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The map label for this gene is deoB [H]

Identifier: 209551752

GI number: 209551752

Start: 4356315

End: 4357535

Strand: Reverse

Name: deoB [H]

Synonym: Rleg2_4181

Alternate gene names: 209551752

Gene position: 4357535-4356315 (Counterclockwise)

Preceding gene: 209551753

Following gene: 209551751

Centisome position: 96.02

GC content: 64.29

Gene sequence:

>1221_bases
ATGGCGCGTGCCTTTCTTTTCGTTCTGGATTCCTTCGGCGTCGGCGGCGCGCCGGATGCGGCGGCCTATGGCGATGAGGG
CGCCGATACGCTCGGGCATATCGCCGAGTTCTGCGCGGCAGGTGCCGGAGACCGCGCCGGATTGCGCGATGGGCCGCTCT
CCCTGCCCAACCTGTCGGAACTCGGGCTGATGCAGATCGCCCGCTCCGCCTCCGGCCGGTTCCCGGCCGGCATGCCGATC
CCGGAGAAGGTCTATGGCATTTACGGCGCCGCCACCGAAATCTCCCGCGGCAAGGATACGCCGTCAGGCCACTGGGAGAT
CGCAGGAACACCCGTCAGTTTCGATTGGGGTTATTTCCCGACGGAGGGCGACGCCTTTCCCGAGGAACTCATCGAGGCGC
TTTGCAGGGATGCCGGGGTGTCCGGCATTCTCGGCAATTGCCATGCTTCGGGAACGGAAATCATTGCCCGGCTTGGCGAG
GAGCATATCCGCACCGGCAAGCCGATCTGCTACACCTCCTCGGATTCGGTCTTCCAGGTCGCGGCGCACGAAGTGCATTT
CGGCCTCGATCGCCTGCTCGCCTTCTGCCAGGTCGCCCGGGGACTGCTCGATCGCTACAATATCGGCCGTGTCATCGCCC
GACCTTTCATCGGACATTCCAGTTCCACCTTCCAGCGCACCGGAAACCGGCGCGACTTCTCGGTGCTGCCGCCGGAGCCA
ACGCTGCTTGACCGGCTGATCGAACACGGCCGGCACGTGCACGCTGTGGGAAAGATCGGCGACATCTTCGCGCATCAAGG
GATTTCGCGCCTGATCAAGGCAAATGGCAACGAGGCGCTGATGGATGCGACGCTCGCGACCATCGACGAGGCCGAGGACG
GCGATCTGGTCTTCACCAATTTCGTCGACTTCGACATGGTTTACGGCCATCGCCGCGATGTGCCGGGTTATGCCGCCGCA
CTCGAAGCCTTCGATGCGCGACTGGCCGAAGTCCACAAGAAATTGAAGCCGGGCGATCTCGTCGTGCTCACCGCCGACCA
CGGCTGCGACCCGACCTGGCGCGGCACGGACCATACGCGCGAGCGTGTGCCTGTCATCGCCTATGGCCCCGGCATCCGGT
CGCGTTCAATCGGCGTGCGCCGCAGCTATGCCGATATCGGCGAGAGCATTGCGCGCCATCTCGGCATTCCGGCCGGACCG
CATGGAAGGAGTTTTCTGTGA

Upstream 100 bases:

>100_bases
CGCCCCTTCGCGAATTTGCCAAGCCGGTCGCAGCATTATATGGCTGAGGCTCTGCCGCCTCCGACGTTTCCGGGGCGGCG
ATCGGTTCTTCGGGTGTAAA

Downstream 100 bases:

>100_bases
CGTTGCATTTGAAGAAGGTCGAATTGCACTGCCATCTGGAGGGTGCAGCTCCTCCTGAACTGACCGCGGCGCAGGCGCGC
AAATACGGCGTCGACATCAG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MARAFLFVLDSFGVGGAPDAAAYGDEGADTLGHIAEFCAAGAGDRAGLRDGPLSLPNLSELGLMQIARSASGRFPAGMPI
PEKVYGIYGAATEISRGKDTPSGHWEIAGTPVSFDWGYFPTEGDAFPEELIEALCRDAGVSGILGNCHASGTEIIARLGE
EHIRTGKPICYTSSDSVFQVAAHEVHFGLDRLLAFCQVARGLLDRYNIGRVIARPFIGHSSSTFQRTGNRRDFSVLPPEP
TLLDRLIEHGRHVHAVGKIGDIFAHQGISRLIKANGNEALMDATLATIDEAEDGDLVFTNFVDFDMVYGHRRDVPGYAAA
LEAFDARLAEVHKKLKPGDLVVLTADHGCDPTWRGTDHTRERVPVIAYGPGIRSRSIGVRRSYADIGESIARHLGIPAGP
HGRSFL

Sequences:

>Translated_406_residues
MARAFLFVLDSFGVGGAPDAAAYGDEGADTLGHIAEFCAAGAGDRAGLRDGPLSLPNLSELGLMQIARSASGRFPAGMPI
PEKVYGIYGAATEISRGKDTPSGHWEIAGTPVSFDWGYFPTEGDAFPEELIEALCRDAGVSGILGNCHASGTEIIARLGE
EHIRTGKPICYTSSDSVFQVAAHEVHFGLDRLLAFCQVARGLLDRYNIGRVIARPFIGHSSSTFQRTGNRRDFSVLPPEP
TLLDRLIEHGRHVHAVGKIGDIFAHQGISRLIKANGNEALMDATLATIDEAEDGDLVFTNFVDFDMVYGHRRDVPGYAAA
LEAFDARLAEVHKKLKPGDLVVLTADHGCDPTWRGTDHTRERVPVIAYGPGIRSRSIGVRRSYADIGESIARHLGIPAGP
HGRSFL
>Mature_405_residues
ARAFLFVLDSFGVGGAPDAAAYGDEGADTLGHIAEFCAAGAGDRAGLRDGPLSLPNLSELGLMQIARSASGRFPAGMPIP
EKVYGIYGAATEISRGKDTPSGHWEIAGTPVSFDWGYFPTEGDAFPEELIEALCRDAGVSGILGNCHASGTEIIARLGEE
HIRTGKPICYTSSDSVFQVAAHEVHFGLDRLLAFCQVARGLLDRYNIGRVIARPFIGHSSSTFQRTGNRRDFSVLPPEPT
LLDRLIEHGRHVHAVGKIGDIFAHQGISRLIKANGNEALMDATLATIDEAEDGDLVFTNFVDFDMVYGHRRDVPGYAAAL
EAFDARLAEVHKKLKPGDLVVLTADHGCDPTWRGTDHTRERVPVIAYGPGIRSRSIGVRRSYADIGESIARHLGIPAGPH
GRSFL

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=410, Percent_Identity=55.8536585365854, Blast_Score=467, Evalue=1e-133,
Organism=Escherichia coli, GI1789781, Length=426, Percent_Identity=29.81220657277, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43623; Mature: 43491

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAFLFVLDSFGVGGAPDAAAYGDEGADTLGHIAEFCAAGAGDRAGLRDGPLSLPNLSE
CCCEEEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LGLMQIARSASGRFPAGMPIPEKVYGIYGAATEISRGKDTPSGHWEIAGTPVSFDWGYFP
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEECCCCCCC
TEGDAFPEELIEALCRDAGVSGILGNCHASGTEIIARLGEEHIRTGKPICYTSSDSVFQV
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEHH
AAHEVHFGLDRLLAFCQVARGLLDRYNIGRVIARPFIGHSSSTFQRTGNRRDFSVLPPEP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCH
TLLDRLIEHGRHVHAVGKIGDIFAHQGISRLIKANGNEALMDATLATIDEAEDGDLVFTN
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEE
FVDFDMVYGHRRDVPGYAAALEAFDARLAEVHKKLKPGDLVVLTADHGCDPTWRGTDHTR
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHH
ERVPVIAYGPGIRSRSIGVRRSYADIGESIARHLGIPAGPHGRSFL
HCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
ARAFLFVLDSFGVGGAPDAAAYGDEGADTLGHIAEFCAAGAGDRAGLRDGPLSLPNLSE
CCEEEEEEHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
LGLMQIARSASGRFPAGMPIPEKVYGIYGAATEISRGKDTPSGHWEIAGTPVSFDWGYFP
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEECCCCCCC
TEGDAFPEELIEALCRDAGVSGILGNCHASGTEIIARLGEEHIRTGKPICYTSSDSVFQV
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEHH
AAHEVHFGLDRLLAFCQVARGLLDRYNIGRVIARPFIGHSSSTFQRTGNRRDFSVLPPEP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCCH
TLLDRLIEHGRHVHAVGKIGDIFAHQGISRLIKANGNEALMDATLATIDEAEDGDLVFTN
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEE
FVDFDMVYGHRRDVPGYAAALEAFDARLAEVHKKLKPGDLVVLTADHGCDPTWRGTDHTR
CCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHH
ERVPVIAYGPGIRSRSIGVRRSYADIGESIARHLGIPAGPHGRSFL
HCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA