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The map label for this gene is mdcF [H]

Identifier: 209551657

GI number: 209551657

Start: 4260275

End: 4261222

Strand: Reverse

Name: mdcF [H]

Synonym: Rleg2_4086

Alternate gene names: 209551657

Gene position: 4261222-4260275 (Counterclockwise)

Preceding gene: 209551659

Following gene: 209551655

Centisome position: 93.9

GC content: 62.66

Gene sequence:

>948_bases
ATGTCAGCCATCATTCTAGACGTTCTTCCCATCTTCATCCTGATCCTCATCGGCTGGGTGATCGTCCGCAGCGGCTTGAT
GGCATCGAATGTCGGTGAAGCCCTCAGTGAATTCGTCTTCAAGATCGCCGTGCCGCTGCTGCTCTTCCGCACCATCGCCG
AGGCGGATTTTCACGGCGCCTCGCCTTTCCGGCTCTGGATCGTTTATTTCTCCGGCGTTGCCATTACCTGGGCGACCGGC
CATATCGCCGCCACGCGCCTCTTCGGCCGCGACGAACGGATCGGCGTGCTGGCCGGCGTTTCCTCGGCTTTCGCCAATAA
TATCTTCATCGGCCTGCCGCTGGTCGAGCGCACCGTCGGCGACGAAGGGCTGGTCGCGCTGTCGATCCTGCTTGCCGTGC
ATCTGCCGGTGATGATGGTCGCCGGCACGGTGTTGATGGAGCATGCCGAACGCAAGATCGCCGGCAAAAGCGATCGCAGC
ATGGTGCTGGTGCTTCGCCAAATCGCCGTCAATCTCGTGCGCAACCCACTGGTGATCGGGCTTGCGGCCGGCATGGCCAT
GCATCTTTCCGGCCTCACCATGCCGGTAACGCTCGAAACTGTCGTCAAGCAGATCGCCGGCATTGCCGGCCCGGCGGCGC
TGATCTCCCTCGGCATGGCGCTGGAGAAATACGGCATCTCCGGCAATCTCGGCATCGCCAGCGTCACATCGAGCTTGAAG
CTGCTGCTGCTGCCAGGCTGCGTGTGGGCGACGAGCCATCTCCTCGGCCTCAGCCCGGAATGGACGGCGGCGATTGTGCT
GACATCCTCGGTGCCCACAGGCGTCAACGCCTGGCTGATCGCCAACCGATTCGGCGTCGGCCATAGTATTGCTGCCTCGA
CGATCACGGTGACGACGGCGCTCGGCGCCATCACGGTCTCGCTCTGGGCCTATTTCCTGGGTGCCTAA

Upstream 100 bases:

>100_bases
GCATTTTCAAGGGCTGCATAATTTATCCTTAAATCGATTCCGATTTACCGAATTATGCGGTAGAGGTGCGACACTCCCCC
CGCGCAAAGCAGCCTCCCCC

Downstream 100 bases:

>100_bases
AGCGCATCACGATCTTACAGATTCGTTCCTTGCGCTTTAGGTCTTTATTTTCTCGCATGTCGTTGTCGCAAAACCGCTCT
ACACTTTTACGCGACATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MSAIILDVLPIFILILIGWVIVRSGLMASNVGEALSEFVFKIAVPLLLFRTIAEADFHGASPFRLWIVYFSGVAITWATG
HIAATRLFGRDERIGVLAGVSSAFANNIFIGLPLVERTVGDEGLVALSILLAVHLPVMMVAGTVLMEHAERKIAGKSDRS
MVLVLRQIAVNLVRNPLVIGLAAGMAMHLSGLTMPVTLETVVKQIAGIAGPAALISLGMALEKYGISGNLGIASVTSSLK
LLLLPGCVWATSHLLGLSPEWTAAIVLTSSVPTGVNAWLIANRFGVGHSIAASTITVTTALGAITVSLWAYFLGA

Sequences:

>Translated_315_residues
MSAIILDVLPIFILILIGWVIVRSGLMASNVGEALSEFVFKIAVPLLLFRTIAEADFHGASPFRLWIVYFSGVAITWATG
HIAATRLFGRDERIGVLAGVSSAFANNIFIGLPLVERTVGDEGLVALSILLAVHLPVMMVAGTVLMEHAERKIAGKSDRS
MVLVLRQIAVNLVRNPLVIGLAAGMAMHLSGLTMPVTLETVVKQIAGIAGPAALISLGMALEKYGISGNLGIASVTSSLK
LLLLPGCVWATSHLLGLSPEWTAAIVLTSSVPTGVNAWLIANRFGVGHSIAASTITVTTALGAITVSLWAYFLGA
>Mature_314_residues
SAIILDVLPIFILILIGWVIVRSGLMASNVGEALSEFVFKIAVPLLLFRTIAEADFHGASPFRLWIVYFSGVAITWATGH
IAATRLFGRDERIGVLAGVSSAFANNIFIGLPLVERTVGDEGLVALSILLAVHLPVMMVAGTVLMEHAERKIAGKSDRSM
VLVLRQIAVNLVRNPLVIGLAAGMAMHLSGLTMPVTLETVVKQIAGIAGPAALISLGMALEKYGISGNLGIASVTSSLKL
LLLPGCVWATSHLLGLSPEWTAAIVLTSSVPTGVNAWLIANRFGVGHSIAASTITVTTALGAITVSLWAYFLGA

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33040; Mature: 32909

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIILDVLPIFILILIGWVIVRSGLMASNVGEALSEFVFKIAVPLLLFRTIAEADFHGA
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SPFRLWIVYFSGVAITWATGHIAATRLFGRDERIGVLAGVSSAFANNIFIGLPLVERTVG
CHHEEEEEEECCEEEEEECCHHHHHHHCCCCCCEEHHHHHHHHHHCCEEEECCHHHHHCC
DEGLVALSILLAVHLPVMMVAGTVLMEHAERKIAGKSDRSMVLVLRQIAVNLVRNPLVIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH
LAAGMAMHLSGLTMPVTLETVVKQIAGIAGPAALISLGMALEKYGISGNLGIASVTSSLK
HHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LLLLPGCVWATSHLLGLSPEWTAAIVLTSSVPTGVNAWLIANRFGVGHSIAASTITVTTA
HHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
LGAITVSLWAYFLGA
HHHHHHHHHHHHHCC
>Mature Secondary Structure 
SAIILDVLPIFILILIGWVIVRSGLMASNVGEALSEFVFKIAVPLLLFRTIAEADFHGA
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
SPFRLWIVYFSGVAITWATGHIAATRLFGRDERIGVLAGVSSAFANNIFIGLPLVERTVG
CHHEEEEEEECCEEEEEECCHHHHHHHCCCCCCEEHHHHHHHHHHCCEEEECCHHHHHCC
DEGLVALSILLAVHLPVMMVAGTVLMEHAERKIAGKSDRSMVLVLRQIAVNLVRNPLVIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHH
LAAGMAMHLSGLTMPVTLETVVKQIAGIAGPAALISLGMALEKYGISGNLGIASVTSSLK
HHHHHHHHHCCCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LLLLPGCVWATSHLLGLSPEWTAAIVLTSSVPTGVNAWLIANRFGVGHSIAASTITVTTA
HHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
LGAITVSLWAYFLGA
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]