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The map label for this gene is yddA [H]

Identifier: 209551377

GI number: 209551377

Start: 3937567

End: 3939432

Strand: Direct

Name: yddA [H]

Synonym: Rleg2_3806

Alternate gene names: 209551377

Gene position: 3937567-3939432 (Clockwise)

Preceding gene: 209551370

Following gene: 209551382

Centisome position: 86.77

GC content: 62.06

Gene sequence:

>1866_bases
ATGGCAGATAAGAGCGAGGGGAGGCCGGGCATCCGAAGGCAGGATAGGGTAGGCTATGATCTCAGCCTGACTGACCGCCT
CGGGGTGATGTTCTCAGCATTCTGGAATTCGCAAGTGCGTGGCAAGGTGCTGTTTCTGGCGACCGTGCTGATCCTCGTCA
TCCTGGCGACGTCCTACGGCCAGGTCATCCTCAATAAGTGGAATGCTCCCTTCTACGATTCGCTGGAGCGCCGCGACCTC
GGGGAATTCTTCCACCAGCTCGAAATCTTCGCGATGATCGCCGGCACGCTGCTGCTGCTCAATGTGCTGCAGGCATGGCT
GAATCAGATGACCGCGCTCTATATGCGCGAGGGCCTGTCGCGCGACCTCGTCGATCAGTGGCTGAAGCGCAAGCGGGCGC
TGCGGCTTGCCTCCAGCGGCCTGATCGGCGTCAATCCGGACCAGCGCCTGCACGAGGATTCCCGCAATCTCGCCGAAAGC
ACGACAGGGCTCGTTCTCGGCCTGCTGCAGTCGACCATTCTTCTTGTAAGCTTCATCGGCGTGCTCTGGGAGCTTTCCAG
CGGCTTCATCTTCCACATCAGCGGCCACAGCTTCTCCATTCCCGGCTATATGGTCTGGGCAGCGATTTTCTACGCCGCCT
CCGCCTCGGTGCTGAGCCAGGTCGTCGGCCGCAAGCTGGTGAAGCTCAATGCTGACCGCTTCTCGAAGGAGGCTGAGCTT
CGCTTCACGCTGATGCATGCCAACGAGAACATGCCGGCGATCACCGTTGCCCGCGGCGAGGAGAACGAACGCCGGCGCAT
CAACACCGACATCAGCTCGGTGCTGAGGGTGGTCAAGCGGCTCGCCATGGCCAATACCAACCTCACCTGGGTTTCGGCCG
GCTACGGCTGGCTGGTCATCGTCATTCCGATCATCGTCGCAGCACCCGCCTATTTCTCCGGCGGCCTCACGCTTGGTCAG
CTGATGATGTCGGTCGGCGCCTTCAACCAGGTCAACACGGCGCTACGCTGGTATGTCGCCAATTTCGGTCCGATCGCCGA
ATGGCGCGCCACGCTGATGCGCGTCACCGATTTCCGTCAGGCGCTGCTCGACATGGAAGAGGAATTCGCCCTGAAGGACG
GCATCGCCTATGAAAACACCGCGCCCGATACGCTGACATTGAAGGATGTGGTGATCGTCGCCAAGATCGGTGAAGAGATC
GACGAATGCGGCGGCTTCCGCCTGCGCGAAACCGATGTCGTGATCAAATCAGGCGAAAAGATCATGATCAACGGCGATCA
CAGCGTCAACCGCAAGCTGCTCTTCCAGGCGATGGCCGGCCTCTGGCCGTGCGGCAGCGGCACGATGGGCCTGCCGCCGG
TCGACGACATGCTGTTCGTCCCGCAGATCGCCTATATTCCCGGCGGCACGCTGCGTGAGGCGCTGGCCTTTCCCGAAAGC
CCCGATGCCTATGAGAAAGCCGCCGTCGAGGCAGCCCTCGACAAGGCCGGCCTGCATTCGCTGATATCAAGGCTCGATAC
CCGCGCCCGCTGGGACAAACTGCTCGACAGCGACGAACAAAAGGCAATCGGCTTCGCCCGCCTGCTTCTCGCACGGCCGC
GCTGGATCATTTTCGACGAAGTGCTTGAGGGCATGGAGCCGGAATGGCAGGAGACAATGGCCGGGCTGCTCACCTCCATG
CCGGAAAGCGGCATGATCTATATCGGCCGTTCCGAGGCCTATCTCGAGGCATTGAAGCCGCGCGTGCTGCATCTGCAGGC
GCTGCCGGCAAAATCCGAGGAACCGCAGCAGCAACAGCAGCAAGTAACCCGTACCGGCGCCAGCGCCGCCACGGGTGCCG
CCGCCATGCCCGCGCCGGCGCTGTAG

Upstream 100 bases:

>100_bases
GCAAGCATCATCACAGTTTAATGACTGATAGAATCTGTTGATAGACCGGTAACGCCACCATGTTAATAATGGTAAGCATG
GGCGATGTTGGAAAAGCGTG

Downstream 100 bases:

>100_bases
AGCGCCGCACCGACAGACGCTACATCCCTTCGAATTTCACGTATGGTCACATCGGCGGCGTGATTCCGTTGAGGCCGACG
GCCACCTGGCTGGCCGAAAT

Product: ABC transporter

Products: NA

Alternate protein names: CDS102 [H]

Number of amino acids: Translated: 621; Mature: 620

Protein sequence:

>621_residues
MADKSEGRPGIRRQDRVGYDLSLTDRLGVMFSAFWNSQVRGKVLFLATVLILVILATSYGQVILNKWNAPFYDSLERRDL
GEFFHQLEIFAMIAGTLLLLNVLQAWLNQMTALYMREGLSRDLVDQWLKRKRALRLASSGLIGVNPDQRLHEDSRNLAES
TTGLVLGLLQSTILLVSFIGVLWELSSGFIFHISGHSFSIPGYMVWAAIFYAASASVLSQVVGRKLVKLNADRFSKEAEL
RFTLMHANENMPAITVARGEENERRRINTDISSVLRVVKRLAMANTNLTWVSAGYGWLVIVIPIIVAAPAYFSGGLTLGQ
LMMSVGAFNQVNTALRWYVANFGPIAEWRATLMRVTDFRQALLDMEEEFALKDGIAYENTAPDTLTLKDVVIVAKIGEEI
DECGGFRLRETDVVIKSGEKIMINGDHSVNRKLLFQAMAGLWPCGSGTMGLPPVDDMLFVPQIAYIPGGTLREALAFPES
PDAYEKAAVEAALDKAGLHSLISRLDTRARWDKLLDSDEQKAIGFARLLLARPRWIIFDEVLEGMEPEWQETMAGLLTSM
PESGMIYIGRSEAYLEALKPRVLHLQALPAKSEEPQQQQQQVTRTGASAATGAAAMPAPAL

Sequences:

>Translated_621_residues
MADKSEGRPGIRRQDRVGYDLSLTDRLGVMFSAFWNSQVRGKVLFLATVLILVILATSYGQVILNKWNAPFYDSLERRDL
GEFFHQLEIFAMIAGTLLLLNVLQAWLNQMTALYMREGLSRDLVDQWLKRKRALRLASSGLIGVNPDQRLHEDSRNLAES
TTGLVLGLLQSTILLVSFIGVLWELSSGFIFHISGHSFSIPGYMVWAAIFYAASASVLSQVVGRKLVKLNADRFSKEAEL
RFTLMHANENMPAITVARGEENERRRINTDISSVLRVVKRLAMANTNLTWVSAGYGWLVIVIPIIVAAPAYFSGGLTLGQ
LMMSVGAFNQVNTALRWYVANFGPIAEWRATLMRVTDFRQALLDMEEEFALKDGIAYENTAPDTLTLKDVVIVAKIGEEI
DECGGFRLRETDVVIKSGEKIMINGDHSVNRKLLFQAMAGLWPCGSGTMGLPPVDDMLFVPQIAYIPGGTLREALAFPES
PDAYEKAAVEAALDKAGLHSLISRLDTRARWDKLLDSDEQKAIGFARLLLARPRWIIFDEVLEGMEPEWQETMAGLLTSM
PESGMIYIGRSEAYLEALKPRVLHLQALPAKSEEPQQQQQQVTRTGASAATGAAAMPAPAL
>Mature_620_residues
ADKSEGRPGIRRQDRVGYDLSLTDRLGVMFSAFWNSQVRGKVLFLATVLILVILATSYGQVILNKWNAPFYDSLERRDLG
EFFHQLEIFAMIAGTLLLLNVLQAWLNQMTALYMREGLSRDLVDQWLKRKRALRLASSGLIGVNPDQRLHEDSRNLAEST
TGLVLGLLQSTILLVSFIGVLWELSSGFIFHISGHSFSIPGYMVWAAIFYAASASVLSQVVGRKLVKLNADRFSKEAELR
FTLMHANENMPAITVARGEENERRRINTDISSVLRVVKRLAMANTNLTWVSAGYGWLVIVIPIIVAAPAYFSGGLTLGQL
MMSVGAFNQVNTALRWYVANFGPIAEWRATLMRVTDFRQALLDMEEEFALKDGIAYENTAPDTLTLKDVVIVAKIGEEID
ECGGFRLRETDVVIKSGEKIMINGDHSVNRKLLFQAMAGLWPCGSGTMGLPPVDDMLFVPQIAYIPGGTLREALAFPESP
DAYEKAAVEAALDKAGLHSLISRLDTRARWDKLLDSDEQKAIGFARLLLARPRWIIFDEVLEGMEPEWQETMAGLLTSMP
ESGMIYIGRSEAYLEALKPRVLHLQALPAKSEEPQQQQQQVTRTGASAATGAAAMPAPAL

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9945308, Length=511, Percent_Identity=22.7005870841487, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI7262393, Length=540, Percent_Identity=21.4814814814815, Blast_Score=90, Evalue=7e-18,
Organism=Homo sapiens, GI4826958, Length=522, Percent_Identity=22.6053639846743, Blast_Score=82, Evalue=1e-15,
Organism=Escherichia coli, GI1787772, Length=511, Percent_Identity=25.2446183953033, Blast_Score=189, Evalue=4e-49,
Organism=Caenorhabditis elegans, GI17542146, Length=542, Percent_Identity=18.6346863468635, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6325110, Length=157, Percent_Identity=26.7515923566879, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24643394, Length=596, Percent_Identity=20.9731543624161, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 68870; Mature: 68738

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADKSEGRPGIRRQDRVGYDLSLTDRLGVMFSAFWNSQVRGKVLFLATVLILVILATSYG
CCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
QVILNKWNAPFYDSLERRDLGEFFHQLEIFAMIAGTLLLLNVLQAWLNQMTALYMREGLS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RDLVDQWLKRKRALRLASSGLIGVNPDQRLHEDSRNLAESTTGLVLGLLQSTILLVSFIG
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLWELSSGFIFHISGHSFSIPGYMVWAAIFYAASASVLSQVVGRKLVKLNADRFSKEAEL
HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCE
RFTLMHANENMPAITVARGEENERRRINTDISSVLRVVKRLAMANTNLTWVSAGYGWLVI
EEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
VIPIIVAAPAYFSGGLTLGQLMMSVGAFNQVNTALRWYVANFGPIAEWRATLMRVTDFRQ
HHHHHHHCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALLDMEEEFALKDGIAYENTAPDTLTLKDVVIVAKIGEEIDECGGFRLRETDVVIKSGEK
HHHCCHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCE
IMINGDHSVNRKLLFQAMAGLWPCGSGTMGLPPVDDMLFVPQIAYIPGGTLREALAFPES
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHCCCCHHHHHHHCCCCC
PDAYEKAAVEAALDKAGLHSLISRLDTRARWDKLLDSDEQKAIGFARLLLARPRWIIFDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEHHH
VLEGMEPEWQETMAGLLTSMPESGMIYIGRSEAYLEALKPRVLHLQALPAKSEEPQQQQQ
HHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCHHEEEEECCCCCCCHHHHHH
QVTRTGASAATGAAAMPAPAL
HHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADKSEGRPGIRRQDRVGYDLSLTDRLGVMFSAFWNSQVRGKVLFLATVLILVILATSYG
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
QVILNKWNAPFYDSLERRDLGEFFHQLEIFAMIAGTLLLLNVLQAWLNQMTALYMREGLS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RDLVDQWLKRKRALRLASSGLIGVNPDQRLHEDSRNLAESTTGLVLGLLQSTILLVSFIG
HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLWELSSGFIFHISGHSFSIPGYMVWAAIFYAASASVLSQVVGRKLVKLNADRFSKEAEL
HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCE
RFTLMHANENMPAITVARGEENERRRINTDISSVLRVVKRLAMANTNLTWVSAGYGWLVI
EEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHH
VIPIIVAAPAYFSGGLTLGQLMMSVGAFNQVNTALRWYVANFGPIAEWRATLMRVTDFRQ
HHHHHHHCCHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALLDMEEEFALKDGIAYENTAPDTLTLKDVVIVAKIGEEIDECGGFRLRETDVVIKSGEK
HHHCCHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCE
IMINGDHSVNRKLLFQAMAGLWPCGSGTMGLPPVDDMLFVPQIAYIPGGTLREALAFPES
EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCHHCCCCHHHHHHHCCCCC
PDAYEKAAVEAALDKAGLHSLISRLDTRARWDKLLDSDEQKAIGFARLLLARPRWIIFDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEHHH
VLEGMEPEWQETMAGLLTSMPESGMIYIGRSEAYLEALKPRVLHLQALPAKSEEPQQQQQ
HHCCCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCHHEEEEECCCCCCCHHHHHH
QVTRTGASAATGAAAMPAPAL
HHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]