BacMap

Definition	Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome.
Accession	NC_011369
Length	4,537,948

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The map label for this gene is phnL [H]

Identifier: 209551690

GI number: 209551690

Start: 4300138

End: 4300845

Strand: Reverse

Name: phnL [H]

Synonym: Rleg2_4119

Alternate gene names: 209551690

Gene position: 4300845-4300138 (Counterclockwise)

Preceding gene: 209551691

Following gene: 209551689

Centisome position: 94.78

GC content: 65.96

Gene sequence:

>708_bases
ATGCCAACGCCCCTCGTCGTTTCCGAAGTCTCGAAAAGCTTCACCATGCATCTGCGCGACGGCATCCGGCTGCCCGTCGT
CTCCAATGTCGCCTTCTCGGTCGCTTCAGGCGAATGCGTCGTGCTCGGCGGTCCGTCGGGCGTCGGCAAGAGCTCGCTGC
TGAAGATGATCTACGGCAATTATGCCGTCGACACCGGCCAGATCCTCATCCGCCACGACGGGCGCATCGTCGATCTCGCC
GCCGCTGATCCGCGCACCGTGCTCCACGTGCGGCGCCATACGCTCGGTTACGTCAGCCAGTTCCTGCGCACCGTGCCGCG
CGTCGCGGCGATCGACGTGGTCGCCGAACCGCTGGTGGCGCGCGGCGAGGAAGCCGGCACGGCACGGGAAAAGGCGGGCG
CCCTGCTTGCCAGGCTCAATCTGCCGGAGGCGCTCTGGCAGCTTCCGCCCGCCACCTTCTCCGGCGGCGAGCAGCAGCGG
GTCAATATCGCCCGCGGCTTCATCACCGAACACAGAATCTTGCTTCTCGACGAACCCACAGCCTCGCTCGACGCCCGCAA
CCGCGCCGTCGTCGTCGGCATGATCGAGGAGAAGAAGAAGGCCGGGGTCGCCCTTCTCGGCATCTTCCACGACGAGGAAG
TGCGGGAAGCCGTCGCCGACCGCATTCTCGACGTTCAGCTTTTCTCTCCCGGAAAGATCGCCGCATGA

Upstream 100 bases:

>100_bases
CTCGATCCTGCAGGTCTGAGCAGTTCAAAGTTCCACAGCGTCCTTTGCGCATCTTTCGAACGCGCGACGCCGTCGGTCCG
AAACCAGGAAAGAAGACATC

Downstream 100 bases:

>100_bases
ACCGCAAGCTGGGTATCGAGCCCTATATCCACGACACGGCATCCGTCAGCGATTCCACCTTCGGCCACTATACCGAGGTC
TCGGAGCGCTGCCGCATCAG

Product: phosphonate C-P lyase system protein PhnL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MPTPLVVSEVSKSFTMHLRDGIRLPVVSNVAFSVASGECVVLGGPSGVGKSSLLKMIYGNYAVDTGQILIRHDGRIVDLA
AADPRTVLHVRRHTLGYVSQFLRTVPRVAAIDVVAEPLVARGEEAGTAREKAGALLARLNLPEALWQLPPATFSGGEQQR
VNIARGFITEHRILLLDEPTASLDARNRAVVVGMIEEKKKAGVALLGIFHDEEVREAVADRILDVQLFSPGKIAA

Sequences:

>Translated_235_residues
MPTPLVVSEVSKSFTMHLRDGIRLPVVSNVAFSVASGECVVLGGPSGVGKSSLLKMIYGNYAVDTGQILIRHDGRIVDLA
AADPRTVLHVRRHTLGYVSQFLRTVPRVAAIDVVAEPLVARGEEAGTAREKAGALLARLNLPEALWQLPPATFSGGEQQR
VNIARGFITEHRILLLDEPTASLDARNRAVVVGMIEEKKKAGVALLGIFHDEEVREAVADRILDVQLFSPGKIAA
>Mature_234_residues
PTPLVVSEVSKSFTMHLRDGIRLPVVSNVAFSVASGECVVLGGPSGVGKSSLLKMIYGNYAVDTGQILIRHDGRIVDLAA
ADPRTVLHVRRHTLGYVSQFLRTVPRVAAIDVVAEPLVARGEEAGTAREKAGALLARLNLPEALWQLPPATFSGGEQQRV
NIARGFITEHRILLLDEPTASLDARNRAVVVGMIEEKKKAGVALLGIFHDEEVREAVADRILDVQLFSPGKIAA

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=219, Percent_Identity=29.6803652968037, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI9955963, Length=168, Percent_Identity=33.9285714285714, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI255708477, Length=198, Percent_Identity=31.3131313131313, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=56.4814814814815, Blast_Score=250, Evalue=5e-68,
Organism=Escherichia coli, GI1787029, Length=210, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87081834, Length=191, Percent_Identity=32.4607329842932, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=32.8358208955224, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787105, Length=211, Percent_Identity=29.3838862559242, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1786872, Length=192, Percent_Identity=34.375, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789672, Length=202, Percent_Identity=30.6930693069307, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1789962, Length=207, Percent_Identity=29.4685990338164, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=30.1507537688442, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787089, Length=196, Percent_Identity=31.6326530612245, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=31.4655172413793, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=33.5135135135135, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787500, Length=212, Percent_Identity=29.7169811320755, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786698, Length=205, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48995001, Length=203, Percent_Identity=30.5418719211823, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790544, Length=236, Percent_Identity=29.2372881355932, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=33.495145631068, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87081709, Length=199, Percent_Identity=30.1507537688442, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788225, Length=202, Percent_Identity=30.1980198019802, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787712, Length=208, Percent_Identity=28.8461538461538, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788506, Length=214, Percent_Identity=29.4392523364486, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787758, Length=199, Percent_Identity=27.6381909547739, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790467, Length=210, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=28.3783783783784, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI145693107, Length=201, Percent_Identity=29.3532338308458, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=28.780487804878, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789593, Length=196, Percent_Identity=31.6326530612245, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=29.2792792792793, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=26.2931034482759, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789032, Length=201, Percent_Identity=30.3482587064677, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786563, Length=199, Percent_Identity=32.1608040201005, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788450, Length=190, Percent_Identity=31.0526315789474, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48994883, Length=211, Percent_Identity=27.4881516587678, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1788210, Length=207, Percent_Identity=29.951690821256, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787759, Length=212, Percent_Identity=30.6603773584906, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787164, Length=236, Percent_Identity=30.0847457627119, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=27.2277227722772, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=26.046511627907, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788897, Length=231, Percent_Identity=24.6753246753247, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788644, Length=205, Percent_Identity=28.780487804878, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=27.8048780487805, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=177, Percent_Identity=30.5084745762712, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI25146777, Length=219, Percent_Identity=29.6803652968037, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=188, Percent_Identity=29.7872340425532, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=170, Percent_Identity=33.5294117647059, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=213, Percent_Identity=29.5774647887324, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323959, Length=180, Percent_Identity=28.8888888888889, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI85726357, Length=184, Percent_Identity=30.9782608695652, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666092, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21357907, Length=164, Percent_Identity=32.9268292682927, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25268; Mature: 25136

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPLVVSEVSKSFTMHLRDGIRLPVVSNVAFSVASGECVVLGGPSGVGKSSLLKMIYGN
CCCCHHHHHHHHHHHHHHHCCCCCCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
YAVDTGQILIRHDGRIVDLAAADPRTVLHVRRHTLGYVSQFLRTVPRVAAIDVVAEPLVA
EEECCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RGEEAGTAREKAGALLARLNLPEALWQLPPATFSGGEQQRVNIARGFITEHRILLLDEPT
CCCCCCCHHHHHHHHHEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC
ASLDARNRAVVVGMIEEKKKAGVALLGIFHDEEVREAVADRILDVQLFSPGKIAA
CCCCCCCCEEEEEEEHHHCCCCEEEEEEECCHHHHHHHHHHHEEEEEECCCCCCC
>Mature Secondary Structure 
PTPLVVSEVSKSFTMHLRDGIRLPVVSNVAFSVASGECVVLGGPSGVGKSSLLKMIYGN
CCCHHHHHHHHHHHHHHHCCCCCCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
YAVDTGQILIRHDGRIVDLAAADPRTVLHVRRHTLGYVSQFLRTVPRVAAIDVVAEPLVA
EEECCCEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
RGEEAGTAREKAGALLARLNLPEALWQLPPATFSGGEQQRVNIARGFITEHRILLLDEPT
CCCCCCCHHHHHHHHHEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCC
ASLDARNRAVVVGMIEEKKKAGVALLGIFHDEEVREAVADRILDVQLFSPGKIAA
CCCCCCCCEEEEEEEHHHCCCCEEEEEEECCHHHHHHHHHHHEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]