCAATGGAAGAGAACAGAGATCAGGCGATGGCCCATATCAATTCGACGACACCCCGCCTCGGA
ATCGAGAAGGGGCTCTTTGC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MGNSTRRAGLLLTGFFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPEDAHDIL
VSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGT
VRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQL
GFDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSG
GQQLYSTTDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSSGATYQRRSAETSVELPSGGSIALAGLI
RDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGR
REAPVADAQFHGSIGFIYK

Sequences:

>Translated_499_residues
MGNSTRRAGLLLTGFFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPEDAHDIL
VSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGT
VRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQL
GFDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSG
GQQLYSTTDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSSGATYQRRSAETSVELPSGGSIALAGLI
RDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGR
REAPVADAQFHGSIGFIYK
>Mature_498_residues
GNSTRRAGLLLTGFFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPEDAHDILV
SDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGTV
RTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG
FDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGG
QQLYSTTDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSSGATYQRRSAETSVELPSGGSIALAGLIR
DNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRR
EAPVADAQFHGSIGFIYK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=240, Percent_Identity=29.5833333333333, Blast_Score=76, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 52910; Mature: 52779

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50914 BON

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNSTRRAGLLLTGFFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRL
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCHHHHHHH
KLGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIV
HCCCCCEEEEECCCCCCCEEECCCCHHHHHHHCCCEEEEEEEECCCEEEEEEECCCCEEE
NLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKG
EEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHCC
GEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQL
CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHEEEECCCCEEEEEEEHHHHHHHHHHHC
GFDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVK
CCCHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
TLAEPTLTAISGQAATFNSGGQQLYSTTDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQ
HHHCCHHEEECCCCEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCEEEEE
IKTNVSEPVAGSSGATYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLL
EEECCCCCCCCCCCCCEECCCCCCEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCHHH
GTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGR
HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCC
REAPVADAQFHGSIGFIYK
CCCCCCCCEECCCEEEEEC
>Mature Secondary Structure 
GNSTRRAGLLLTGFFSLAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRL
CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCEEEEECCCHHHHHHH
KLGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIV
HCCCCCEEEEECCCCCCCEEECCCCHHHHHHHCCCEEEEEEEECCCEEEEEEECCCCEEE
NLDIEIERDVSGLEVNLHRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKG
EEEEEEECCCCCEEEEEEEECCCCCCEEEEEECCEEEEEECCCCCHHHHHHHHHHHHHCC
GEATTRTETASGTGGDSSVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQL
CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHEEEECCCCEEEEEEEHHHHHHHHHHHC
GFDNLVSNSSGMTVAQLGSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVK
CCCHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
TLAEPTLTAISGQAATFNSGGQQLYSTTDSNGNVTVVPFNYGINLAFKPVVLSSGRISLQ
HHHCCHHEEECCCCEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEEEECCEEEEE
IKTNVSEPVAGSSGATYQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLL
EEECCCCCCCCCCCCCEECCCCCCEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCCCHHH
GTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGR
HHHHHHCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHHCC
REAPVADAQFHGSIGFIYK
CCCCCCCCEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]