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The map label for this gene is yciR [C]

Identifier: 209551672

GI number: 209551672

Start: 4277580

End: 4279964

Strand: Direct

Name: yciR [C]

Synonym: Rleg2_4101

Alternate gene names: 209551672

Gene position: 4277580-4279964 (Clockwise)

Preceding gene: 209551664

Following gene: 209551674

Centisome position: 94.26

GC content: 63.56

Gene sequence:

>2385_bases
ATGTTTTCGGTCATTGCCTGTATTCGCGACAATCACGATTGGCGCTTGGTCATCGTGGCGGCCGTGGTCTGCCTGGTGGG
CGCCATGGCGGCGATGCTGCTGTATTCCCGTGCCCAGGAATGCGACGCCGGACAGCGCAAGCTCTGGATCGGCGCGTCGG
GCTTTGCCTTCGGCACCGGCGTATGGGCAACCCATTTCATCGCCATGCTCGCTTATGATGGCGGCACCCCGATCAGTTAC
GCGCTCGACCTGACGCTGCTTTCCTTTTTCCTGTCGGTCGGAGGCTCATGGGTGGCGATCCTCGCCGCCTCGCAACGTGA
GGCAAGATTTTCCTCCACCCGCGGTGGGGCCCTGATGGCACTCGGCATCGCTTCCATGCACCTGACCGGCATGCAGGCGA
TCGAAACACAGGCGGTAATCCTCTACGATTCCGCAATGACACTGACAGCGGTCGTTGCCGGAATGCTTCTCTCGAGCGCC
GCCTTCCATCTATTTTTCAATCTGAAGGGCATGAGGCGTCTCCTCAGCGCATCGCTGGTCTTCGTCCTCGCCATCTGCAC
GCTTCACTTCATGTCGATGGGCAGCATTACCCTCGTGCCGGACCCCGGCAAGGCGGTTCCGACATTGGTGCTCGACACCA
GGGTGCTTGCCGCAATCGTCGTGGTGGCGGCAACGGCTCTTATCCTCGTCGCCCTTGCCGTGGTCTTCGTCCAAAGCCAC
CTGACGGATCTGCGCGGGCTTGCCAATGCCTCGCAGGAGGGGCTGCTGATCCTGCGCGAAGGCCGGATCATCGATGTCAA
CGAGCGGTTCCAGGCCTTATCCGGCTGGAAGCTTGCCGATCTCTCGGGCAAGGCGCCCTCGGATGTGCTGACGGCCATTC
AGGCGCCCCGGGAGAACAGGCCCGGCGAGACGCTGCTGAACACTCGCACCGGCAGAGAGATCGCCGTAGACGTAAACTCC
AGCAGGATCGTTTATCGTGGCCGCGATTGCGAGGTGCTGGCGGTGCGCGATCTCACCGAGCGCAAGCAGGCCGAGGAGAT
GATCGAGCATCTCGCCCACCACGACGTGCTCACCGATCTGCCGAACAGGTCGCTGTTCGACACCCGCATCCGGCAGGCGC
TGCAGGTGGCGGAACGCAAGAACACCGAGGTCGCGCTGTTCTGTCTCGACCTCGATCGATTCAAGGCCGTCAATGACATT
TTCGGCCATGCCGAAGGCGACCGCATTCTCCGCAAGGTCGCCGCTATCCTGCGCCGGGTGGCCGGTGAGAGCGATACGAT
CGCCCGGCTCGGCGGCGACGAATTCGCCATCATCCAGTCCGATGGGCAGCAGCCGGCGTCGGCGCAAAAGCTTGCGGCTG
ATATCATCGACGAATTCGCCGCCGAGATGGACACGGCCCGTGACCCCACAGCCGTCGGGGTCAGCCTCGGCATCGCGCTC
TATCCAAGAGATGGGAGCACGGCCGAAGAACTCTGCAACAACGCCGATACCGCGCTCTACCGCGTCAAGCATGATGGCCG
CGGCCGGGCCTGTTTCTTCGACGCGGAAATGGACGAAGCGGCGCGCAACCGCCGCCAGATCGAAAGCGACCTGCGCCATG
CGATCATCCGCAACCAACTCCATGTCAGCTATCAGCCGATCCTCAACGCACAGAGCGTCGAGATCAGCGGCTACGAGGCC
TTGATGCGCTGGCACCGGCCGGGCCACGGCTTGACCGAGCCCGACATTTTCATCCCCGTCGCCGAGGAAAGCGGATCGAT
CGTTCAGCTAGGCGAATGGATATTGCAGCAGGCCTGCAGGGAGGCCGCGCGTTGGCCGCAGCCGCTGACGATTGCAGTCA
ATGTTTCGCCGGTGCAGTTCATGCTGCCCAACCTGTGCGAGCGGGTCGAGGCGGTCCTTGACGAGACGGGGCTCGCCCCC
GATCGGCTGGAGCTTGAGATCACCGAGGCCGCCCTGATCCGCGATCGCGACCGGGTGATGGCAACGCTGCAGCGCCTGCG
CAAGTTGGGGGTGCACATCGTCATGGACGATTTCGGCACCGGTTACTCTTCGCTGTCGAACCTGCGCTCGTTTCCCTTCG
ACAAGATCAAGGTCGACCGCAGCTTCACCGGCGTGCTGGAGCATGACGCTGCGGCGCGATCGATCGTGCGGGCTATCATC
GGTCTCGGCCACAGCCTCGGCATGCCCGTCGTCACCGAGGGTGTGGAAACCGAGATGCAGCGCCGGATCGTCGTTGAGGA
AGGCTGCGCGCAGGTGCAGGGCCTGCTGCTCGGCAAGCCGGATATCGAGCCGAGCATGAAGCCAGCCGTTCGCAAGAACG
TCCCGGCGGCGCCGGCCGGAACCGGCATACCGCCGCGACGGCGTACACGCCTCGTCAGCGAATAA

Upstream 100 bases:

>100_bases
GGGCCTATCGCGATAAAAAAGAAAGATCTAATTCAATTTACAGTTAATTAGCACAACCTAAATAGCATCGGCCGAAAACC
AGCTGTTCGGGGGGGCGCAG

Downstream 100 bases:

>100_bases
TCCCAGCGAATGATCCTGGTCAGAGCGCCTTGGCGTTCTCCAGAAGCCGGCGGATATATTCGAGCGTCAGTTCGCGCTCG
AAAACCCGAAAACCTTTAAA

Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 794; Mature: 794

Protein sequence:

>794_residues
MFSVIACIRDNHDWRLVIVAAVVCLVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTGVWATHFIAMLAYDGGTPISY
ALDLTLLSFFLSVGGSWVAILAASQREARFSSTRGGALMALGIASMHLTGMQAIETQAVILYDSAMTLTAVVAGMLLSSA
AFHLFFNLKGMRRLLSASLVFVLAICTLHFMSMGSITLVPDPGKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSH
LTDLRGLANASQEGLLILREGRIIDVNERFQALSGWKLADLSGKAPSDVLTAIQAPRENRPGETLLNTRTGREIAVDVNS
SRIVYRGRDCEVLAVRDLTERKQAEEMIEHLAHHDVLTDLPNRSLFDTRIRQALQVAERKNTEVALFCLDLDRFKAVNDI
FGHAEGDRILRKVAAILRRVAGESDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIAL
YPRDGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQLHVSYQPILNAQSVEISGYEA
LMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACREAARWPQPLTIAVNVSPVQFMLPNLCERVEAVLDETGLAP
DRLELEITEAALIRDRDRVMATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRAII
GLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKPDIEPSMKPAVRKNVPAAPAGTGIPPRRRTRLVSE

Sequences:

>Translated_794_residues
MFSVIACIRDNHDWRLVIVAAVVCLVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTGVWATHFIAMLAYDGGTPISY
ALDLTLLSFFLSVGGSWVAILAASQREARFSSTRGGALMALGIASMHLTGMQAIETQAVILYDSAMTLTAVVAGMLLSSA
AFHLFFNLKGMRRLLSASLVFVLAICTLHFMSMGSITLVPDPGKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSH
LTDLRGLANASQEGLLILREGRIIDVNERFQALSGWKLADLSGKAPSDVLTAIQAPRENRPGETLLNTRTGREIAVDVNS
SRIVYRGRDCEVLAVRDLTERKQAEEMIEHLAHHDVLTDLPNRSLFDTRIRQALQVAERKNTEVALFCLDLDRFKAVNDI
FGHAEGDRILRKVAAILRRVAGESDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIAL
YPRDGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQLHVSYQPILNAQSVEISGYEA
LMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACREAARWPQPLTIAVNVSPVQFMLPNLCERVEAVLDETGLAP
DRLELEITEAALIRDRDRVMATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRAII
GLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKPDIEPSMKPAVRKNVPAAPAGTGIPPRRRTRLVSE
>Mature_794_residues
MFSVIACIRDNHDWRLVIVAAVVCLVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTGVWATHFIAMLAYDGGTPISY
ALDLTLLSFFLSVGGSWVAILAASQREARFSSTRGGALMALGIASMHLTGMQAIETQAVILYDSAMTLTAVVAGMLLSSA
AFHLFFNLKGMRRLLSASLVFVLAICTLHFMSMGSITLVPDPGKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSH
LTDLRGLANASQEGLLILREGRIIDVNERFQALSGWKLADLSGKAPSDVLTAIQAPRENRPGETLLNTRTGREIAVDVNS
SRIVYRGRDCEVLAVRDLTERKQAEEMIEHLAHHDVLTDLPNRSLFDTRIRQALQVAERKNTEVALFCLDLDRFKAVNDI
FGHAEGDRILRKVAAILRRVAGESDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIAL
YPRDGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQLHVSYQPILNAQSVEISGYEA
LMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACREAARWPQPLTIAVNVSPVQFMLPNLCERVEAVLDETGLAP
DRLELEITEAALIRDRDRVMATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRAII
GLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKPDIEPSMKPAVRKNVPAAPAGTGIPPRRRTRLVSE

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=35.8313817330211, Blast_Score=272, Evalue=8e-74,
Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=30.3529411764706, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=30.9859154929577, Blast_Score=197, Evalue=3e-51,
Organism=Escherichia coli, GI1787055, Length=398, Percent_Identity=29.8994974874372, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=30.952380952381, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1788502, Length=300, Percent_Identity=29.6666666666667, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788381, Length=411, Percent_Identity=28.4671532846715, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI87081980, Length=272, Percent_Identity=31.25, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI87081845, Length=274, Percent_Identity=31.021897810219, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1786507, Length=220, Percent_Identity=32.7272727272727, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=30.9917355371901, Blast_Score=108, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=451, Percent_Identity=23.5033259423503, Blast_Score=106, Evalue=7e-24,
Organism=Escherichia coli, GI1788849, Length=450, Percent_Identity=25.5555555555556, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI87081881, Length=267, Percent_Identity=29.5880149812734, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=36.1842105263158, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=32.2222222222222, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=28.4848484848485, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.8571428571429, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=32.3170731707317, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=34.3373493975904, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=32.1212121212121, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=30.8139534883721, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=156, Percent_Identity=28.8461538461538, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787056, Length=159, Percent_Identity=31.4465408805031, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 86669; Mature: 86669

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSVIACIRDNHDWRLVIVAAVVCLVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTG
CCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
VWATHFIAMLAYDGGTPISYALDLTLLSFFLSVGGSWVAILAASQREARFSSTRGGALMA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEEE
LGIASMHLTGMQAIETQAVILYDSAMTLTAVVAGMLLSSAAFHLFFNLKGMRRLLSASLV
HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVLAICTLHFMSMGSITLVPDPGKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSH
HHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTDLRGLANASQEGLLILREGRIIDVNERFQALSGWKLADLSGKAPSDVLTAIQAPRENR
HHHHHHHCCCCCCCEEEEECCCEEEHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCC
PGETLLNTRTGREIAVDVNSSRIVYRGRDCEVLAVRDLTERKQAEEMIEHLAHHDVLTDL
CCCHHHCCCCCCEEEEEECCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCC
PNRSLFDTRIRQALQVAERKNTEVALFCLDLDRFKAVNDIFGHAEGDRILRKVAAILRRV
CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AGESDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIAL
CCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
YPRDGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQL
ECCCCCHHHHHHCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
HVSYQPILNAQSVEISGYEALMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACR
CEEHHCCCCCCEEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
EAARWPQPLTIAVNVSPVQFMLPNLCERVEAVLDETGLAPDRLELEITEAALIRDRDRVM
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHH
ATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRAII
HHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHH
GLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKPDIEPSMKPAVRKNVPAAPAG
HCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHCCCCCCCCC
TGIPPRRRTRLVSE
CCCCCHHHHCCCCC
>Mature Secondary Structure
MFSVIACIRDNHDWRLVIVAAVVCLVGAMAAMLLYSRAQECDAGQRKLWIGASGFAFGTG
CCEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHH
VWATHFIAMLAYDGGTPISYALDLTLLSFFLSVGGSWVAILAASQREARFSSTRGGALMA
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCCCCEEEE
LGIASMHLTGMQAIETQAVILYDSAMTLTAVVAGMLLSSAAFHLFFNLKGMRRLLSASLV
HHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVLAICTLHFMSMGSITLVPDPGKAVPTLVLDTRVLAAIVVVAATALILVALAVVFVQSH
HHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTDLRGLANASQEGLLILREGRIIDVNERFQALSGWKLADLSGKAPSDVLTAIQAPRENR
HHHHHHHCCCCCCCEEEEECCCEEEHHHHHHHHCCCEEECCCCCCHHHHHHHHHCCCCCC
PGETLLNTRTGREIAVDVNSSRIVYRGRDCEVLAVRDLTERKQAEEMIEHLAHHDVLTDL
CCCHHHCCCCCCEEEEEECCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCC
PNRSLFDTRIRQALQVAERKNTEVALFCLDLDRFKAVNDIFGHAEGDRILRKVAAILRRV
CCCCHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AGESDTIARLGGDEFAIIQSDGQQPASAQKLAADIIDEFAAEMDTARDPTAVGVSLGIAL
CCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE
YPRDGSTAEELCNNADTALYRVKHDGRGRACFFDAEMDEAARNRRQIESDLRHAIIRNQL
ECCCCCHHHHHHCCCCCEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
HVSYQPILNAQSVEISGYEALMRWHRPGHGLTEPDIFIPVAEESGSIVQLGEWILQQACR
CEEHHCCCCCCEEEECHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
EAARWPQPLTIAVNVSPVQFMLPNLCERVEAVLDETGLAPDRLELEITEAALIRDRDRVM
HHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHH
ATLQRLRKLGVHIVMDDFGTGYSSLSNLRSFPFDKIKVDRSFTGVLEHDAAARSIVRAII
HHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHH
GLGHSLGMPVVTEGVETEMQRRIVVEEGCAQVQGLLLGKPDIEPSMKPAVRKNVPAAPAG
HCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHCCCCCCCCC
TGIPPRRRTRLVSE
CCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]