| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is glcB [H]
Identifier: 209551557
GI number: 209551557
Start: 4137907
End: 4140078
Strand: Direct
Name: glcB [H]
Synonym: Rleg2_3986
Alternate gene names: 209551557
Gene position: 4137907-4140078 (Clockwise)
Preceding gene: 209551556
Following gene: 209551559
Centisome position: 91.18
GC content: 61.79
Gene sequence:
>2172_bases ATGAGCCGCATTGATAAGAACGGTCTTGCCATCGAAGCCGTCCTTCATGATTTCCTCGTCCAGGAGGTTCTGCCGGGTCT GGCGATCGATGCGGACAAGTTCTTTGCCGATTTTTCGGCGATCGTCCACGATCTCGCCCCGAAGAATCGCGCCCTGCTGG CAAGACGCGACGAGCTGGAGGTCAAGATCGACGACTGGTATCGCCAGCACGGCGCGCCGGCGGATATGGACGACTACCAA TCCTTCCTGCGCGGGATCGGTTATCTCCTGCCGGAAGGATCGGACTTCCAGGTTTCGACCCAAAATGTCGACCCCGAGAT CGCCTCGATCGCCGGCCCGCAGCTCGTCGTTCCCGTCATGAATGCCCGTTATGCACTCAACGCCGCCAACGCCCGCTGGG GCTCGCTCTATGATGCGCTCTATGGCACGGACGCCATTCCCGAGACCGACGGCGCGGAAAAGGGCAGGGGCTACAATCCG AAGCGCGGCGAGAAGGTTATCGCCTGGGTACGCGATTTCCTCGATATGTCGGTACCTTTGCAAGACAGCAGCTGGAAGAA TGTCGGCAACTTCACCGTCAAGGATGGGATACTTGTCATCAGATCGGTCGATGGCGAGCAGGCCATGCTTGTCGATGGCG GGCATTTTGCCGGCTATCGCGGCGATGCTGCCGCCCCGACGCATATTCTCCTGAAGAACAACGGCATCCATATCAAGATC GTCATCGATGCGACGACGGCGATCGGCAAGACCGATCCGGCCCATATTTCCGATGTCTGGCTGGAATCGGCGATCACCAC GATCATGGACTGTGAGGATTCGATTGCCGCCGTCGATGCCGAGGACAAGACTGTCGTTTACCGCAACTGGCTCGGCCTGA TGAAGGGCGACCTGCAGGAAGAGGTGGTAAAGGGCGGAACGAGCTTCGTCCGTAAGCTCAACCCGGATCTGGACTATACC GGTCCGGATGGCACCGTCTTCGAACTGCATCGCCGTTCGCTGATGCTGGTGCGCAATGTCGGCCACCTGATGACCAACCC GGCGATCCTCGACCGCGACGGTGCCGAAGTGCCGGAGGGCATCCTGGATGCCGTCATCACCGGCCTGATCGCGCTTTACG ATATCGGCCCGGCCGGCCGGAGGAAGAATTCCCGCACCGGTTCCATGTATGTGGTCAAGCCGAAGATGCATGGACCGGAA GAGGTGGCCTTCGCCGTCGAGATCTTTTCGCGGGTCGAAGATGCGCTTGGCATGGCGCGCAACACCATCAAGATGGGCAT CATGGATGAGGAGCGCCGCACGACGGTCAATCTCAAGGAATGCATCCGTGCTGCCCGCGAGCGGGTCGTCTTCATCAATA CCGGCTTCCTCGACCGCACCGGCGACGAGATCCACACCTCGATGGAGGCCGGCCCGATGATTCGCAAGGGCGACATGCGC CAGGCAGCCTGGATATCGGCCTATGAGAACTGGAACGTCGACATCGGCCTGGAATGCGGCCTCGCCGGCCACGCCCAGAT CGGCAAGGGCATGTGGGCAATGCCGGATCTGATGGCGGCGATGCTGGAGCAGAAGATCGCCCATCCGAAGGCCGGTGCCA ACACCGCCTGGGTCCCGTCGCCGACCGCCGCGACCCTGCACGCCACCCATTATCACCGGGTCAATGTCGCCAGGGTTCAG CAGGGGCTGAAGGACCGCGCCCGCGCCAAGCTCTCCGACATTCTCTCCGTGCCGGTCGCGGTACGGCCGAACTGGACGCC GGAGGAAATCCAGCGCGAGCTTGATAACAATGCCCAGGGCATCCTCGGCTACGTCGTACGCTGGGTCGATCAGGGCGTCG GCTGCTCGAAGGTGCCCGATATCAACAATGTCGGCCTGATGGAGGATCGCGCCACATTGCGCATCTCGGCCCAGCACATG GCGAACTGGCTGCATCACCAGGTCGTCACCGAGGCTCAGATCGTCGAAACCATGAAGCGCATGGCCGCCGTCGTCGACCG GCAGAACGAGGCGGATCCTCTCTACCAGCCGATGGCCGGTAATTTCGACGGATCGATCGCCTTCCAGGCCGCCCTCGACC TCGTGCTGAAGGGCAGGGAGCAGCCGAACGGCTATACCGAGCCAGTGCTTCATCGCCGCCGCCTCGAGCTGAAGGCGAAG CAGGCCGGTTGA
Upstream 100 bases:
>100_bases TCCCGATAAGCATAAATCTTTCAAATTATTGCGGAATTGACTGTGAATGAAAGCCGGGCAAAGTGGCAGCATTCAAAGTC GTTGCCAGGGAGAATGTCGC
Downstream 100 bases:
>100_bases GAGTATCGTTTTGAATATGAAAAGGCCGCCGAGACGACAGTCCGGCGGCCTTTTTTATACCGAATTCGATATCTACTTTA CTGGATGACGACGACCTTGG
Product: malate synthase G
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 723; Mature: 722
Protein sequence:
>723_residues MSRIDKNGLAIEAVLHDFLVQEVLPGLAIDADKFFADFSAIVHDLAPKNRALLARRDELEVKIDDWYRQHGAPADMDDYQ SFLRGIGYLLPEGSDFQVSTQNVDPEIASIAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKGRGYNP KRGEKVIAWVRDFLDMSVPLQDSSWKNVGNFTVKDGILVIRSVDGEQAMLVDGGHFAGYRGDAAAPTHILLKNNGIHIKI VIDATTAIGKTDPAHISDVWLESAITTIMDCEDSIAAVDAEDKTVVYRNWLGLMKGDLQEEVVKGGTSFVRKLNPDLDYT GPDGTVFELHRRSLMLVRNVGHLMTNPAILDRDGAEVPEGILDAVITGLIALYDIGPAGRRKNSRTGSMYVVKPKMHGPE EVAFAVEIFSRVEDALGMARNTIKMGIMDEERRTTVNLKECIRAARERVVFINTGFLDRTGDEIHTSMEAGPMIRKGDMR QAAWISAYENWNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHRVNVARVQ QGLKDRARAKLSDILSVPVAVRPNWTPEEIQRELDNNAQGILGYVVRWVDQGVGCSKVPDINNVGLMEDRATLRISAQHM ANWLHHQVVTEAQIVETMKRMAAVVDRQNEADPLYQPMAGNFDGSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKAK QAG
Sequences:
>Translated_723_residues MSRIDKNGLAIEAVLHDFLVQEVLPGLAIDADKFFADFSAIVHDLAPKNRALLARRDELEVKIDDWYRQHGAPADMDDYQ SFLRGIGYLLPEGSDFQVSTQNVDPEIASIAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKGRGYNP KRGEKVIAWVRDFLDMSVPLQDSSWKNVGNFTVKDGILVIRSVDGEQAMLVDGGHFAGYRGDAAAPTHILLKNNGIHIKI VIDATTAIGKTDPAHISDVWLESAITTIMDCEDSIAAVDAEDKTVVYRNWLGLMKGDLQEEVVKGGTSFVRKLNPDLDYT GPDGTVFELHRRSLMLVRNVGHLMTNPAILDRDGAEVPEGILDAVITGLIALYDIGPAGRRKNSRTGSMYVVKPKMHGPE EVAFAVEIFSRVEDALGMARNTIKMGIMDEERRTTVNLKECIRAARERVVFINTGFLDRTGDEIHTSMEAGPMIRKGDMR QAAWISAYENWNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHRVNVARVQ QGLKDRARAKLSDILSVPVAVRPNWTPEEIQRELDNNAQGILGYVVRWVDQGVGCSKVPDINNVGLMEDRATLRISAQHM ANWLHHQVVTEAQIVETMKRMAAVVDRQNEADPLYQPMAGNFDGSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKAK QAG >Mature_722_residues SRIDKNGLAIEAVLHDFLVQEVLPGLAIDADKFFADFSAIVHDLAPKNRALLARRDELEVKIDDWYRQHGAPADMDDYQS FLRGIGYLLPEGSDFQVSTQNVDPEIASIAGPQLVVPVMNARYALNAANARWGSLYDALYGTDAIPETDGAEKGRGYNPK RGEKVIAWVRDFLDMSVPLQDSSWKNVGNFTVKDGILVIRSVDGEQAMLVDGGHFAGYRGDAAAPTHILLKNNGIHIKIV IDATTAIGKTDPAHISDVWLESAITTIMDCEDSIAAVDAEDKTVVYRNWLGLMKGDLQEEVVKGGTSFVRKLNPDLDYTG PDGTVFELHRRSLMLVRNVGHLMTNPAILDRDGAEVPEGILDAVITGLIALYDIGPAGRRKNSRTGSMYVVKPKMHGPEE VAFAVEIFSRVEDALGMARNTIKMGIMDEERRTTVNLKECIRAARERVVFINTGFLDRTGDEIHTSMEAGPMIRKGDMRQ AAWISAYENWNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPSPTAATLHATHYHRVNVARVQQ GLKDRARAKLSDILSVPVAVRPNWTPEEIQRELDNNAQGILGYVVRWVDQGVGCSKVPDINNVGLMEDRATLRISAQHMA NWLHHQVVTEAQIVETMKRMAAVVDRQNEADPLYQPMAGNFDGSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKAKQ AG
Specific function: Accounts For Almost The Entire Malate-Synthesizing Activity In Cells Metabolizing Glyoxylate. [C]
COG id: COG2225
COG function: function code C; Malate synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malate synthase family. GlcB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789348, Length=721, Percent_Identity=61.1650485436893, Blast_Score=892, Evalue=0.0, Organism=Caenorhabditis elegans, GI17561814, Length=315, Percent_Identity=25.0793650793651, Blast_Score=77, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011076 - InterPro: IPR001465 - InterPro: IPR006253 [H]
Pfam domain/function: PF01274 Malate_synthase [H]
EC number: =2.3.3.9 [H]
Molecular weight: Translated: 79710; Mature: 79579
Theoretical pI: Translated: 5.82; Mature: 5.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIDKNGLAIEAVLHDFLVQEVLPGLAIDADKFFADFSAIVHDLAPKNRALLARRDELE CCCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCE VKIDDWYRQHGAPADMDDYQSFLRGIGYLLPEGSDFQVSTQNVDPEIASIAGPQLVVPVM EEEHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCCEEEEEEC NARYALNAANARWGSLYDALYGTDAIPETDGAEKGRGYNPKRGEKVIAWVRDFLDMSVPL CCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC QDSSWKNVGNFTVKDGILVIRSVDGEQAMLVDGGHFAGYRGDAAAPTHILLKNNGIHIKI CCCCCCCCCCEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEE VIDATTAIGKTDPAHISDVWLESAITTIMDCEDSIAAVDAEDKTVVYRNWLGLMKGDLQE EEEECHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEHHHHHHHHHCHHHH EVVKGGTSFVRKLNPDLDYTGPDGTVFELHRRSLMLVRNVGHLMTNPAILDRDGAEVPEG HHHHCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHH ILDAVITGLIALYDIGPAGRRKNSRTGSMYVVKPKMHGPEEVAFAVEIFSRVEDALGMAR HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH NTIKMGIMDEERRTTVNLKECIRAARERVVFINTGFLDRTGDEIHTSMEAGPMIRKGDMR HHEEECCCCCHHHCEECHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCH QAAWISAYENWNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPS HHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC PTAATLHATHYHRVNVARVQQGLKDRARAKLSDILSVPVAVRPNWTPEEIQRELDNNAQG CCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHCCCHHH ILGYVVRWVDQGVGCSKVPDINNVGLMEDRATLRISAQHMANWLHHQVVTEAQIVETMKR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH MAAVVDRQNEADPLYQPMAGNFDGSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKAK HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC QAG CCC >Mature Secondary Structure SRIDKNGLAIEAVLHDFLVQEVLPGLAIDADKFFADFSAIVHDLAPKNRALLARRDELE CCCCCCCCHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCE VKIDDWYRQHGAPADMDDYQSFLRGIGYLLPEGSDFQVSTQNVDPEIASIAGPQLVVPVM EEEHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHCCCEEEEEEC NARYALNAANARWGSLYDALYGTDAIPETDGAEKGRGYNPKRGEKVIAWVRDFLDMSVPL CCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC QDSSWKNVGNFTVKDGILVIRSVDGEQAMLVDGGHFAGYRGDAAAPTHILLKNNGIHIKI CCCCCCCCCCEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEE VIDATTAIGKTDPAHISDVWLESAITTIMDCEDSIAAVDAEDKTVVYRNWLGLMKGDLQE EEEECHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEHHHHHHHHHCHHHH EVVKGGTSFVRKLNPDLDYTGPDGTVFELHRRSLMLVRNVGHLMTNPAILDRDGAEVPEG HHHHCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHH ILDAVITGLIALYDIGPAGRRKNSRTGSMYVVKPKMHGPEEVAFAVEIFSRVEDALGMAR HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH NTIKMGIMDEERRTTVNLKECIRAARERVVFINTGFLDRTGDEIHTSMEAGPMIRKGDMR HHEEECCCCCHHHCEECHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCH QAAWISAYENWNVDIGLECGLAGHAQIGKGMWAMPDLMAAMLEQKIAHPKAGANTAWVPS HHHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC PTAATLHATHYHRVNVARVQQGLKDRARAKLSDILSVPVAVRPNWTPEEIQRELDNNAQG CCCCEEEECHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHCCCHHH ILGYVVRWVDQGVGCSKVPDINNVGLMEDRATLRISAQHMANWLHHQVVTEAQIVETMKR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHH MAAVVDRQNEADPLYQPMAGNFDGSIAFQAALDLVLKGREQPNGYTEPVLHRRRLELKAK HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC QAG CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA