| Definition | Rhizobium leguminosarum bv. trifolii WSM2304 chromosome, complete genome. |
|---|---|
| Accession | NC_011369 |
| Length | 4,537,948 |
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The map label for this gene is yebQ [C]
Identifier: 209551382
GI number: 209551382
Start: 3943488
End: 3945026
Strand: Direct
Name: yebQ [C]
Synonym: Rleg2_3811
Alternate gene names: 209551382
Gene position: 3943488-3945026 (Clockwise)
Preceding gene: 209551377
Following gene: 209551383
Centisome position: 86.9
GC content: 63.29
Gene sequence:
>1539_bases ATGGACATGCAACTCGCGCCTCAGCCGCTCGTGACGGATCCTCGTCGCCGGCTTATCCTCTTCTTCTTCCTGATGACAGC CATGTTCATGGCGACGCTCGATAATCAGATCGTTTCGACGGCGCTGCCGACGATCGTCGGCGAATTCGGCCATCTCGAGC GTTTCGGCTGGATCGGCTCGGCCTATCTCCTGGCGCTCAGCGCCGTCATGCCGCTCTATGGCAAGCTCGGCGATCTCTTC GGTCGCAAATATGTGATGATGACGGCGATCATGATTTTCACCGCCGGCTCGGCGGTCTGCGGCCTCGCGGTCTCGATGAA CACGCTGATCGCCGCCCGTGTGCTGCAGGGTCTCGGCGGCGGCGGCATCATGGTGTCGATCTTCGCCGTCAATGCCGATC TGTTCGAGCCGCGCGAGCGGGCGCGTTACCAGAGTTATTCCAGCCTCGTGCTGATGGCGTCGGGCGCGATCGGTCCGGTG CTCGGCGGCACGATGAGCGACCTTTTCGGCTGGCGTTCGATTTTCCTCGTCAACGTGCCGATCGGCCTGATCGCGCTTGC CGGCCTTGCCGTGATGTTGCCCTATCGCAAGCCGCATCGCCGCCCGAGGATCGATTATGCCGGTGCGCTGCTGCTCGCCC TGACGACGACCAGTATCGTGCTTGCCACCGACAGCAGCGAACTGTTCGGCGCATTGGTCTCGCCGCAGAGTATCGGCATC GTCGCCTTCGGCGTCGTCTGCGCCGTCACCTGGGTATTCGTCGAGCGCCGCGCGCCGGAGCCGATCGTACCGCTGGAGCT CTTTCGTAATTCGACCTTCAACCTGCTCCTGGTGATCTCGATCATGGGCGGCGCCATCGCCATCGGCATGGTCAATTACC TCGCGCTCTTTCTGCAGACCACCACCGGCCTTTCGCCCTCTGCCGCCGGCCTTCTCTTCATCCTTCTGACGGGCGGCCTC GTCTGCGGGTCGCTGTCCGCAGGCCGCATTATCTCAAAAACGGGCCGCTACAAGCCCTTCGCCGTTGCAAGCCTGACCTG CAGCGCCATCGCCTTCGCATTGATGTCGCAGATCCATGCGGGAACGCCGATCGCCTTCATCGGCGCGATTATGATGCTGC ATGGCATCGGCATCGGCCTTGCCCAGCAGGTTCCCGTCATCGGCGTGCAGAATGCAGCACCGGCCCGCGACGTCGGCGCC GCCACCGGGTCGGTGACGCTGTCGCGCATGGGAGGCGCGTCGATCGCTATCTCCATCTATGGCGCCATCATCGCCTCTCA GCTTAACAAGGTCGGCGTGTCCATTCCCGGTGTCGCCGATATCGAGCAGCTGACGCCGAAGATGATGGCTTCCCTTCCCG AAGCAAGCCGCCAGTCTGTCGCCGATCTCTATGCCGCCGCCTTCTCGCCGCTCTTCATGACCGCCTGCGCCATTGCGCTG ATCGGCCTTGTGGCCGCTCTCATGCTGAAGCCGGTGCAACTACCCCGCGCCGGCGAGACTTTAAGACCACAACCGACGAC GGCCGAAGCCGCGGAATAA
Upstream 100 bases:
>100_bases GAGCCGTTTCGGATTTTGAATATGCCGATGTCATTAATGTGCCATTGACAAATATATGCTGTCAGCACATAAAAGGCGAC CAACCCGGAATGATGCTCCC
Downstream 100 bases:
>100_bases CGAATCGGGGCCGATACCCCATCAGAAGGCGTTTCTTTTGGGTCACAACTATCAAAGATTGCACTTTTCTCGTTTAGCCT CCGTCATCGGCTCGATTGCT
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 512; Mature: 512
Protein sequence:
>512_residues MDMQLAPQPLVTDPRRRLILFFFLMTAMFMATLDNQIVSTALPTIVGEFGHLERFGWIGSAYLLALSAVMPLYGKLGDLF GRKYVMMTAIMIFTAGSAVCGLAVSMNTLIAARVLQGLGGGGIMVSIFAVNADLFEPRERARYQSYSSLVLMASGAIGPV LGGTMSDLFGWRSIFLVNVPIGLIALAGLAVMLPYRKPHRRPRIDYAGALLLALTTTSIVLATDSSELFGALVSPQSIGI VAFGVVCAVTWVFVERRAPEPIVPLELFRNSTFNLLLVISIMGGAIAIGMVNYLALFLQTTTGLSPSAAGLLFILLTGGL VCGSLSAGRIISKTGRYKPFAVASLTCSAIAFALMSQIHAGTPIAFIGAIMMLHGIGIGLAQQVPVIGVQNAAPARDVGA ATGSVTLSRMGGASIAISIYGAIIASQLNKVGVSIPGVADIEQLTPKMMASLPEASRQSVADLYAAAFSPLFMTACAIAL IGLVAALMLKPVQLPRAGETLRPQPTTAEAAE
Sequences:
>Translated_512_residues MDMQLAPQPLVTDPRRRLILFFFLMTAMFMATLDNQIVSTALPTIVGEFGHLERFGWIGSAYLLALSAVMPLYGKLGDLF GRKYVMMTAIMIFTAGSAVCGLAVSMNTLIAARVLQGLGGGGIMVSIFAVNADLFEPRERARYQSYSSLVLMASGAIGPV LGGTMSDLFGWRSIFLVNVPIGLIALAGLAVMLPYRKPHRRPRIDYAGALLLALTTTSIVLATDSSELFGALVSPQSIGI VAFGVVCAVTWVFVERRAPEPIVPLELFRNSTFNLLLVISIMGGAIAIGMVNYLALFLQTTTGLSPSAAGLLFILLTGGL VCGSLSAGRIISKTGRYKPFAVASLTCSAIAFALMSQIHAGTPIAFIGAIMMLHGIGIGLAQQVPVIGVQNAAPARDVGA ATGSVTLSRMGGASIAISIYGAIIASQLNKVGVSIPGVADIEQLTPKMMASLPEASRQSVADLYAAAFSPLFMTACAIAL IGLVAALMLKPVQLPRAGETLRPQPTTAEAAE >Mature_512_residues MDMQLAPQPLVTDPRRRLILFFFLMTAMFMATLDNQIVSTALPTIVGEFGHLERFGWIGSAYLLALSAVMPLYGKLGDLF GRKYVMMTAIMIFTAGSAVCGLAVSMNTLIAARVLQGLGGGGIMVSIFAVNADLFEPRERARYQSYSSLVLMASGAIGPV LGGTMSDLFGWRSIFLVNVPIGLIALAGLAVMLPYRKPHRRPRIDYAGALLLALTTTSIVLATDSSELFGALVSPQSIGI VAFGVVCAVTWVFVERRAPEPIVPLELFRNSTFNLLLVISIMGGAIAIGMVNYLALFLQTTTGLSPSAAGLLFILLTGGL VCGSLSAGRIISKTGRYKPFAVASLTCSAIAFALMSQIHAGTPIAFIGAIMMLHGIGIGLAQQVPVIGVQNAAPARDVGA ATGSVTLSRMGGASIAISIYGAIIASQLNKVGVSIPGVADIEQLTPKMMASLPEASRQSVADLYAAAFSPLFMTACAIAL IGLVAALMLKPVQLPRAGETLRPQPTTAEAAE
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=436, Percent_Identity=26.3761467889908, Blast_Score=116, Evalue=3e-27, Organism=Escherichia coli, GI1790195, Length=424, Percent_Identity=27.122641509434, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1788392, Length=342, Percent_Identity=34.5029239766082, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1789042, Length=287, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1788710, Length=289, Percent_Identity=27.3356401384083, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1790146, Length=178, Percent_Identity=30.8988764044944, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323735, Length=328, Percent_Identity=29.5731707317073, Blast_Score=124, Evalue=4e-29, Organism=Saccharomyces cerevisiae, GI6319770, Length=422, Percent_Identity=26.303317535545, Blast_Score=99, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6322958, Length=177, Percent_Identity=31.0734463276836, Blast_Score=99, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6325455, Length=168, Percent_Identity=31.547619047619, Blast_Score=95, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6321663, Length=152, Percent_Identity=34.8684210526316, Blast_Score=89, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6320324, Length=185, Percent_Identity=28.6486486486486, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6324954, Length=400, Percent_Identity=22.5, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001958 - InterPro: IPR011991 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 53631; Mature: 53631
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMQLAPQPLVTDPRRRLILFFFLMTAMFMATLDNQIVSTALPTIVGEFGHLERFGWIGS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYLLALSAVMPLYGKLGDLFGRKYVMMTAIMIFTAGSAVCGLAVSMNTLIAARVLQGLGG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC GGIMVSIFAVNADLFEPRERARYQSYSSLVLMASGAIGPVLGGTMSDLFGWRSIFLVNVP CCEEEEEEEECCHHCCHHHHHHHHHHHCEEEEECCCCHHHHCCHHHHHHHHHHEEEEECC IGLIALAGLAVMLPYRKPHRRPRIDYAGALLLALTTTSIVLATDSSELFGALVSPQSIGI HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCHHHHHHHCCCCCCHH VAFGVVCAVTWVFVERRAPEPIVPLELFRNSTFNLLLVISIMGGAIAIGMVNYLALFLQT HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TTGLSPSAAGLLFILLTGGLVCGSLSAGRIISKTGRYKPFAVASLTCSAIAFALMSQIHA HCCCCCHHHHHHHHHHHCCHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC GTPIAFIGAIMMLHGIGIGLAQQVPVIGVQNAAPARDVGAATGSVTLSRMGGASIAISIY CCCHHHHHHHHHHHHCCCCHHCCCCEEECCCCCCCHHHCCCCCCEEHHHCCCCEEHHHHH GAIIASQLNKVGVSIPGVADIEQLTPKMMASLPEASRQSVADLYAAAFSPLFMTACAIAL HHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IGLVAALMLKPVQLPRAGETLRPQPTTAEAAE HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDMQLAPQPLVTDPRRRLILFFFLMTAMFMATLDNQIVSTALPTIVGEFGHLERFGWIGS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYLLALSAVMPLYGKLGDLFGRKYVMMTAIMIFTAGSAVCGLAVSMNTLIAARVLQGLGG HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC GGIMVSIFAVNADLFEPRERARYQSYSSLVLMASGAIGPVLGGTMSDLFGWRSIFLVNVP CCEEEEEEEECCHHCCHHHHHHHHHHHCEEEEECCCCHHHHCCHHHHHHHHHHEEEEECC IGLIALAGLAVMLPYRKPHRRPRIDYAGALLLALTTTSIVLATDSSELFGALVSPQSIGI HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCEEEEEECCHHHHHHHCCCCCCHH VAFGVVCAVTWVFVERRAPEPIVPLELFRNSTFNLLLVISIMGGAIAIGMVNYLALFLQT HHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH TTGLSPSAAGLLFILLTGGLVCGSLSAGRIISKTGRYKPFAVASLTCSAIAFALMSQIHA HCCCCCHHHHHHHHHHHCCHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC GTPIAFIGAIMMLHGIGIGLAQQVPVIGVQNAAPARDVGAATGSVTLSRMGGASIAISIY CCCHHHHHHHHHHHHCCCCHHCCCCEEECCCCCCCHHHCCCCCCEEHHHCCCCEEHHHHH GAIIASQLNKVGVSIPGVADIEQLTPKMMASLPEASRQSVADLYAAAFSPLFMTACAIAL HHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IGLVAALMLKPVQLPRAGETLRPQPTTAEAAE HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]